Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003905

Physical Location & Seq

Genomic Coordinates Reverse (-)

53739422 .. 53745706

Gene Structure 6285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG406900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGAAGGACCCCTCGGTGAGAACGAAGGTGTTAGTTCGGCACCTGCCTCCGTCTCTGTCTCAGTCCGATTTCTTTCAGCAAATCGACCACCTCTTCGGTGACCGCCACAACTGGTTTTGCTTCCGTCCCGGAAAAAATAGCCATAAGCATCAGAGGTATTCTCGAGCCTACATTGAGTTTAAGCGACCTGAAGATGTTTTTGAGTTTGCGGAATTCTTTGACGGTCATGTATTTGTTAATGAGAAAGGGACTCAGTTCAAGTCTATAGTTGAATATGCACCTTCACAGCGTGTTCCCAAGCCAAGTAACAAGAAGGATGGTCGTGAAGGGACTATATATAAAGATCCTGATTATTTGGAGTTCCTGAAACATATTGCAAAGCCTGCTGAGCATCTTCCTAGTGCAGAAATACAGCTGGAGAGAAAGGAAGCTGAACAAGCTGGTGCTGCAAAAGAAGCTCCTATTGTTACACCCCTGATGGAGTATGTTCGTCAGAAACGAGCTATTGGAAGTGGAACCCAGATTTCATCAGTTGTTCGGAAGGTGAGAAGAAGAACTGGGGCCACATCTTTTAGCAAACGTGGCTCAACTTCTACAAAACGGGTCTCTGAGAAGAAAAAGGCATGTGTTTCTTACATATTAAAGGATGCAGCTAAATATACAAGTCGAAAGGACAGGTCAACTTTCAATTTGGTGCCCAGGCGAGAGGATCAGTTGGCTAGTTCAAGTGGAAAAGATACGATGGGAAATGAAATTGGTTCTGTTTCGGGAATCCCTGTGATTGCAGACTCTGGAAGGACAAAAATCCTACTTAAGCGGGAAATACCTCCTGCTCCTGAAGGTATGCCACAACATCAGGCATCCATAGGAAGTTCTCCTGTTTCAGCTGCTCCAAAGCAGAACCAAAGGCGTGATGCTAGTGGAAGATTTCTCAGAAGCATACTTTCACATAATGAGGGACGCCAAAGAGAAACTTCAGCTGAAGTTCAGTCTCAGCAGAAAATCCTGGGTCCGAACTCGGACATTAAGCGTGTGTCGCGACCCTCCAATACACGGTTAGGGTTGAATAATGAACCTAATTCAATGAGCTCTGAAGGGGACAGAAGGAGGGCTACAGTCGATAAATTTACGAAGAAGGACGTGCATGGTACAACTAACGTTAATGAGAAGCAAGACAAGCATACAAGAAACAAGGATAGACCAGATCGTGGTGTTTGGACTCCTCTTCGTCGTGCTGAGAGTTCCCATGCTAGTGATGAGCACTTATCATCCTCAGCTTCACAACGACCTCAACTGCTATCTGATTCAGTTGAAGTTCCCCATGGAGAAGTGAAAGCTGACACATCTTATGGAAGCAGGACTGGGGAAGTTATAACTTCCACAGGTGGGCGTAGTCTTACTCATGTAGACAATGGTCCCCATCAACATTTTGGTCGCCGTGGAACTGCCCCTAGTACGAAAGATGCTGGCTCTCTAAATATAAGTGAGGGGAAGTCATCTAAAAGAGGTGCTGCTGTTCATGGTGCCCCTGAGAAACAAGTGTGGGTTCAGAAATCATCTTCCGGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

Smg4_UPF3

Protein Analysis

523

Amino Acids

58.12

Weight (kDa)

