Rorug07G0256000

Regulator of nonsense transcripts

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
23939940 .. 23941199
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0256000.1

Sequence Viewer

Length: 1155 bp
ATGGATGCAAGGTTAGAGGCTGGAGCTTCATACACTTGGAGAAGTATATTGGCTGGTAGGCGAGTTTTGTGTACAGGAATGAGGTTCCAAGTTGGTAGTGGGCATGATATTTCTGTTTGGGATGATAAATGGCTCCCGGTGCCTTATAATTTCAAACCGTTCTCTTTGCCAATGGAGGGACTCGAAGATTTGAAGGTGGTGGATTTGATCGATCCAGATGTTAAAGCCTGGCAGCTGGATTTGCTGCAGGAACTTTTTACACCTCATGAGGTAGATGTCATTGCTAGTATACCTTTGAGTTTGAGACATACAGAAGATCGCTTGGTTTGGCATTTTGACAAAAAGGGCTGTTACAATGTTAAAAGTGGGTACTTTGCCTGGAGGGAAGCTAGAGAAGCTTCGTCAACTGCCTCTTCTTCTAGCAATGCGACTGGTAGGCAGTTGGGTCGGTATTGGGCTGCAGTCTGGAAGATGCATGTACCAGCTAAAGTCAAGGCAGAAACTAGTCTACATATTTTCAAAGAATGTACTGCCATTAAATCTTTTTGGTTGGAGGGCCCACTAAAGCTAGCTCCCCATAATCATCCTGCTCCAAACATATGTGAATGGATGTGGTCTATGATTGATACGTTGTCTACTGAGGAGCAAGGCTTGTTTTGCACTTCTTTATGGGCCGTCTGGGCTGAAAGAAATAAGGTCTTGTGGCAGGGGTCTGTGCTTAATCCAGCTTCCTTGGCTCAGTGGGTTGGGCAATATTTGGAAGTTTTCCAAACATATCATTACAAGCCTAGTGTGAAGCAGAAGCGTCTGAAGACAAAATGGGAATGCCCTCCAAGTGGGAGGCTCAAAATTAATGTTGATGGGGCGTTTCGTATTGCGCATAATTGTGGAGGTATTGGGGTAGTCGTTAGAAATGATGCAGGTGTGGGAGTCACAACTTTAGCTAGGCCTCATTTACATGCTCACTCCGCTTTGCATATGGAGGTTGAAGAGTGTAGAGCGGGTCTTTTACTTGGTATCCACCAAGGTTGGACGGATGTTGATATTGAAAGTGACTCTATCCTATTGATTACTGCCCTGAGTAGGGATGAGGAGGATTTGTCCGAGGTGGGTCGTGTCTTGGAAGATTGTAAAGCTTACATGACGGTTTTTTAG

Protein Analysis

384

Amino Acids

43.41

Weight (kDa)

