Rh6BG385100

receptor-like serine threonine-protein kinase At5g57670

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
61360157 .. 61362288
2132 bp
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UTR
Exon/CDS
Intron
Rh6BG385100.1

Sequence Viewer

Length: 1323 bp
ATGCTTCAAGTTGGGTATGGTGGGGGAGAAGCTGAGATGGATAAGGGACGTTCTGTTGTCGTGGGAGTGAAGCTGGACTCCAAGAGCAGAGAGCTGCTGACGTGGGCTCTCGTCAAGGTGGATCTCAAGCTTAAAATTTGCAGAGGAACATCAATAAAGAAGATTCTAGTCCGGGAAGCGAAATCTTATAATGCATGCAAATTTATAGTGGGAACTGCTCAGAGCCACCATAAAATCCGGTCATCCACCACCGTGGCCAAGTACTGTGCTAAGAAACTGTCAAAGGATTGTGGGATACTTGCTGTAAATAACGGGAAAGTTGTGTTTAACAGGGAGGGCTCTCAATCAAGTTGTGACTCCCAAGGAAGTGGAGAGCATCGCCAAAATGGTATGCTCAGTGCATTTCACAGATCACTGCATAAGTCTTCGAAAGTACTAAATGAAGGCAGTGACAATCTGGCCTCAAAGAAAGCAAATGATCAGGTCAATTGTAAGAAAATGGAGCAGACATTAGCTAAAATCTTTTTCGAATGTACAGACACGGTTGAGAAACAGAAATGCTCGGTTTGTTCACGGCCCTCTGTGGATAATTCTAGTCACCAATCTGCTGAAGACTCTTCTGCTGAGGATGGTGAAGATAAATCCATGGCTATAGTGCCTGTACAAAGAGAAGAGGCAGAAACAGCAGGTTCAATTACTATGTTGATCAAAGAATTACCTGAAGCAAGACCTGGTTGGCCACTGCTTCGTCGTGCTGTGTTACCAGACCCTTCGGAGAGGTCTATGGTTCGGAAGATCTCGGTGGTTCAGTGGGCAATGCAATTGCCTAGTCGGCGACATAGACAAAATAGTTGTGATCCAGGGGAAGATCAACCTTCTAGTTTGGATGGAGAAACTGGTGCAATTGTTCCGGTGGATAGTGAGGCAATGACTGCCCCATCTTCACCTGATCACTATTCAAAAGGCTTGCCTAGAGAATTGGAGGGTCTGCATGAGAAGTACTCATCTACTTGCAGATTGTTCAATTACCAGGAACTTCAGTCAGCAACATCATATTTCTTGGCTGAAAATCTGATTGGGAGAGGCGGTAGTAGTCAAGTTTATAAAGGCTGCCTTCCTGATGCCAAGGAACTTGCTGTTAAAATCTTAAAACCATCTGAAGATGTATTGAAGGAGTTTGTTCTGGAAATAGAGATTATCACTACCTTAAATCACAAGAACATTATTTCCCTTCTGGGGTTCTGTTTTGAGGATAACAATCTTCTCTTGGTTTATGATTTCTTATCAAGAGGAAGCCTCGAGGAGAATCTCCATGGTACTTAA

Protein Analysis

440

Amino Acids

48.46

Weight (kDa)

