MD08G1228200.v1.1
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
29445844 .. 29450535
4692 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1228200.v1.1.491

Sequence Viewer

Length: 1767 bp
ATGTCCATCTCCTTCCCCTCCTCCTCCTTTCAACTCTTCTTTTATAAACCTTTCTTCTCTCAGCAGAGCAATTTTCAGAAGCAACAAGTAGCTGGGTTTTGGAGAAAGCCAGAGTCTTTGAGGAGGTTGGTGGTCAAAGCAGGCGCAAAAAAGATATCTTTTGGTACAGAATGCAGGGATGCCTTACAAACTGGGATAGATAAACTTGCTGATGCTGTTTCCCTTACCTTAGGACCTAAAGGACGTAATGTTGTTCTTTCTGAGTCTGAAAAACTGAAAGTGATAAATGATGGTGTAACAATTGTTCAGTCCATAGAGCTATCAGATACAATTGAGAACGTGGGAGCGATGCTAATCCAAGAGGTTGCAAAGAAAATGAATAATTTGGCAGGTGATGGTACCACCACTGCAGTCATTTTGACAAGAGAAATTATCAGAGGTGGACTTTTGGCAGTAGCTTTTGGAGCTAACCCAATTTCTTTGAAGAAAGGAATGGATAAGACTGTAAATGAACTGGTCAAGATCTTGAAGGAGAAGAGTCTTCCAGTAAAAGGAAGGAAAGACATTAAAGCTGTAGCTTCAATTTCTGCTGGAAATGACAAGTTCATCGGTAATTTGATTGCTGAAGCTATAGAAAAGATTGGACCTGATGGAGTAATCTCAATTGAGTCATCCTCATCATTTGAAACGTCTGTTTTAGTTGAAGAAGGGCTGAAGTTTGACAAGGGATACATGTCCTCCCACTTCATTACGAACCAGGAAAAATCTCTTGTGGAGTTTGACAAAGCTAAGGTCCTAGTAACTGATCACAAGATCTCAACTGTTAGAGAAATTGTTCCTTTATTGGAAAAGACAACCCAACTGAGTATCCCGCTGCTAATCATTGCAGAGGATATCTCAAAGCAAGTACTGGAAACACTAGTGGTGAACAAAAAGCAGGGTTTACTTAAAGTCGCTGTTGTTAAATGTCCTGGATTTGCAGAGGGGAAAAAAGCTATTCTGCAAGATATTGCACTTATGACAGGTGCTGATTTTCTCTCTGGAGATTTTGGTTTGACCCTTGAGAGTGCAACATCAGATCAACTTGGAATTGCAAGAAAAGTGAAAATAACAAGTAATTCAACAACGATAGTTGCAGACCCTTCTACTAAAGCTGAGATTCAGGCAAGAATATTACAGATCAAGAAGGATCTGGCAGAAACAGAAAATGCATACCTGTCGAGAAAGCTCTCTGAAAGAATTGCCAAACTTTGCGGTGGAGTTGCTGTAATTAAGGTAGGAGCACATACTGAGGTAGAACTTGAAGATCGCAAACTCAGAATTGAAGATGCAAAGAACTCTACATTTGCTGCTATGGAGGAAGGAGTGGTGCCTGGTGGTGGTGCCACATATGTACATCTCTCAGAATTTATTCCTGCCATAAAGAATTCTATGGAAGATTTAGATGAGCAGATTGGTGCTGACCTTGTAGCAAAGGCTCTACTTGCTCCTGCAAAAGCAATTGCAACTAATGCAGGGGATGATGGAGAAGTTGTTGTGGAGAAGACTAAAAGTTCTGATTGGAGAGTTGGGTACAATGCAATGACAGGAAACTATGAAGATCTCCCAGATGCGGGAGTTATAGATCCTTGTAGGGTTTCAAGATGTGCCCTTCAAATTGCAGCCTCCATTGCCGGAGTGGTTCTTACAACTCAAGCTGTATTGGTGGAGAAAACAAAGAAGAAAAAGCCAGCTGTTCCTTTTGTTCCGGGAATAACTCCTCAGTAA

Protein Analysis

589

Amino Acids

63.17

Weight (kDa)