6.31

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 285 - 383 4.9e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AarI CACCTGC 1 cut(s) 911
Acc16I TGCGCA 1 cut(s) 879
Acc36I ACCTGC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 1001
AccI GTMKAC 3 cut(s) 289, 508, 635
AciI CCGC 2 cut(s) 969, 1001
AclWI GGATC 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 830
AfaI GTAC 4 cut(s) 73, 371, 480, 529
AfiI CCNNNNNNNGG 4 cut(s) 176, 836, 1083, 1084
AgsI TTSAA 5 cut(s) 154, 193, 520, 989, 1049
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 2 cut(s) 227, 377
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 206
AoxI GGCC 3 cut(s) 556, 672, 947
ApaI GGGCCC 1 cut(s) 560
ApeKI GCWGC 3 cut(s) 232, 244, 458
AseI ATTAAT 1 cut(s) 852
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 3 cut(s) 556, 557, 672
AsuC2I CCSGG 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 568
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 818
BbvI GCAGC 3 cut(s) 231, 244, 445
BccI CCATC 1 cut(s) 854
BceAI ACGGC 1 cut(s) 659
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 229, 379
BciVI GTATCC 1 cut(s) 1028
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 298
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 7 cut(s) 285, 390, 420, 504, 569, 789, 945
BfmI CTRYAG 2 cut(s) 245, 459
BfuAI ACCTGC 1 cut(s) 911
BfuI GTATCC 1 cut(s) 1028
BglI GCCNNNNNGGC 1 cut(s) 680
BisI GCNGC 3 cut(s) 233, 245, 459
BlsI GCNGC 3 cut(s) 234, 246, 460
Bme1390I CCNGG 3 cut(s) 137, 229, 379
BmgT120I GGNCC 3 cut(s) 556, 557, 672
BmiI GGNNCC 4 cut(s) 86, 134, 141, 558
BmrFI CCNGG 3 cut(s) 137, 229, 379
BmsI GCATC 2 cut(s) 462, 907
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 818
BpmI CTGGAG 2 cut(s) 42, 400
BpuMI CCSGG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 732, 1024, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 1085, 1115
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 836, 1083, 1084
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 279, 430
BseBI CCWGG 2 cut(s) 229, 379
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 732, 1024, 1104
BseGI GGATG 6 cut(s) 10, 127, 583, 615, 1042, 1093
BseLI CCNNNNNNNGG 4 cut(s) 176, 836, 1083, 1084
BseMI GCAATG 2 cut(s) 279, 430
BseMII CTCAG 3 cut(s) 630, 752, 1070
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 656, 1106
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 3 cut(s) 231, 244, 445
BshFI GGCC 3 cut(s) 558, 674, 949
BshNI GGYRCC 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 4 cut(s) 176, 836, 1083, 1084
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 3 cut(s) 558, 674, 949
Bsp120I GGGCCC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 560
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 207, 211, 316
BspACI CCGC 2 cut(s) 969, 1001
BspANI GGCC 3 cut(s) 558, 674, 949
BspCNI CTCAG 3 cut(s) 631, 751, 1071
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 4 cut(s) 86, 134, 141, 558
BspMAI CTGCAG 2 cut(s) 249, 463
BspMI ACCTGC 1 cut(s) 911
BspOI GCTAGC 1 cut(s) 572
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 1001
BsrDI GCAATG 2 cut(s) 279, 430
BsrGI TGTACA 1 cut(s) 71
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 732, 1024, 1104
BssMI GATC 3 cut(s) 207, 211, 316
BssNAI GTATAC 1 cut(s) 290
BssT1I CCWWGG 2 cut(s) 732, 1024
Bst1107I GTATAC 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 229, 379
Bst4CI ACNGT 2 cut(s) 159, 1147
Bst6I CTCTTC 2 cut(s) 418, 984
BstAUI TGTACA 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 3 cut(s) 639, 738, 1079
BstF5I GGATG 6 cut(s) 10, 127, 583, 615, 1042, 1093
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 3 cut(s) 210, 214, 319
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 207, 211, 316
BstMWI GCNNNNNNNGC 7 cut(s) 139, 241, 395, 657, 680, 734, 968
BstNI CCWGG 2 cut(s) 229, 379
BstNSI RCATGY 2 cut(s) 479, 962
BstSCI CCNGG 3 cut(s) 135, 227, 377
BstSFI CTRYAG 2 cut(s) 245, 459
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 231, 244, 445
BstV2I GAAGAC 1 cut(s) 818
BstZ17I GTATAC 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 210
BsuI GTATCC 1 cut(s) 1028
BsuRI GGCC 3 cut(s) 558, 674, 949
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 6 cut(s) 10, 127, 583, 615, 1042, 1093
BtsIMutI CAGTG 1 cut(s) 746
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 1 cut(s) 570
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 880
Cfr13I GGNCC 3 cut(s) 556, 557, 672
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 794
Csp6I GTAC 4 cut(s) 72, 370, 479, 528
CspCI CAANNNNNGTGG 2 cut(s) 1010, 1045
CviAII CATG 5 cut(s) 104, 266, 476, 959, 1141
CviQI GTAC 4 cut(s) 72, 370, 479, 528
DdeI CTNAG 3 cut(s) 639, 738, 1079
DpnI GATC 3 cut(s) 209, 213, 318
DpnII GATC 3 cut(s) 207, 211, 316
Eam1104I CTCTTC 2 cut(s) 418, 984
