Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003905

Physical Location & Seq

Genomic Coordinates Forward (+)

29064166 .. 29064443

Gene Structure 278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24313

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGAAGAACCCCTCGGTGAGAACGAAAGTATTAGTTCAGCACCTGCCTCCGTCTCTGTCTCAGTCCGATTTCATTCAACAAATCGACCACTTCTTCTGTGATCGCCACAACTGGTTTTGCTTTCAAATCATGGACGATCATACCAACACAGAAAACCTCCAAGCCATTCGTCACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Smg4_UPF3

Protein Analysis

59

Amino Acids

7.05

Weight (kDa)

6.48

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Smg4_UPF3	PF03467	7 - 45	2.6e-07	Smg-4/UPF3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33980 AT1G33980
fragaria_vesca	FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510
malus_domestica	MD08G1216600.v1.1 MD15G1403800.v1.1
prunus_persica	Prupe.1G550000_v2.0.a1
pyrus_communis	pycom08g18750 pycom15g36110
rosa_chinensis	RchiOBHm_Chr6g0271031 RchiOBHm_Chr7g0229091
rosa_laevigata	RLG00000001531
rosa_multiflora	Rmu_sc0000271.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230720
rosa_rugosa	Rorug07G0255600 Rorug07G0255700 Rorug07G0255700 Rorug07G0255800 Rorug07G0255900 Rorug07G0256000
rosa_samantha	Rh7AG406900 Rh7BG386300 Rh7CG424600 Rh7DG400900
rosa_wichuraiana	Rw7G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	77, 125
Alw26I	GTCTC	2 cut(s)	57, 63
AlwNI	CAGNNNCTG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	57, 63
BfaI	CTAG	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	57, 63
BsmBI	CGTCTC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	100, 136
BspCNI	CTCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	100, 136
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	103, 139
BstMAI	GTCTC	2 cut(s)	57, 63
BstMBI	GATC	2 cut(s)	100, 136
BveI	ACCTGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	43
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	1 cut(s)	164
CviKI_1	RGCY	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	102, 138
DpnII	GATC	2 cut(s)	100, 136
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	133
FaiI	YATR	2 cut(s)	131, 141
FatI	CATG	1 cut(s)	129
FspBI	CTAG	1 cut(s)	178
Hin1II	CATG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	100, 136
LpnPI	CCDG	2 cut(s)	56, 97
MaeI	CTAG	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	102, 138
MboI	GATC	2 cut(s)	100, 136
MboII	GAAGA	2 cut(s)	16, 85
MnlI	CCTC	3 cut(s)	22, 57, 167
NdeII	GATC	2 cut(s)	100, 136
NlaIII	CATG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	170
PaqCI	CACCTGC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	100, 136
SetI	ASST	2 cut(s)	45, 159
SgeI	CNNG	5 cut(s)	25, 55, 124, 142, 173
SspMI	CTAG	1 cut(s)	178
TaqI	TCGA	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	17, 61
TspGWI	ACGGA	1 cut(s)	39
XspI	CTAG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.