8.3

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 69 - 571 1.2e-74 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 3 cut(s) 398, 1369, 1382
AciI CCGC 3 cut(s) 872, 1254, 1613
AclWI GGATC 2 cut(s) 1197, 1619
AcsI RAATTY 2 cut(s) 1406, 1426
AcuI CTGAAG 2 cut(s) 645, 734
AfaI GTAC 5 cut(s) 166, 400, 909, 1395, 1574
AfiI CCNNNNNNNGG 4 cut(s) 551, 1379, 1612, 1613
AflIII ACRYGT 1 cut(s) 732
AhlI ACTAGT 1 cut(s) 919
AjnI CCWGG 3 cut(s) 756, 970, 1372
Alw21I GWGCWC 1 cut(s) 1285
AlwI GGATC 2 cut(s) 1197, 1619
AlwNI CAGNNNCTG 1 cut(s) 1028
ApeKI GCWGC 3 cut(s) 874, 1349, 1661
ApoI RAATTY 2 cut(s) 1406, 1426
ArsI GACNNNNNNTTYG 2 cut(s) 777, 809
Asp700I GAANNNNTTC 2 cut(s) 834, 1410
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 233, 644, 793
AsuC2I CCSGG 1 cut(s) 1749
AsuHPI GGTGA 2 cut(s) 404, 937
AvaII GGWCC 3 cut(s) 233, 644, 793
AxyI CCTNAGG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 1651
BanI GGYRCC 3 cut(s) 398, 1369, 1382
BbsI GAAGAC 2 cut(s) 533, 1550
Bbv12I GWGCWC 1 cut(s) 1285
BbvI GCAGC 3 cut(s) 861, 1336, 1673
BccI CCATC 5 cut(s) 14, 284, 389, 644, 1517
BcgI CGANNNNNNTGC 2 cut(s) 1200, 1234
BciT130I CCWGG 3 cut(s) 758, 972, 1374
BciVI GTATCC 2 cut(s) 722, 878
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 1749
BcuI ACTAGT 1 cut(s) 919
BfaI CTAG 2 cut(s) 797, 920
BfmI CTRYAG 3 cut(s) 408, 573, 630
BfuAI ACCTGC 1 cut(s) 380
BfuI GTATCC 2 cut(s) 722, 878
BglII AGATCT 3 cut(s) 522, 813, 1600
BisI GCNGC 3 cut(s) 875, 1350, 1662
BlsI GCNGC 3 cut(s) 876, 1351, 1663
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 4 cut(s) 758, 972, 1374, 1749
Bme18I GGWCC 3 cut(s) 233, 644, 793
BmgT120I GGNCC 3 cut(s) 233, 644, 793
BmiI GGNNCC 3 cut(s) 400, 1371, 1384
BmrFI CCNGG 4 cut(s) 758, 972, 1374, 1749
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 5 cut(s) 169, 202, 339, 1318, 1600
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 533, 1550
BplI GAGNNNNNCTC 4 cut(s) 659, 691, 881, 913
BpmI CTGGAG 1 cut(s) 1062
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 1082, 1677
BpuMI CCSGG 1 cut(s) 1749
BsaBI GATNNNNATC 1 cut(s) 353
BsaXI ACNNNNNCTCC 6 cut(s) 722, 752, 1251, 1281, 1518, 1548
Bsc4I CCNNNNNNNGG 4 cut(s) 551, 1379, 1612, 1613
Bse1I ACTGG 4 cut(s) 196, 519, 545, 915
Bse21I CCTNAGG 1 cut(s) 229
Bse3DI GCAATG 3 cut(s) 882, 1587, 1668
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 3 cut(s) 758, 972, 1374
BseGI GGATG 3 cut(s) 184, 671, 1525
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 4 cut(s) 551, 1379, 1612, 1613
BseMI GCAATG 3 cut(s) 882, 1587, 1668
BseMII CTCAG 7 cut(s) 74, 252, 854, 1146, 1281, 1330, 1416
BseNI ACTGG 4 cut(s) 196, 519, 545, 915
BseRI GAGGAG 4 cut(s) 10, 13, 136, 1749
BseSI GKGCMC 1 cut(s) 1651
BseXI GCAGC 3 cut(s) 861, 1336, 1673
BseYI CCCAGC 1 cut(s) 92
BshNI GGYRCC 3 cut(s) 398, 1369, 1382
BsiHKAI GWGCWC 1 cut(s) 1285
BsiSI CCGG 2 cut(s) 1674, 1748
BslI CCNNNNNNNGG 4 cut(s) 551, 1379, 1612, 1613
BsmI GAATGC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 1285, 1651
Bsp1407I TGTACA 1 cut(s) 1393
Bsp143I GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
BspACI CCGC 3 cut(s) 872, 1254, 1613
BspCNI CTCAG 7 cut(s) 73, 253, 855, 1147, 1282, 1329, 1415
BspLI GGNNCC 3 cut(s) 400, 1371, 1384
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 1197, 1619
BspT107I GGYRCC 3 cut(s) 398, 1369, 1382
BsrDI GCAATG 3 cut(s) 882, 1587, 1668
BsrGI TGTACA 1 cut(s) 1393
BsrI ACTGG 4 cut(s) 196, 519, 545, 915
BssMI GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
Bst2UI CCWGG 3 cut(s) 758, 972, 1374
Bst4CI ACNGT 2 cut(s) 505, 823
Bst6I CTCTTC 2 cut(s) 41, 530
BstAPI GCANNNNNTGC 1 cut(s) 1511
BstAUI TGTACA 1 cut(s) 1393
