Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003905

Physical Location & Seq

Genomic Coordinates Forward (+)

27938643 .. 27944994

Gene Structure 6352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1216600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGAAGGAGCCATTGGTGAGGACGAAGGTGTTAATTCGGCACTTGCCTCCGTCTCTGTCTCAGTCCGATCTCTTCAGCCAAATCGACCACCTGCTCGCCGACCGCTACAACTGGCTGTGCTTCCGTCCAGGAAAAAATAGTCAGAAGAACCAGAGGTATTCTCGGGCCTACGTAGACTTCAAGCGACCCGAAGATGTTTTCGAGTTTGCTGAATTCTTTGATGGACACATATTTGTCAATGAGAAGGGGGCTCAGTTCAAGGCTATAGTTGAATATGCACCCTCACAGCGTGTCCCAAAACCTAGTATAAAAAGGGATGGCCGTGAAGGGACTATATATAAAGATCCTGATTATTTGGAGTTCCTCAAACATATTGCAAAGCCTGTTGAGCATCTTCCTAGTGCAGAAATACAGCTGGAGAGAAAGGAAGCAGAACAAGCTGGTGGTGCAAAAGAAGCTCCTATTGTTACACCCCTCATGGAGTATGTTCGGCAGAAACGAGCTATTGGAAGTGGGACTCAGGTTTCACCTGTTGTCCGGAAGGTTAGAAGAAGAGTCGGGGCTGGCTCTGTTAGCAAACGTGGCTCACCTTCTACAAAACGAGTCTCTGAAAAGAAAAAGTACATAATGAAGGACGGTACTAAACAGACAAGTCGAAAGGAGAAGTCCACTTTCAATGTGGTGCCCAGGCGAGAGGATCAGTTGGCTCGTTCTAGTGGAAAAGAAACATTAGAAAATGAAATTGGTTCTGTTTCAGGAATCCCTGTGATTTCCGACTCTGGAAAGAAGAAAATCCTACTTCTTAAAGGAAAAGAACGTGAAATACCTCCTGCTGAGGGTATGTCACAACTTAGAAGTTCTCCTGTTTCACATGCTCTGAAGCAGAACCAAAGGCGTGAGGTTAATGGAAGATTGGTCAGAAGCATACTTTCAAACAATGAGGGACGCCAAAGTCAAACTTCAACCGAAACTCAGCCTCAGCAAAAAGTTCAGAGTCTGAACGCAGATGTTAAGCGAGTATCTCGGCCTTCCAATGCAAGGTTAGGGTTGAATGGTCATGGCTCTACTAATGAACTAAATTCAATGAGCTCTGAAGGGGATAAAAAGAGGGGAACAGTTGATAGATTTTCGAAGGACACGCATGGTACAACTAGTGTTAGTGAGAGGCAAGAAAAAAATACACGAAACAAGGATAGACCTGATCGTGGTGTTTGGGCTCCTCTTCGTCGTGCTGATAGTTCACATGCTAGTGATGAGCATTTACCATCCTCCGGGTTACAACGCCCTCATTTGCTCTCTGATTCTATTGAAGGTCCTTATGGAGATGGGAAGGATGACTCTTCTTATGGAAGCAAGACTGGGGAAGTTATAAATCCTACAAGTGGACGTAATAGTTCTCATGTAGAGAATGGTTCACATGGACATTTTGGTCGCCGTGGAACTGCCCATAGTATGAAAGATGATGGTTCTCAAAATGTAGGTGAGGGGAAGCCATCTAAAAGAGGTGCTACTGTTCACGGTGCCTCTGAGAAACAAGTGTGGGTTCAGAAATCATCATCACGTTATTCAGTCAGAACACTATTCGTCATATGTTCAAGGCAATCATCTCCGTTATCGTGGCTTAAGGCGACTGAAGACATCATGAAAATGGAGGCATACGTAAAAGGAGAGCTTTGTTTGTGCCAAATTACGACCAAATTTTCTTGTGGTATGATCCAATTTGTGCCGGATGGAAGGAATGCAGCATGCTCCAAGTTACAACCGCTGCAAACGCGACCAAAGTTTTGGAGATGGTTGCCTTTTTATCTTCAGTTTACAACTTTATCGTTATGCCATATGTATAGTTTAATTGGTGACGAATTTCATCACGTAAATTACTCCAGTTCGATTGTTGTGTGTACTTGGCGGACTGGTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Smg4_UPF3

