Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

35382040 .. 35382801

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAAAAGTAGACAATACTCTTCCCCCTCAAAAGCAGTTGCGACAAAGAAATGGAAAACTTGAAAGTAATTCTTATGTTCGTAAAGGTAACACCCTTGTTAGAAGACGTGCTACAGTTGCTGCTGTACCACAAAGCTCTCAAGGTCTCAGTTCATCTGTTCATCAGTTGAACTTTTCAGGTATAGATGGATCGAAGAAGAATGCAGGATCCGACAGTAGGGTTGACATTAAAAACCCTCCAAGAACAGGAGGACTCAATGCTTCTTCAGATAGGCCCCCAGCCCCACCACCCAGTGGAGCCAGAATGTCTGCATCTGCTGCCATCTCTTTTGGGATTCCTATATCATCCCCACTAGCTGAGCCTCTTCTTAGTGATATCTCTGGAACTAAATCAGATCCTATGAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.32

Weight (kDa)

10.48

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	12
AclWI	GGATC	4 cut(s)	199, 204, 217, 392
AcuI	CTGAAG	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	219, 248, 296
AgsI	TTSAA	2 cut(s)	65, 172
AjiI	CACGTC	1 cut(s)	110
AluBI	AGCT	2 cut(s)	138, 359
AluI	AGCT	2 cut(s)	138, 359
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	4 cut(s)	199, 204, 217, 392
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	122, 320
AspS9I	GGNCC	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	209
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	109, 307
BccI	CCATC	2 cut(s)	182, 332
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	123, 321
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	2 cut(s)	124, 322
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	211, 278, 301
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 248, 296
Bse1I	ACTGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	3 cut(s)	219, 248, 296
BseMII	CTCAG	2 cut(s)	163, 351
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	109, 307
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	277
BslI	CCNNNNNNNGG	3 cut(s)	219, 248, 296
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	191, 209, 397
Bsp1720I	GCTNAGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	162, 352
BspLI	GGNNCC	3 cut(s)	211, 278, 301
BspPI	GGATC	4 cut(s)	199, 204, 217, 392
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	191, 209, 397
Bst4CI	ACNGT	2 cut(s)	118, 218
Bst6I	CTCTTC	2 cut(s)	27, 372
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	149, 360, 371
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	3 cut(s)	194, 212, 400
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	191, 209, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 320
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	109, 307
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	209, 397
BstYI	RGATCY	2 cut(s)	209, 397
BsuRI	GGCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	128
CviJI	RGCY	6 cut(s)	138, 277, 284, 302, 359, 364
CviKI_1	RGCY	6 cut(s)	138, 277, 284, 302, 359, 364
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	3 cut(s)	149, 360, 371
DpnI	GATC	3 cut(s)	193, 211, 399
DpnII	GATC	3 cut(s)	191, 209, 397
DraIII	CACNNNGTG	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	27, 372
EarI	CTCTTC	2 cut(s)	27, 372
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	379
FaiI	YATR	4 cut(s)	78, 185, 344, 404
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	123, 321
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	123, 321
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	2 cut(s)	123, 321
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	255, 337
Hpy166II	GTNNAC	2 cut(s)	13, 226
Hpy188I	TCNGA	3 cut(s)	214, 271, 397
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	13, 226
HpyCH4III	ACNGT	2 cut(s)	118, 218
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	206, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 320
HpyF3I	CTNAG	3 cut(s)	149, 360, 371
HpySE526I	ACGT	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	191, 209, 397
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	165, 192, 234, 294, 307, 316, 369
Lsp1109I	GCAGC	2 cut(s)	109, 307
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	193, 211, 399
MboI	GATC	3 cut(s)	191, 209, 397
MboII	GAAGA	6 cut(s)	14, 117, 208, 211, 258, 359
MflI	RGATCY	2 cut(s)	209, 397
MluCI	AATT	2 cut(s)	70, 406
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	39, 245, 249, 375
MseI	TTAA	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	119, 320
NdeII	GATC	3 cut(s)	191, 209, 397
NlaIV	GGNNCC	3 cut(s)	211, 278, 301
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	124, 322
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	211, 278, 301
PspPI	GGNCC	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	209, 397
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	123, 321
Sau3AI	GATC	3 cut(s)	191, 209, 397
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	249
SetI	ASST	6 cut(s)	91, 112, 140, 148, 184, 361
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	70, 406
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	118, 218
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	70, 406
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	2 cut(s)	122, 320
TspDTI	ATGAA	2 cut(s)	144, 152
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.