10.02

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Smg4_UPF3	PF03467	7 - 168	3.6e-56	Smg-4/UPF3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33980 AT1G33980
fragaria_vesca	FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510 FvH4_5g32510
malus_domestica	MD08G1216600.v1.1 MD15G1403800.v1.1
prunus_persica	Prupe.1G550000_v2.0.a1
pyrus_communis	pycom08g18750 pycom15g36110
rosa_chinensis	RchiOBHm_Chr6g0271031 RchiOBHm_Chr7g0229091
rosa_laevigata	RLG00000001531
rosa_multiflora	Rmu_sc0000271.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230720
rosa_rugosa	Rorug07G0255600 Rorug07G0255700 Rorug07G0255700 Rorug07G0255800 Rorug07G0255900 Rorug07G0256000
rosa_samantha	Rh7AG406900 Rh7BG386300 Rh7CG424600 Rh7DG400900
rosa_wichuraiana	Rw7G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1373
AarI	CACCTGC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	51
AccB1I	GGYRCC	3 cut(s)	39, 694, 1523
AccB7I	CCANNNNNTGG	1 cut(s)	1208
AccI	GTMKAC	1 cut(s)	1407
AccII	CGCG	1 cut(s)	1039
AciI	CCGC	3 cut(s)	103, 209, 817
AclI	AACGTT	1 cut(s)	1158
AclWI	GGATC	2 cut(s)	338, 717
AcsI	RAATTY	2 cut(s)	212, 1124
AcuI	CTGAAG	5 cut(s)	210, 858, 960, 1002, 1113
AcyI	GRCGYC	1 cut(s)	961
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	1150, 1456
AfiI	CCNNNNNNNGG	3 cut(s)	1053, 1208, 1386
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	7 cut(s)	259, 272, 688, 726, 1066, 1083, 1313
AjiI	CACGTC	1 cut(s)	1141
AjnI	CCWGG	2 cut(s)	698, 1005
Alw21I	GWGCWC	2 cut(s)	1091, 1263
Alw26I	GTCTC	4 cut(s)	57, 63, 610, 996
AlwI	GGATC	2 cut(s)	338, 717
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	4 cut(s)	446, 650, 887, 1511
ApoI	RAATTY	2 cut(s)	212, 1124
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspS9I	GGNCC	4 cut(s)	7, 561, 1010, 1415
AsuC2I	CCSGG	2 cut(s)	129, 1564
AsuHPI	GGTGA	3 cut(s)	28, 110, 556
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	3 cut(s)	7, 1010, 1415
BaeGI	GKGCMC	2 cut(s)	699, 1528
BanI	GGYRCC	3 cut(s)	39, 694, 1523
BanII	GRGCYC	1 cut(s)	1091
BarI	GAAGNNNNNNTAC	2 cut(s)	1096, 1128
Bbv12I	GWGCWC	2 cut(s)	1091, 1263
BbvCI	CCTCAGC	1 cut(s)	1273
BbvI	GCAGC	4 cut(s)	433, 662, 874, 1498
BccI	CCATC	4 cut(s)	311, 472, 736, 1428
BceAI	ACGGC	1 cut(s)	1422
BciT130I	CCWGG	2 cut(s)	700, 1007
BcnI	CCSGG	2 cut(s)	129, 1564
BcoDI	GTCTC	4 cut(s)	57, 63, 610, 996
BfaI	CTAG	5 cut(s)	399, 720, 918, 1251, 1452
BfmI	CTRYAG	2 cut(s)	264, 1113
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	4 cut(s)	447, 651, 888, 1512
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	4 cut(s)	448, 652, 889, 1513
Bme1390I	CCNGG	4 cut(s)	129, 700, 1007, 1564
Bme18I	GGWCC	3 cut(s)	7, 1010, 1415
BmeT110I	CYCGRG	1 cut(s)	162
BmgBI	CACGTC	1 cut(s)	1141
BmgT120I	GGNCC	4 cut(s)	7, 561, 1010, 1415
BmiI	GGNNCC	8 cut(s)	9, 41, 517, 562, 696, 1011, 1417, 1525
BmrFI	CCNGG	4 cut(s)	129, 700, 1007, 1564
BmrI	ACTGGG	2 cut(s)	567, 1371
BmsI	GCATC	6 cut(s)	157, 400, 637, 869, 904, 1453
BmuI	ACTGGG	2 cut(s)	567, 1371
BoxI	GACNNNNGTC	1 cut(s)	1413
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	1273