7.52

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 356 - 437 8.2e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 357 - 438 5.4e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 189, 1104
AbsI CCTCGAGG 1 cut(s) 1298
Acc36I ACCTGC 1 cut(s) 677
AciI CCGC 1 cut(s) 1086
AclWI GGATC 2 cut(s) 129, 851
AcoI YGGCCR 2 cut(s) 255, 737
AcsI RAATTY 2 cut(s) 135, 200
AcuI CTGAAG 4 cut(s) 630, 741, 1022, 1179
AfaI GTAC 6 cut(s) 263, 435, 535, 663, 1001, 1318
AfiI CCNNNNNNNGG 1 cut(s) 1236
AgsI TTSAA 5 cut(s) 8, 693, 960, 1024, 1171
AjiI CACGTC 1 cut(s) 102
AjnI CCWGG 3 cut(s) 730, 859, 1029
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AleI CACNNNNGTG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 1211, 1243
AluBI AGCT 5 cut(s) 32, 73, 94, 130, 515
AluI AGCT 5 cut(s) 32, 73, 94, 130, 515
AlwI GGATC 2 cut(s) 129, 851
Ama87I CYCGRG 1 cut(s) 1298
AoxI GGCC 4 cut(s) 255, 459, 575, 737
ApeKI GCWGC 2 cut(s) 94, 1110
ApoI RAATTY 2 cut(s) 135, 200
AspS9I GGNCC 1 cut(s) 576
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 3 cut(s) 590, 644, 936
AsuII TTCGAA 2 cut(s) 428, 528
AvaI CYCGRG 1 cut(s) 1298
BalI TGGCCA 2 cut(s) 257, 739
BanII GRGCYC 2 cut(s) 109, 341
BbsI GAAGAC 2 cut(s) 417, 618
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 81, 1097
BccI CCATC 5 cut(s) 31, 623, 881, 946, 1162
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 3 cut(s) 732, 861, 1031
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 3 cut(s) 478, 705, 949
BcnI CCSGG 1 cut(s) 173
BfaI CTAG 5 cut(s) 167, 594, 828, 879, 972
BfmI CTRYAG 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 677
BfuI GTATCC 1 cut(s) 288
BglI GCCNNNNNGGC 1 cut(s) 832
BglII AGATCT 1 cut(s) 795
BisI GCNGC 2 cut(s) 95, 1111
BlsI GCNGC 2 cut(s) 96, 1112
BmcAI AGTACT 3 cut(s) 263, 435, 1001
Bme1390I CCNGG 4 cut(s) 173, 732, 861, 1031
BmeT110I CYCGRG 1 cut(s) 1298
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 576
BmrFI CCNGG 4 cut(s) 173, 732, 861, 1031
BmsI GCATC 2 cut(s) 385, 1111
BpiI GAAGAC 2 cut(s) 417, 618
BplI GAGNNNNNCTC 4 cut(s) 986, 1018, 1281, 1313
Bpu10I CCTNAGC 1 cut(s) 624
Bpu14I TTCGAA 2 cut(s) 428, 528
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 1257
BsaJI CCNNGG 6 cut(s) 252, 361, 645, 860, 1125, 1312
BsaWI WCCGGW 2 cut(s) 237, 910
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bsc4I CCNNNNNNNGG 1 cut(s) 1236
Bse1I ACTGG 1 cut(s) 901
Bse3DI GCAATG 2 cut(s) 822, 933
Bse8I GATNNNNATC 1 cut(s) 1257
BseBI CCWGG 3 cut(s) 732, 861, 1031
BseDI CCNNGG 6 cut(s) 252, 361, 645, 860, 1125, 1312
BseGI GGATG 3 cut(s) 242, 634, 892
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 1 cut(s) 1236
BseMI GCAATG 2 cut(s) 822, 933
BseMII CTCAG 4 cut(s) 24, 233, 409, 615
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 1 cut(s) 1316
BseXI GCAGC 2 cut(s) 81, 1097
BshFI GGCC 4 cut(s) 257, 461, 577, 739
BsiHKCI CYCGRG 1 cut(s) 1298
BsiSI CCGG 3 cut(s) 172, 238, 911
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 1236
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 4 cut(s) 257, 461, 577, 739
BsoBI CYCGRG 1 cut(s) 1298
Bsp119I TTCGAA 2 cut(s) 428, 528
Bsp1286I GDGCHC 2 cut(s) 109, 341
Bsp1407I TGTACA 2 cut(s) 533, 661
Bsp143I GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
Bsp19I CCATGG 2 cut(s) 645, 1312
BspACI CCGC 1 cut(s) 1086
BspANI GGCC 4 cut(s) 257, 461, 577, 739
BspCNI CTCAG 4 cut(s) 25, 232, 408, 616
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 2 cut(s) 129, 851