Protein Analysis

641

Amino Acids

71.72

Weight (kDa)

9.82

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Smg4_UPF3	PF03467	7 - 168	1.5e-53	Smg-4/UPF3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33980 AT1G33980
fragaria_vesca	FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510
malus_domestica	MD08G1216600.v1.1 MD15G1403800.v1.1
prunus_persica	Prupe.1G550000_v2.0.a1
pyrus_communis	pycom08g18750 pycom15g36110
rosa_chinensis	RchiOBHm_Chr6g0271031 RchiOBHm_Chr7g0229091
rosa_laevigata	RLG00000001531
rosa_multiflora	Rmu_sc0000271.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230720
rosa_rugosa	Rorug07G0255600 Rorug07G0255700 Rorug07G0255700 Rorug07G0255800 Rorug07G0255900 Rorug07G0256000
rosa_samantha	Rh7AG406900 Rh7BG386300 Rh7CG424600 Rh7DG400900
rosa_wichuraiana	Rw7G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1370
AarI	CACCTGC	1 cut(s)	99
AasI	GACNNNNNNGTC	2 cut(s)	951, 1428
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	2 cut(s)	682, 1520
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	1 cut(s)	1774
AccIII	TCCGGA	1 cut(s)	537
AciI	CCGC	3 cut(s)	103, 1763, 1906
AclWI	GGATC	3 cut(s)	338, 705, 1708
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	4 cut(s)	212, 1078, 1697, 1859
AcuI	CTGAAG	5 cut(s)	58, 899, 1113, 1653, 1793
AcyI	GRCGYC	1 cut(s)	946
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	4 cut(s)	623, 640, 1147, 1900
AfiI	CCNNNNNNNGG	5 cut(s)	836, 1038, 1205, 1271, 1382
AflII	CTTAAG	1 cut(s)	1622
AhlI	ACTAGT	1 cut(s)	1151
AjnI	CCWGG	2 cut(s)	127, 686
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 726, 758
AluBI	AGCT	6 cut(s)	415, 440, 458, 503, 1089, 1672
AluI	AGCT	6 cut(s)	415, 440, 458, 503, 1089, 1672
Alw21I	GWGCWC	1 cut(s)	1091
Alw26I	GTCTC	3 cut(s)	57, 63, 610
AlwI	GGATC	3 cut(s)	338, 705, 1708
AlwNI	CAGNNNCTG	1 cut(s)	997
Ama87I	CYCGRG	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	537
AoxI	GGCC	3 cut(s)	165, 319, 1025
ApeKI	GCWGC	2 cut(s)	1742, 1765
ApoI	RAATTY	4 cut(s)	212, 1078, 1697, 1859
ArsI	GACNNNNNNTTYG	2 cut(s)	1767, 1799
AspS9I	GGNCC	2 cut(s)	165, 1313
AsuC2I	CCSGG	1 cut(s)	1273
AsuHPI	GGTGA	5 cut(s)	28, 519, 579, 1493, 1865
AsuII	TTCGAA	1 cut(s)	1130
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	1313
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	682, 1520
BanII	GRGCYC	3 cut(s)	253, 1091, 1219
BbsI	GAAGAC	1 cut(s)	1641
Bbv12I	GWGCWC	1 cut(s)	1091
BbvCI	CCTCAGC	2 cut(s)	834, 978
BbvI	GCAGC	2 cut(s)	1752, 1754
BccI	CCATC	8 cut(s)	215, 311, 1273, 1319, 1457, 1501, 1724, 1785
BceAI	ACGGC	2 cut(s)	306, 1419
BciT130I	CCWGG	2 cut(s)	129, 688