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	129, 1564
BsaHI	GRCGYC	1 cut(s)	961
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	5 cut(s)	12, 698, 1006, 1321, 1438
Bsc4I	CCNNNNNNNGG	3 cut(s)	1053, 1208, 1386
Bse1I	ACTGG	3 cut(s)	116, 562, 1366
BseBI	CCWGG	2 cut(s)	700, 1007
BseDI	CCNNGG	5 cut(s)	12, 698, 1006, 1321, 1438
BseGI	GGATG	4 cut(s)	322, 652, 860, 1268
BseLI	CCNNNNNNNGG	3 cut(s)	1053, 1208, 1386
BseMII	CTCAG	9 cut(s)	74, 266, 378, 600, 946, 1007, 1227, 1287, 1521
BseNI	ACTGG	3 cut(s)	116, 562, 1366
BseRI	GAGGAG	1 cut(s)	1212
BseSI	GKGCMC	2 cut(s)	699, 1528
BseXI	GCAGC	4 cut(s)	433, 662, 874, 1498
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	1039
BshFI	GGCC	1 cut(s)	563
BshNI	GGYRCC	3 cut(s)	39, 694, 1523
BsiHKAI	GWGCWC	2 cut(s)	1091, 1263
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	129, 1563
BslFI	GGGAC	6 cut(s)	111, 262, 343, 972, 1112, 1401
BslI	CCNNNNNNNGG	3 cut(s)	1053, 1208, 1386
BsmAI	GTCTC	4 cut(s)	57, 63, 610, 996
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	6 cut(s)	111, 262, 343, 972, 1112, 1401
BsnI	GGCC	1 cut(s)	563
Bso31I	GGTCTC	1 cut(s)	610
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	4 cut(s)	699, 1091, 1263, 1528
Bsp143I	GATC	3 cut(s)	343, 709, 1204
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	1321
Bsp68I	TCGCGA	1 cut(s)	1039
BspACI	CCGC	3 cut(s)	103, 209, 817
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	9 cut(s)	73, 265, 379, 601, 945, 1006, 1228, 1286, 1522
BspFNI	CGCG	1 cut(s)	1039
BspLI	GGNNCC	8 cut(s)	9, 41, 517, 562, 696, 1011, 1417, 1525
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	338, 717
BspT107I	GGYRCC	3 cut(s)	39, 694, 1523
BspTI	CTTAAG	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	610
BsrI	ACTGG	3 cut(s)	116, 562, 1366
BssECI	CCNNGG	5 cut(s)	12, 698, 1006, 1321, 1438
BssMI	GATC	3 cut(s)	343, 709, 1204
BssNI	GRCGYC	1 cut(s)	961
BssT1I	CCWWGG	1 cut(s)	1321
Bst2UI	CCWGG	2 cut(s)	700, 1007
Bst4CI	ACNGT	3 cut(s)	224, 1056, 1117
Bst6I	CTCTTC	2 cut(s)	98, 1230
BstACI	GRCGYC	1 cut(s)	961
BstAFI	CTTAAG	1 cut(s)	812
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	384, 1468
BstDEI	CTNAG	9 cut(s)	60, 252, 387, 609, 932, 993, 1236, 1273, 1530
BstDSI	CCRYGG	2 cut(s)	1321, 1438
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	4 cut(s)	322, 652, 860, 1268
BstFNI	CGCG	1 cut(s)	1039
BstKTI	GATC	3 cut(s)	346, 712, 1207
BstMAI	GTCTC	4 cut(s)	57, 63, 610, 996
BstMBI	GATC	3 cut(s)	343, 709, 1204
BstMWI	GCNNNNNNNGC	8 cut(s)	383, 388, 437, 446, 455, 582, 1036, 1177
BstNI	CCWGG	2 cut(s)	700, 1007
BstNSI	RCATGY	1 cut(s)	627
BstPAI	GACNNNNGTC	1 cut(s)	1413
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	4 cut(s)	127, 698, 1005, 1562
BstSFI	CTRYAG	2 cut(s)	264, 1113
BstSLI	GKGCMC	2 cut(s)	699, 1528
BstUI	CGCG	1 cut(s)	1039
BstV1I	GCAGC	4 cut(s)	433, 662, 874, 1498
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	563
BtgI	CCRYGG	2 cut(s)	1321, 1438
BtrI	CACGTC	1 cut(s)	1141
BtsCI	GGATG	4 cut(s)	322, 652, 860, 1268
BtuMI	TCGCGA	1 cut(s)	1039
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	384, 1468