BspT104I TTCGAA 2 cut(s) 428, 528
BsrDI GCAATG 2 cut(s) 822, 933
BsrGI TGTACA 2 cut(s) 533, 661
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 6 cut(s) 252, 361, 645, 860, 1125, 1312
BssMI GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
BssT1I CCWWGG 4 cut(s) 361, 645, 1125, 1312
Bst2UI CCWGG 3 cut(s) 732, 861, 1031
Bst4CI ACNGT 4 cut(s) 253, 266, 279, 544
Bst6I CTCTTC 2 cut(s) 622, 666
BstAPI GCANNNNNTGC 1 cut(s) 932
BstAUI TGTACA 2 cut(s) 533, 661
BstBI TTCGAA 2 cut(s) 428, 528
BstC8I GCNNGC 2 cut(s) 196, 968
BstDEI CTNAG 5 cut(s) 33, 219, 270, 395, 624
BstDSI CCRYGG 3 cut(s) 252, 645, 1312
BstF5I GGATG 3 cut(s) 242, 634, 892
BstKTI GATC 8 cut(s) 124, 413, 481, 708, 798, 859, 871, 952
BstMBI GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
BstMWI GCNNNNNNNGC 3 cut(s) 683, 832, 932
BstNI CCWGG 3 cut(s) 732, 861, 1031
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 4 cut(s) 171, 730, 859, 1029
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 2 cut(s) 81, 1097
BstV2I GAAGAC 2 cut(s) 417, 618
BstX2I RGATCY 2 cut(s) 121, 795
BstXI CCANNNNNNTGG 2 cut(s) 253, 368
BstYI RGATCY 2 cut(s) 121, 795
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 4 cut(s) 257, 461, 577, 739
BtgI CCRYGG 3 cut(s) 252, 645, 1312
BtgZI GCGATG 1 cut(s) 362
BtrI CACGTC 1 cut(s) 102
BtsCI GGATG 3 cut(s) 242, 634, 892
BtsI GCAGTG 3 cut(s) 413, 454, 740
BtsIMutI CAGTG 5 cut(s) 403, 413, 454, 740, 815
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 2 cut(s) 196, 968
Cfr13I GGNCC 1 cut(s) 576
CsiI ACCWGGT 1 cut(s) 730
Csp6I GTAC 6 cut(s) 262, 434, 534, 662, 1000, 1317
CviAII CATG 4 cut(s) 195, 646, 992, 1313
CviQI GTAC 6 cut(s) 262, 434, 534, 662, 1000, 1317
DdeI CTNAG 5 cut(s) 33, 219, 270, 395, 624
DpnI GATC 8 cut(s) 123, 412, 480, 707, 797, 858, 870, 951
DpnII GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
EaeI YGGCCR 2 cut(s) 255, 737
Eam1104I CTCTTC 2 cut(s) 622, 666
EarI CTCTTC 2 cut(s) 622, 666
Eco130I CCWWGG 4 cut(s) 361, 645, 1125, 1312
Eco24I GRGCYC 2 cut(s) 109, 341
Eco57I CTGAAG 4 cut(s) 630, 741, 1022, 1179
Eco88I CYCGRG 1 cut(s) 1298
EcoRII CCWGG 3 cut(s) 730, 859, 1029
EcoT14I CCWWGG 4 cut(s) 361, 645, 1125, 1312
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 2 cut(s) 109, 341
ErhI CCWWGG 4 cut(s) 361, 645, 1125, 1312
FaeI CATG 4 cut(s) 198, 649, 995, 1316
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 194, 645, 991, 1312
FbaI TGATCA 3 cut(s) 478, 705, 949
Fnu4HI GCNGC 2 cut(s) 95, 1111
FokI GGATG 3 cut(s) 229, 641, 899
FriOI GRGCYC 2 cut(s) 109, 341
Fsp4HI GCNGC 2 cut(s) 95, 1111
FspBI CTAG 5 cut(s) 167, 594, 828, 879, 972
GluI GCNGC 2 cut(s) 95, 1111
HaeIII GGCC 4 cut(s) 257, 461, 577, 739
HapII CCGG 3 cut(s) 172, 238, 911
Hin1II CATG 4 cut(s) 198, 649, 995, 1316
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 5 cut(s) 77, 163, 356, 614, 1306
HpaII CCGG 3 cut(s) 172, 238, 911
HphI GGTGA 3 cut(s) 590, 644, 936
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 5 cut(s) 222, 775, 792, 1074, 1159
Hpy188III TCNNGA 3 cut(s) 1118, 1184, 1287
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 753
HpyAV CCTTC 6 cut(s) 437, 780, 885, 1124, 1165, 1241
HpyCH4III ACNGT 4 cut(s) 253, 266, 279, 544
HpyCH4IV ACGT 2 cut(s) 49, 101
HpyCH4V TGCA 9 cut(s) 141, 194, 198, 401, 418, 820, 902, 991, 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 683, 832, 932
HpyF3I CTNAG 5 cut(s) 33, 219, 270, 395, 624
HpySE526I ACGT 2 cut(s) 49, 101