BcnI	CCSGG	1 cut(s)	1273
BcoDI	GTCTC	3 cut(s)	57, 63, 610
BcuI	ACTAGT	1 cut(s)	1151
BfaI	CTAG	5 cut(s)	303, 399, 714, 1152, 1248
BfmI	CTRYAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	1622
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	1743, 1766
BlsI	GCNGC	2 cut(s)	1744, 1767
Bme1390I	CCNGG	3 cut(s)	129, 688, 1273
Bme18I	GGWCC	1 cut(s)	1313
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	165, 1313
BmiI	GGNNCC	4 cut(s)	9, 684, 1218, 1522
BmrFI	CCNGG	3 cut(s)	129, 688, 1273
BmrI	ACTGGG	1 cut(s)	1368
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	1368
BpiI	GAAGAC	1 cut(s)	1641
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	2 cut(s)	437, 1864
Bpu10I	CCTNAGC	2 cut(s)	834, 978
Bpu14I	TTCGAA	1 cut(s)	1130
BpuMI	CCSGG	1 cut(s)	1273
BsaAI	YACGTR	3 cut(s)	172, 1660, 1870
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	2 cut(s)	686, 1435
BsaWI	WCCGGW	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	5 cut(s)	836, 1038, 1205, 1271, 1382
Bse1I	ACTGG	4 cut(s)	116, 1363, 1881, 1915
BseAI	TCCGGA	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	129, 688
BseDI	CCNNGG	2 cut(s)	686, 1435
BseGI	GGATG	4 cut(s)	322, 1265, 1339, 1735
BseLI	CCNNNNNNNGG	5 cut(s)	836, 1038, 1205, 1271, 1382
BseMII	CTCAG	7 cut(s)	74, 266, 533, 825, 986, 992, 1518
BseNI	ACTGG	4 cut(s)	116, 1363, 1881, 1915
BseRI	GAGGAG	1 cut(s)	1209
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	2 cut(s)	1752, 1754
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	1774
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	167, 321, 1027
BshNI	GGYRCC	2 cut(s)	682, 1520
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	1091
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	538, 1272, 1727
BslFI	GGGAC	4 cut(s)	278, 343, 529, 957
BslI	CCNNNNNNNGG	5 cut(s)	836, 1038, 1205, 1271, 1382
BsmAI	GTCTC	3 cut(s)	57, 63, 610
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	4 cut(s)	278, 343, 529, 957
BsmI	GAATGC	1 cut(s)	1744
BsnI	GGCC	3 cut(s)	167, 321, 1027
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	1130
Bsp1286I	GDGCHC	4 cut(s)	253, 687, 1091, 1219
Bsp13I	TCCGGA	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	67, 343, 697, 1201, 1713
BspACI	CCGC	3 cut(s)	103, 1763, 1906
BspANI	GGCC	3 cut(s)	167, 321, 1027
BspCNI	CTCAG	7 cut(s)	73, 265, 532, 826, 985, 991, 1519
BspEI	TCCGGA	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	1774
BspHI	TCATGA	1 cut(s)	1641
BspLI	GGNNCC	4 cut(s)	9, 684, 1218, 1522
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	338, 705, 1708
BspT104I	TTCGAA	1 cut(s)	1130
BspT107I	GGYRCC	2 cut(s)	682, 1520