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	4 cut(s)	7, 561, 1010, 1415
CseI	GACGC	1 cut(s)	969
Csp6I	GTAC	2 cut(s)	1149, 1455
CviAII	CATG	7 cut(s)	227, 624, 1145, 1247, 1322, 1403, 1520
CviQI	GTAC	2 cut(s)	1149, 1455
DdeI	CTNAG	9 cut(s)	60, 252, 387, 609, 932, 993, 1236, 1273, 1530
DpnI	GATC	3 cut(s)	345, 711, 1206
DpnII	GATC	3 cut(s)	343, 709, 1204
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	98, 1230
EarI	CTCTTC	2 cut(s)	98, 1230
Ecl136II	GAGCTC	1 cut(s)	1089
Eco130I	CCWWGG	1 cut(s)	1321
Eco24I	GRGCYC	1 cut(s)	1091
Eco31I	GGTCTC	1 cut(s)	610
Eco47I	GGWCC	3 cut(s)	7, 1010, 1415
Eco53kI	GAGCTC	1 cut(s)	1089
Eco57I	CTGAAG	5 cut(s)	210, 858, 960, 1002, 1113
Eco88I	CYCGRG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	1089
EcoO109I	RGGNCCY	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	698, 1005
EcoT14I	CCWWGG	1 cut(s)	1321
EcoT38I	GRGCYC	1 cut(s)	1091
ErhI	CCWWGG	1 cut(s)	1321
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	7 cut(s)	230, 627, 1148, 1250, 1325, 1406, 1523
FalI	AAGNNNNNCTT	2 cut(s)	958, 990
FaqI	GGGAC	6 cut(s)	111, 262, 343, 972, 1112, 1401
FatI	CATG	7 cut(s)	226, 623, 1144, 1246, 1321, 1402, 1519
FauI	CCCGC	1 cut(s)	810
FblI	GTMKAC	1 cut(s)	1407
Fnu4HI	GCNGC	4 cut(s)	447, 651, 888, 1512
FokI	GGATG	4 cut(s)	329, 659, 847, 1255
FriOI	GRGCYC	1 cut(s)	1091
Fsp4HI	GCNGC	4 cut(s)	447, 651, 888, 1512
FspBI	CTAG	5 cut(s)	399, 720, 918, 1251, 1452
GluI	GCNGC	4 cut(s)	447, 651, 888, 1512
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	2 cut(s)	129, 1563
HgaI	GACGC	1 cut(s)	969
Hin1I	GRCGYC	1 cut(s)	961
Hin1II	CATG	7 cut(s)	230, 627, 1148, 1250, 1325, 1406, 1523
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	5 cut(s)	250, 771, 788, 1219, 1304
HpaII	CCGG	2 cut(s)	129, 1563
HphI	GGTGA	3 cut(s)	28, 110, 556
Hpy166II	GTNNAC	2 cut(s)	681, 1408
Hpy188III	TCNNGA	8 cut(s)	162, 323, 347, 364, 768, 792, 836, 1038
Hpy8I	GTNNAC	2 cut(s)	681, 1408
Hpy99I	CGWCG	1 cut(s)	1233
HpyCH4III	ACNGT	3 cut(s)	224, 1056, 1117
HpyCH4IV	ACGT	3 cut(s)	580, 1140, 1158
HpyCH4V	TGCA	7 cut(s)	278, 377, 404, 449, 650, 785, 1144
HpyF10VI	GCNNNNNNNGC	8 cut(s)	383, 388, 437, 446, 455, 582, 1036, 1177
HpyF3I	CTNAG	9 cut(s)	60, 252, 387, 609, 932, 993, 1236, 1273, 1530
HpySE526I	ACGT	3 cut(s)	580, 1140, 1158
Hsp92I	GRCGYC	1 cut(s)	961
Hsp92II	CATG	7 cut(s)	230, 627, 1148, 1250, 1325, 1406, 1523
Kzo9I	GATC	3 cut(s)	343, 709, 1204
LmnI	GCTCC	3 cut(s)	463, 838, 895
Lsp1109I	GCAGC	4 cut(s)	433, 662, 874, 1498
LweI	GCATC	6 cut(s)	157, 400, 637, 869, 904, 1453
MaeI	CTAG	5 cut(s)	399, 720, 918, 1251, 1452
MaeII	ACGT	3 cut(s)	580, 1140, 1158
MaeIII	GTNAC	3 cut(s)	98, 305, 466
MalI	GATC	3 cut(s)	345, 711, 1206
MboI	GATC	3 cut(s)	343, 709, 1204
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	4 cut(s)	699, 1091, 1263, 1528
MluCI	AATT	5 cut(s)	212, 688, 753, 1078, 1124
MlyI	GAGTC	3 cut(s)	244, 782, 1213
MseI	TTAA	6 cut(s)	180, 237, 641, 813, 1026, 1161
MslI	CAYNNNNRTG	1 cut(s)	1251
MspA1I	CMGCKG	3 cut(s)	415, 887, 980
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	129, 1563