EarI CTCTTC 2 cut(s) 418, 984
Eco130I CCWWGG 2 cut(s) 732, 1024
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 227, 377
EcoT14I CCWWGG 2 cut(s) 732, 1024
EcoT22I ATGCAT 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 732, 1024
FaeI CATG 5 cut(s) 107, 269, 479, 962, 1144
FaqI GGGAC 1 cut(s) 192
FatI CATG 5 cut(s) 103, 265, 475, 958, 1140
FauI CCCGC 1 cut(s) 994
FauNDI CATATG 2 cut(s) 599, 978
FblI GTMKAC 3 cut(s) 289, 508, 635
Fnu4HI GCNGC 3 cut(s) 233, 245, 459
FokI GGATG 6 cut(s) 17, 134, 570, 622, 1049, 1100
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 3 cut(s) 233, 245, 459
FspBI CTAG 7 cut(s) 285, 390, 420, 504, 569, 789, 945
FspI TGCGCA 1 cut(s) 879
GlaI GCGC 1 cut(s) 879
GluI GCNGC 3 cut(s) 233, 245, 459
GsuI CTGGAG 2 cut(s) 42, 400
HaeIII GGCC 3 cut(s) 558, 674, 949
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 794
HhaI GCGC 1 cut(s) 880
Hin1II CATG 5 cut(s) 107, 269, 479, 962, 1144
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 396, 1134
HinfI GANTC 3 cut(s) 180, 930, 1055
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 5 cut(s) 72, 290, 405, 509, 636
Hpy188I TCNGA 2 cut(s) 810, 1105
Hpy188III TCNNGA 3 cut(s) 215, 266, 466
Hpy8I GTNNAC 5 cut(s) 72, 290, 405, 509, 636
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 159, 1147
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 7 cut(s) 8, 247, 461, 475, 660, 920, 976
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 241, 395, 657, 680, 734, 968
HpyF3I CTNAG 3 cut(s) 639, 738, 1079
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 5 cut(s) 107, 269, 479, 962, 1144
HspAI GCGC 1 cut(s) 878
Kzo9I GATC 3 cut(s) 207, 211, 316
LmnI GCTCC 5 cut(s) 23, 138, 577, 595, 643
Lsp1109I GCAGC 3 cut(s) 231, 244, 445
LweI GCATC 2 cut(s) 462, 907
MaeI CTAG 7 cut(s) 285, 390, 420, 504, 569, 789, 945
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 3 cut(s) 350, 931, 1052
MalI GATC 3 cut(s) 209, 213, 318
MbiI CCGCTC 1 cut(s) 1001
MboI GATC 3 cut(s) 207, 211, 316
MboII GAAGA 8 cut(s) 197, 326, 405, 408, 481, 823, 1001, 1136
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 3 cut(s) 148, 849, 883
MlyI GAGTC 3 cut(s) 174, 939, 1049
MmeI TCCRAC 2 cut(s) 531, 1010
Mph1103I ATGCAT 1 cut(s) 477
MseI TTAA 5 cut(s) 222, 360, 537, 720, 852
MslI CAYNNNNRTG 2 cut(s) 885, 957
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 137, 229, 379
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 229, 379
MwoI GCNNNNNNNGC 7 cut(s) 139, 241, 395, 657, 680, 734, 968
NciI CCSGG 1 cut(s) 137
NdeI CATATG 2 cut(s) 599, 978
NdeII GATC 3 cut(s) 207, 211, 316
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 5 cut(s) 107, 269, 479, 962, 1144
NlaIV GGNNCC 4 cut(s) 86, 134, 141, 558
NmuCI GTSAC 2 cut(s) 931, 1052
NsbI TGCGCA 1 cut(s) 879
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 2 cut(s) 479, 962
PagI TCATGA 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 911
PceI AGGCCT 1 cut(s) 949
PctI GAATGC 1 cut(s) 830
PkrI GCNGC 3 cut(s) 234, 246, 460
PleI GAGTC 3 cut(s) 174, 938, 1049
PpsI GAGTC 3 cut(s) 174, 938, 1049
PshBI ATTAAT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 227, 377
PspGI CCWGG 2 cut(s) 227, 377
PspN4I GGNNCC 4 cut(s) 86, 134, 141, 558
PspOMI GGGCCC 1 cut(s) 556
PspPI GGNCC 3 cut(s) 556, 557, 672
PstI CTGCAG 2 cut(s) 249, 463
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 4 cut(s) 73, 371, 480, 529
RsaNI GTAC 4 cut(s) 72, 370, 479, 528
RseI CAYNNNNRTG 2 cut(s) 885, 957
SaqAI TTAA 5 cut(s) 222, 360, 537, 720, 852
SatI GCNGC 3 cut(s) 233, 245, 459
Sau3AI GATC 3 cut(s) 207, 211, 316
Sau96I GGNCC 3 cut(s) 556, 557, 672
SchI GAGTC 3 cut(s) 174, 939, 1049
ScrFI CCNGG 3 cut(s) 137, 229, 379
SduI GDGCHC 1 cut(s) 560
SfaNI GCATC 2 cut(s) 462, 907
SfcI CTRYAG 2 cut(s) 245, 459
SmiMI CAYNNNNRTG 2 cut(s) 885, 957
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 3 cut(s) 148, 849, 883
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 2 cut(s) 969, 1001
SspI AATATT 1 cut(s) 755
SspMI CTAG 7 cut(s) 285, 390, 420, 504, 569, 789, 945
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 3 cut(s) 135, 227, 377
StyI CCWWGG 2 cut(s) 732, 1024
TaaI ACNGT 2 cut(s) 159, 1147
TaiI ACGT 1 cut(s) 632
TaqI TCGA 2 cut(s) 183, 210
TasI AATT 3 cut(s) 148, 849, 883
TatI WGTACW 2 cut(s) 71, 527
Tru1I TTAA 5 cut(s) 222, 360, 537, 720, 852
Tru9I TTAA 5 cut(s) 222, 360, 537, 720, 852
TscAI CASTG 1 cut(s) 746
TseFI GTSAC 2 cut(s) 931, 1052
TseI GCWGC 3 cut(s) 232, 244, 458
Tsp45I GTSAC 2 cut(s) 931, 1052
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 1049
TspRI CASTG 1 cut(s) 746
VspI ATTAAT 1 cut(s) 852
XceI RCATGY 2 cut(s) 479, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmiI GTMKAC 3 cut(s) 289, 508, 635
XspI CTAG 7 cut(s) 285, 390, 420, 504, 569, 789, 945
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.