BspTI	CTTAAG	1 cut(s)	1622
BsrI	ACTGG	4 cut(s)	116, 1363, 1881, 1915
BssECI	CCNNGG	2 cut(s)	686, 1435
BssMI	GATC	5 cut(s)	67, 343, 697, 1201, 1713
BssNI	GRCGYC	1 cut(s)	946
Bst2UI	CCWGG	2 cut(s)	129, 688
Bst4CI	ACNGT	4 cut(s)	638, 1117, 1513, 1520
Bst6I	CTCTTC	4 cut(s)	77, 547, 1227, 1345
BstACI	GRCGYC	1 cut(s)	946
BstAFI	CTTAAG	1 cut(s)	1622
BstBAI	YACGTR	3 cut(s)	172, 1660, 1870
BstBI	TTCGAA	1 cut(s)	1130
BstC8I	GCNNGC	3 cut(s)	96, 565, 1747
BstDEI	CTNAG	8 cut(s)	60, 252, 519, 834, 851, 972, 978, 1527
BstDSI	CCRYGG	1 cut(s)	1435
BstF5I	GGATG	4 cut(s)	322, 1265, 1339, 1735
BstFNI	CGCG	1 cut(s)	1774
BstKTI	GATC	5 cut(s)	70, 346, 700, 1204, 1716
BstMAI	GTCTC	3 cut(s)	57, 63, 610
BstMBI	GATC	5 cut(s)	67, 343, 697, 1201, 1713
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	7 cut(s)	388, 437, 446, 455, 573, 582, 1771
BstNI	CCWGG	2 cut(s)	129, 688
BstNSI	RCATGY	3 cut(s)	875, 1247, 1749
BstSCI	CCNGG	3 cut(s)	127, 686, 1271
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	687
BstSNI	TACGTA	2 cut(s)	172, 1660
BstUI	CGCG	1 cut(s)	1774
BstV1I	GCAGC	2 cut(s)	1752, 1754
BstV2I	GAAGAC	1 cut(s)	1641
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	167, 321, 1027
BtgI	CCRYGG	1 cut(s)	1435
BtsCI	GGATG	4 cut(s)	322, 1265, 1339, 1735
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	96, 565, 1747
CaiI	CAGNNNCTG	1 cut(s)	997
CciI	TCATGA	1 cut(s)	1641
Cfr13I	GGNCC	2 cut(s)	165, 1313
CseI	GACGC	1 cut(s)	954
Csp6I	GTAC	4 cut(s)	622, 639, 1146, 1899
CviAII	CATG	9 cut(s)	478, 872, 1058, 1142, 1244, 1400, 1418, 1642, 1746
CviQI	GTAC	4 cut(s)	622, 639, 1146, 1899
DdeI	CTNAG	8 cut(s)	60, 252, 519, 834, 851, 972, 978, 1527
DpnI	GATC	5 cut(s)	69, 345, 699, 1203, 1715
DpnII	GATC	5 cut(s)	67, 343, 697, 1201, 1713
DraIII	CACNNNGTG	1 cut(s)	290
DrdI	GACNNNNNNGTC	2 cut(s)	951, 1428
DseDI	GACNNNNNNGTC	2 cut(s)	951, 1428
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	4 cut(s)	77, 547, 1227, 1345
EarI	CTCTTC	4 cut(s)	77, 547, 1227, 1345
EciI	GGCGGA	1 cut(s)	1921
Ecl136II	GAGCTC	1 cut(s)	1089
Eco105I	TACGTA	2 cut(s)	172, 1660
Eco24I	GRGCYC	3 cut(s)	253, 1091, 1219
Eco47I	GGWCC	1 cut(s)	1313
Eco53kI	GAGCTC	1 cut(s)	1089
Eco57I	CTGAAG	5 cut(s)	58, 899, 1113, 1653, 1793
Eco88I	CYCGRG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	1089
EcoO109I	RGGNCCY	1 cut(s)	1313
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	127, 686
EcoT38I	GRGCYC	3 cut(s)	253, 1091, 1219
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	9 cut(s)	481, 875, 1061, 1145, 1247, 1403, 1421, 1645, 1749
FalI	AAGNNNNNCTT	4 cut(s)	943, 975, 1656, 1688
