Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007645

Physical Location & Seq

Genomic Coordinates Reverse (-)

41207905 .. 41210193

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTGGATTTTCAGAAGCCGAAAGCGTCACTCTTGACCTACTCAAGAAGAAGATGGCGGAGTTTGCTAGAGAGAGAGACTGGGATAAGTTCCACAGCCCCAGAAACTTGCTCTTGGCTCTGGTGGGTGAAGTGGGAGAGCTTTCTGAGATATTTCAATGGAAAGGTGAAGTTCCAAAGGGCCTTCCTGATTGGAAAGAAGAGGAAAAGCAACACCTGGGTGAAGAGCTCTCTGATGTCCTGCTCTATCTGGTCAGGCTCTCTGACATATGTGGTGTTGATCTTGGCAAAGCTGCTCTGCGCAAAGTTGAACTCAATGCCATTAAGTACCCAGTTTCACAGAAACAGAACCAGAACCAGACCAATGGCACCACCAACCCCCACACAACCACCGCCATTAACACCAGCAATGACAATAACAACACAGAAGAGATCACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

5.01

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MazG	PF03819	33 - 99	5.1e-06	MazG nucleotide pyrophosphohydrolase domain
MazG-like	PF12643	44 - 119	2e-06	MazG-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77280 AT1G77280
fragaria_vesca	FvH4_2g27940 FvH4_2g27940 FvH4_2g27940 FvH4_2g27940
malus_domestica	MD08G1160300.v1.1 MD08G1160400.v1.1 MD15G1133500.v1.1
prunus_persica	Prupe.1G489100_v2.0.a1 Prupe.1G489100_v2.0.a1
pyrus_communis	pycom08g13520 pycom15g12030
rosa_chinensis	RchiOBHm_Chr6g0296761
rosa_laevigata	RLG00000011661
rosa_multiflora	Rmu_ssc0000192.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171190
rosa_rugosa	Rorug06G0265700 Rorug06G0265800
rosa_samantha	Rh6AG376800 Rh6BG385100 Rh6CG390400 Rh6DG377500
rosa_wichuraiana	Rw6G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	2 cut(s)	59, 393
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	158, 311
AjnI	CCWGG	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	142, 229, 293
AluI	AGCT	3 cut(s)	142, 229, 293
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	140, 179, 233
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	2 cut(s)	91, 326
BmuI	ACTGGG	2 cut(s)	91, 326
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	217
Bse1I	ACTGG	4 cut(s)	10, 86, 332, 442
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	4 cut(s)	10, 86, 332, 442
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	280, 432
BspACI	CCGC	2 cut(s)	59, 393
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	10, 86, 332, 442
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	280, 432
Bst2UI	CCWGG	1 cut(s)	218
Bst6I	CTCTTC	3 cut(s)	195, 219, 423
BstDEI	CTNAG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	283, 435
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	280, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	8 cut(s)	20, 99, 119, 142, 183, 229, 259, 293
CviKI_1	RGCY	8 cut(s)	20, 99, 119, 142, 183, 229, 259, 293
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	282, 434
DpnII	GATC	2 cut(s)	280, 432
Eam1104I	CTCTTC	3 cut(s)	195, 219, 423
EarI	CTCTTC	3 cut(s)	195, 219, 423
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	2 cut(s)	269, 271
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HphI	GGTGA	3 cut(s)	140, 179, 233
Hpy188I	TCNGA	4 cut(s)	16, 148, 235, 265
Hpy188III	TCNNGA	3 cut(s)	35, 46, 188
HpyAV	CCTTC	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	280, 432
LguI	GCTCTTC	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	282, 434
MboI	GATC	2 cut(s)	280, 432
MboII	GAAGA	5 cut(s)	61, 64, 212, 236, 440
MhlI	GDGCHC	1 cut(s)	231
MnlI	CCTC	1 cut(s)	196
MseI	TTAA	2 cut(s)	324, 399
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	280, 432
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	324, 399
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	280, 432
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	6 cut(s)	42, 144, 169, 219, 231, 295
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	2 cut(s)	59, 393
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	324, 399
Tru9I	TTAA	2 cut(s)	324, 399
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	442
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.