MspR9I	CCNGG	4 cut(s)	129, 700, 1007, 1564
MvaI	CCWGG	2 cut(s)	700, 1007
MvnI	CGCG	1 cut(s)	1039
MwoI	GCNNNNNNNGC	8 cut(s)	383, 388, 437, 446, 455, 582, 1036, 1177
NciI	CCSGG	2 cut(s)	129, 1564
NcoI	CCATGG	1 cut(s)	1321
NdeII	GATC	3 cut(s)	343, 709, 1204
NlaIII	CATG	7 cut(s)	230, 627, 1148, 1250, 1325, 1406, 1523
NlaIV	GGNNCC	8 cut(s)	9, 41, 517, 562, 696, 1011, 1417, 1525
NmuCI	GTSAC	1 cut(s)	98
NruI	TCGCGA	1 cut(s)	1039
NspI	RCATGY	1 cut(s)	627
PaeR7I	CTCGAG	1 cut(s)	162
PaqCI	CACCTGC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 496
PfeI	GAWTC	2 cut(s)	771, 1304
PflMI	CCANNNNNTGG	1 cut(s)	1208
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	448, 652, 889, 1513
PleI	GAGTC	3 cut(s)	244, 782, 1213
PpsI	GAGTC	3 cut(s)	244, 782, 1213
PpuMI	RGGWCCY	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	1413
PsiI	TTATAA	1 cut(s)	1373
Psp124BI	GAGCTC	1 cut(s)	1091
Psp1406I	AACGTT	1 cut(s)	1158
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	698, 1005
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	698, 1005
PspN4I	GGNNCC	8 cut(s)	9, 41, 517, 562, 696, 1011, 1417, 1525
PspPI	GGNCC	4 cut(s)	7, 561, 1010, 1415
PspPPI	RGGWCCY	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	3 cut(s)	415, 887, 980
RruI	TCGCGA	1 cut(s)	1039
RsaI	GTAC	2 cut(s)	1150, 1456
RsaNI	GTAC	2 cut(s)	1149, 1455
RseI	CAYNNNNRTG	1 cut(s)	1251
SacI	GAGCTC	1 cut(s)	1091
SaqAI	TTAA	6 cut(s)	180, 237, 641, 813, 1026, 1161
SatI	GCNGC	4 cut(s)	447, 651, 888, 1512
Sau3AI	GATC	3 cut(s)	343, 709, 1204
Sau96I	GGNCC	4 cut(s)	7, 561, 1010, 1415
SchI	GAGTC	3 cut(s)	244, 782, 1213
ScrFI	CCNGG	4 cut(s)	129, 700, 1007, 1564
SduI	GDGCHC	4 cut(s)	699, 1091, 1263, 1528
SfaNI	GCATC	6 cut(s)	157, 400, 637, 869, 904, 1453
SfcI	CTRYAG	2 cut(s)	264, 1113
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	3 cut(s)	7, 1010, 1415
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	1251
SmlI	CTYRAG	2 cut(s)	162, 812
SmoI	CTYRAG	2 cut(s)	162, 812
Sse9I	AATT	5 cut(s)	212, 688, 753, 1078, 1124
SsiI	CCGC	3 cut(s)	103, 209, 817
SspMI	CTAG	5 cut(s)	399, 720, 918, 1251, 1452
SstI	GAGCTC	1 cut(s)	1091
StyD4I	CCNGG	4 cut(s)	127, 698, 1005, 1562
StyI	CCWWGG	1 cut(s)	1321
TaaI	ACNGT	3 cut(s)	224, 1056, 1117
TaiI	ACGT	3 cut(s)	583, 1143, 1161
TaqI	TCGA	4 cut(s)	84, 163, 667, 1119
TasI	AATT	5 cut(s)	212, 688, 753, 1078, 1124
TfiI	GAWTC	2 cut(s)	771, 1304
Tru1I	TTAA	6 cut(s)	180, 237, 641, 813, 1026, 1161
Tru9I	TTAA	6 cut(s)	180, 237, 641, 813, 1026, 1161
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	4 cut(s)	446, 650, 887, 1511
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	5 cut(s)	17, 516, 765, 1086, 1508
TspGWI	ACGGA	2 cut(s)	39, 113
Van91I	CCANNNNNTGG	1 cut(s)	1208
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	3 cut(s)	7, 1010, 1415
XapI	RAATTY	2 cut(s)	212, 1124
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XhoI	CTCGAG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	1407
XspI	CTAG	5 cut(s)	399, 720, 918, 1251, 1452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.