FaqI	GGGAC	4 cut(s)	278, 343, 529, 957
FatI	CATG	9 cut(s)	477, 871, 1057, 1141, 1243, 1399, 1417, 1641, 1745
FauNDI	CATATG	2 cut(s)	1589, 1836
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	1743, 1766
FokI	GGATG	4 cut(s)	329, 1252, 1346, 1742
FriOI	GRGCYC	3 cut(s)	253, 1091, 1219
Fsp4HI	GCNGC	2 cut(s)	1743, 1766
FspBI	CTAG	5 cut(s)	303, 399, 714, 1152, 1248
GluI	GCNGC	2 cut(s)	1743, 1766
GsuI	CTGGAG	2 cut(s)	437, 1864
HaeIII	GGCC	3 cut(s)	167, 321, 1027
HapII	CCGG	3 cut(s)	538, 1272, 1727
HgaI	GACGC	1 cut(s)	954
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	9 cut(s)	481, 875, 1061, 1145, 1247, 1403, 1421, 1645, 1749
HinfI	GANTC	8 cut(s)	517, 555, 603, 759, 776, 994, 1301, 1337
HpaII	CCGG	3 cut(s)	538, 1272, 1727
HphI	GGTGA	5 cut(s)	28, 519, 579, 1493, 1865
Hpy166II	GTNNAC	8 cut(s)	175, 669, 1241, 1385, 1415, 1516, 1815, 1899
Hpy188III	TCNNGA	5 cut(s)	347, 538, 756, 780, 1642
Hpy8I	GTNNAC	8 cut(s)	175, 669, 1241, 1385, 1415, 1516, 1815, 1899
Hpy99I	CGWCG	1 cut(s)	1230
HpyCH4III	ACNGT	4 cut(s)	638, 1117, 1513, 1520
HpyCH4IV	ACGT	7 cut(s)	171, 580, 817, 1387, 1561, 1659, 1869
HpyCH4V	TGCA	7 cut(s)	278, 377, 404, 449, 1037, 1742, 1768
HpyF10VI	GCNNNNNNNGC	7 cut(s)	388, 437, 446, 455, 573, 582, 1771
HpyF3I	CTNAG	8 cut(s)	60, 252, 519, 834, 851, 972, 978, 1527
HpySE526I	ACGT	7 cut(s)	171, 580, 817, 1387, 1561, 1659, 1869
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	9 cut(s)	481, 875, 1061, 1145, 1247, 1403, 1421, 1645, 1749
Kpn2I	TCCGGA	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	67, 343, 697, 1201, 1713
LmnI	GCTCC	4 cut(s)	7, 463, 1222, 1754
Lsp1109I	GCAGC	2 cut(s)	1752, 1754
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	5 cut(s)	303, 399, 714, 1152, 1248
MaeII	ACGT	7 cut(s)	171, 580, 817, 1387, 1561, 1659, 1869
MaeIII	GTNAC	5 cut(s)	466, 843, 1275, 1755, 1853
MalI	GATC	5 cut(s)	69, 345, 699, 1203, 1715
MboI	GATC	5 cut(s)	67, 343, 697, 1201, 1713
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	4 cut(s)	253, 687, 1091, 1219
MlyI	GAGTC	6 cut(s)	511, 564, 612, 770, 1003, 1331
MmeI	TCCRAC	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	537
MseI	TTAA	6 cut(s)	32, 804, 903, 1011, 1623, 1847
MslI	CAYNNNNRTG	2 cut(s)	1248, 1646
MspA1I	CMGCKG	2 cut(s)	415, 1765
MspCI	CTTAAG	1 cut(s)	1622
MspI	CCGG	3 cut(s)	538, 1272, 1727
MspR9I	CCNGG	3 cut(s)	129, 688, 1273
Mva1269I	GAATGC	1 cut(s)	1744
MvaI	CCWGG	2 cut(s)	129, 688
MvnI	CGCG	1 cut(s)	1774
MwoI	GCNNNNNNNGC	7 cut(s)	388, 437, 446, 455, 573, 582, 1771
NciI	CCSGG	1 cut(s)	1273
NdeI	CATATG	2 cut(s)	1589, 1836
NdeII	GATC	5 cut(s)	67, 343, 697, 1201, 1713