Hsp92II CATG 4 cut(s) 198, 649, 995, 1316
Ksp22I TGATCA 3 cut(s) 478, 705, 949
Kzo9I GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
LmnI GCTCC 1 cut(s) 502
Lsp1109I GCAGC 2 cut(s) 81, 1097
LweI GCATC 2 cut(s) 385, 1111
MabI ACCWGGT 1 cut(s) 730
MaeI CTAG 5 cut(s) 167, 594, 828, 879, 972
MaeII ACGT 2 cut(s) 49, 101
MaeIII GTNAC 4 cut(s) 353, 449, 596, 759
MalI GATC 8 cut(s) 123, 412, 480, 707, 797, 858, 870, 951
MboI GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
MfeI CAATTG 3 cut(s) 487, 821, 903
MflI RGATCY 2 cut(s) 121, 795
MhlI GDGCHC 2 cut(s) 109, 341
MlsI TGGCCA 2 cut(s) 257, 739
MluNI TGGCCA 2 cut(s) 257, 739
MlyI GAGTC 3 cut(s) 71, 350, 608
Mox20I TGGCCA 2 cut(s) 257, 739
Mph1103I ATGCAT 1 cut(s) 196
MscI TGGCCA 2 cut(s) 257, 739
MseI TTAA 6 cut(s) 132, 327, 1140, 1148, 1208, 1321
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 2 cut(s) 257, 739
MspI CCGG 3 cut(s) 172, 238, 911
MspR9I CCNGG 4 cut(s) 173, 732, 861, 1031
MunI CAATTG 3 cut(s) 487, 821, 903
MvaI CCWGG 3 cut(s) 732, 861, 1031
MwoI GCNNNNNNNGC 3 cut(s) 683, 832, 932
NciI CCSGG 1 cut(s) 173
NcoI CCATGG 2 cut(s) 645, 1312
NdeII GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
NlaIII CATG 4 cut(s) 198, 649, 995, 1316
NmuCI GTSAC 3 cut(s) 353, 449, 596
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 2 cut(s) 428, 528
OliI CACNNNNGTG 1 cut(s) 251
PaeI GCATGC 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 1298
PfeI GAWTC 2 cut(s) 163, 1306
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 2 cut(s) 96, 1112
PleI GAGTC 3 cut(s) 71, 350, 608
PpsI GAGTC 3 cut(s) 71, 350, 608
PsiI TTATAA 2 cut(s) 189, 1104
Psp6I CCWGG 3 cut(s) 730, 859, 1029
PspGI CCWGG 3 cut(s) 730, 859, 1029
PspPI GGNCC 1 cut(s) 576
PspXI VCTCGAGB 1 cut(s) 1298
PsuI RGATCY 2 cut(s) 121, 795
RsaI GTAC 6 cut(s) 263, 435, 535, 663, 1001, 1318
RsaNI GTAC 6 cut(s) 262, 434, 534, 662, 1000, 1317
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 6 cut(s) 132, 327, 1140, 1148, 1208, 1321
SatI GCNGC 2 cut(s) 95, 1111
Sau3AI GATC 8 cut(s) 121, 410, 478, 705, 795, 856, 868, 949
Sau96I GGNCC 1 cut(s) 576
ScaI AGTACT 3 cut(s) 263, 435, 1001
SchI GAGTC 3 cut(s) 71, 350, 608
ScrFI CCNGG 4 cut(s) 173, 732, 861, 1031
SduI GDGCHC 2 cut(s) 109, 341
SexAI ACCWGGT 1 cut(s) 730
SfaNI GCATC 2 cut(s) 385, 1111
SfcI CTRYAG 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 1298
SfuI TTCGAA 2 cut(s) 428, 528
SlaI CTCGAG 1 cut(s) 1298
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 125, 1298
SmoI CTYRAG 2 cut(s) 125, 1298
SphI GCATGC 1 cut(s) 198
SsiI CCGC 1 cut(s) 1086
SspMI CTAG 5 cut(s) 167, 594, 828, 879, 972
StyD4I CCNGG 4 cut(s) 171, 730, 859, 1029
StyI CCWWGG 4 cut(s) 361, 645, 1125, 1312
TaaI ACNGT 4 cut(s) 253, 266, 279, 544
TaiI ACGT 2 cut(s) 52, 104
TaqI TCGA 3 cut(s) 428, 528, 1299
TatI WGTACW 5 cut(s) 261, 433, 533, 661, 999
TfiI GAWTC 2 cut(s) 163, 1306
Tru1I TTAA 6 cut(s) 132, 327, 1140, 1148, 1208, 1321
Tru9I TTAA 6 cut(s) 132, 327, 1140, 1148, 1208, 1321
TscAI CASTG 5 cut(s) 403, 420, 454, 747, 815
TseFI GTSAC 3 cut(s) 353, 449, 596
TseI GCWGC 2 cut(s) 94, 1110
Tsp45I GTSAC 3 cut(s) 353, 449, 596
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 5 cut(s) 403, 420, 454, 747, 815
XapI RAATTY 2 cut(s) 135, 200
XceI RCATGY 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 1298
XspI CTAG 5 cut(s) 167, 594, 828, 879, 972
ZrmI AGTACT 3 cut(s) 263, 435, 1001
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.