NlaIII	CATG	9 cut(s)	481, 875, 1061, 1145, 1247, 1403, 1421, 1645, 1749
NlaIV	GGNNCC	4 cut(s)	9, 684, 1218, 1522
NmeAIII	GCCGAG	1 cut(s)	1003
NmuCI	GTSAC	2 cut(s)	843, 1853
NspI	RCATGY	3 cut(s)	875, 1247, 1749
NspV	TTCGAA	1 cut(s)	1130
PaeI	GCATGC	1 cut(s)	1749
PagI	TCATGA	1 cut(s)	1641
PaqCI	CACCTGC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	1 cut(s)	1744
PfeI	GAWTC	2 cut(s)	759, 1301
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	1744, 1767
PleI	GAGTC	6 cut(s)	511, 563, 611, 770, 1002, 1331
PpsI	GAGTC	6 cut(s)	511, 563, 611, 770, 1002, 1331
Ppu21I	YACGTR	3 cut(s)	172, 1660, 1870
PpuMI	RGGWCCY	1 cut(s)	1313
PsiI	TTATAA	1 cut(s)	1370
Psp124BI	GAGCTC	1 cut(s)	1091
Psp5II	RGGWCCY	1 cut(s)	1313
Psp6I	CCWGG	2 cut(s)	127, 686
PspGI	CCWGG	2 cut(s)	127, 686
PspN4I	GGNNCC	4 cut(s)	9, 684, 1218, 1522
PspPI	GGNCC	2 cut(s)	165, 1313
PspPPI	RGGWCCY	1 cut(s)	1313
PsrI	GAACNNNNNNTAC	2 cut(s)	807, 839
PstNI	CAGNNNCTG	1 cut(s)	997
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	4 cut(s)	623, 640, 1147, 1900
RsaNI	GTAC	4 cut(s)	622, 639, 1146, 1899
RseI	CAYNNNNRTG	2 cut(s)	1248, 1646
SacI	GAGCTC	1 cut(s)	1091
SaqAI	TTAA	6 cut(s)	32, 804, 903, 1011, 1623, 1847
SatI	GCNGC	2 cut(s)	1743, 1766
Sau3AI	GATC	5 cut(s)	67, 343, 697, 1201, 1713
Sau96I	GGNCC	2 cut(s)	165, 1313
SchI	GAGTC	6 cut(s)	511, 564, 612, 770, 1003, 1331
ScrFI	CCNGG	3 cut(s)	129, 688, 1273
SduI	GDGCHC	4 cut(s)	253, 687, 1091, 1219
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	1130
SinI	GGWCC	1 cut(s)	1313
SmiMI	CAYNNNNRTG	2 cut(s)	1248, 1646
SmlI	CTYRAG	1 cut(s)	1622
SmoI	CTYRAG	1 cut(s)	1622
SnaBI	TACGTA	2 cut(s)	172, 1660
SpeI	ACTAGT	1 cut(s)	1151
SphI	GCATGC	1 cut(s)	1749
SsiI	CCGC	3 cut(s)	103, 1763, 1906
SspMI	CTAG	5 cut(s)	303, 399, 714, 1152, 1248
SstI	GAGCTC	1 cut(s)	1091
StyD4I	CCNGG	3 cut(s)	127, 686, 1271
TaaI	ACNGT	4 cut(s)	638, 1117, 1513, 1520
TaiI	ACGT	7 cut(s)	174, 583, 820, 1390, 1564, 1662, 1872
TaqI	TCGA	5 cut(s)	84, 201, 655, 1130, 1886
TatI	WGTACW	2 cut(s)	621, 1898
TfiI	GAWTC	2 cut(s)	759, 1301
Tru1I	TTAA	6 cut(s)	32, 804, 903, 1011, 1623, 1847
Tru9I	TTAA	6 cut(s)	32, 804, 903, 1011, 1623, 1847
TseFI	GTSAC	2 cut(s)	843, 1853
TseI	GCWGC	2 cut(s)	1742, 1765
Tsp45I	GTSAC	2 cut(s)	843, 1853
TspDTI	ATGAA	7 cut(s)	17, 644, 753, 1086, 1469, 1658, 1853
TspGWI	ACGGA	3 cut(s)	39, 113, 1599
Vha464I	CTTAAG	1 cut(s)	1622
VpaK11BI	GGWCC	1 cut(s)	1313
XapI	RAATTY	4 cut(s)	212, 1078, 1697, 1859
XceI	RCATGY	3 cut(s)	875, 1247, 1749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	5 cut(s)	303, 399, 714, 1152, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.