BstC8I GCNNGC 2 cut(s) 142, 1731
BstF5I GGATG 3 cut(s) 184, 671, 1525
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 9 cut(s) 525, 808, 816, 1081, 1182, 1192, 1309, 1603, 1627
BstMBI GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
BstMWI GCNNNNNNNGC 4 cut(s) 464, 1484, 1511, 1670
BstNI CCWGG 3 cut(s) 758, 972, 1374
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 4 cut(s) 756, 970, 1372, 1747
BstSFI CTRYAG 3 cut(s) 408, 573, 630
BstSLI GKGCMC 1 cut(s) 1651
BstV1I GCAGC 3 cut(s) 861, 1336, 1673
BstV2I GAAGAC 2 cut(s) 533, 1550
BstX2I RGATCY 5 cut(s) 522, 813, 1189, 1600, 1624
BstYI RGATCY 5 cut(s) 522, 813, 1189, 1600, 1624
Bsu36I CCTNAGG 1 cut(s) 229
BsuI GTATCC 2 cut(s) 722, 878
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 3 cut(s) 184, 671, 1525
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 142, 1731
CaiI CAGNNNCTG 1 cut(s) 1028
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 233, 644, 793
Csp6I GTAC 5 cut(s) 165, 399, 908, 1394, 1573
CviAII CATG 1 cut(s) 733
CviQI GTAC 5 cut(s) 165, 399, 908, 1394, 1573
DpnI GATC 9 cut(s) 524, 807, 815, 1080, 1181, 1191, 1308, 1602, 1626
DpnII GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
Eam1104I CTCTTC 2 cut(s) 41, 530
EarI CTCTTC 2 cut(s) 41, 530
Eco32I GATATC 2 cut(s) 156, 895
Eco47I GGWCC 3 cut(s) 233, 644, 793
Eco57I CTGAAG 2 cut(s) 645, 734
Eco81I CCTNAGG 1 cut(s) 229
EcoO109I RGGNCCY 2 cut(s) 233, 793
EcoRI GAATTC 1 cut(s) 1426
EcoRII CCWGG 3 cut(s) 756, 970, 1372
EcoRV GATATC 2 cut(s) 156, 895
EcoT22I ATGCAT 1 cut(s) 1213
FaeI CATG 1 cut(s) 736
FatI CATG 1 cut(s) 732
FauI CCCGC 2 cut(s) 879, 1606
FauNDI CATATG 1 cut(s) 1390
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 3 cut(s) 875, 1350, 1662
FokI GGATG 3 cut(s) 191, 658, 1532
Fsp4HI GCNGC 3 cut(s) 875, 1350, 1662
FspBI CTAG 2 cut(s) 797, 920
GlaI GCGC 1 cut(s) 145
GluI GCNGC 3 cut(s) 875, 1350, 1662
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 1062
HapII CCGG 2 cut(s) 1674, 1748
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 5 cut(s) 113, 263, 538, 668, 1159
HpaII CCGG 2 cut(s) 1674, 1748
HphI GGTGA 2 cut(s) 404, 937
Hpy166II GTNNAC 3 cut(s) 443, 928, 944
Hpy188III TCNNGA 6 cut(s) 520, 526, 1041, 1183, 1221, 1641
Hpy8I GTNNAC 3 cut(s) 443, 928, 944
HpyAV CCTTC 8 cut(s) 22, 523, 549, 701, 1152, 1180, 1355, 1661
HpyCH4III ACNGT 2 cut(s) 505, 823
HpyCH4IV ACGT 3 cut(s) 244, 339, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 464, 1484, 1511, 1670
HpySE526I ACGT 3 cut(s) 244, 339, 689
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 1 cut(s) 144
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
LmnI GCTCC 4 cut(s) 344, 464, 1280, 1492
Lsp1109I GCAGC 3 cut(s) 861, 1336, 1673
LweI GCATC 5 cut(s) 169, 202, 339, 1318, 1600
MaeI CTAG 2 cut(s) 797, 920
MaeII ACGT 3 cut(s) 244, 339, 689
MaeIII GTNAC 2 cut(s) 295, 799
MalI GATC 9 cut(s) 524, 807, 815, 1080, 1181, 1191, 1308, 1602, 1626
MboI GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
MfeI CAATTG 4 cut(s) 300, 330, 663, 1500
MflI RGATCY 5 cut(s) 522, 813, 1189, 1600, 1624
MhlI GDGCHC 2 cut(s) 1285, 1651
MlyI GAGTC 4 cut(s) 122, 272, 547, 677
Mph1103I ATGCAT 1 cut(s) 1213
MroXI GAANNNNTTC 2 cut(s) 834, 1410
MseI TTAA 4 cut(s) 567, 948, 963, 1272
MspA1I CMGCKG 2 cut(s) 874, 1733
MspI CCGG 2 cut(s) 1674, 1748
MspR9I CCNGG 4 cut(s) 758, 972, 1374, 1749
MunI CAATTG 4 cut(s) 300, 330, 663, 1500
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 3 cut(s) 758, 972, 1374
MwoI GCNNNNNNNGC 4 cut(s) 464, 1484, 1511, 1670
NciI CCSGG 1 cut(s) 1749
NdeI CATATG 1 cut(s) 1390
NdeII GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 3 cut(s) 400, 1371, 1384
NsiI ATGCAT 1 cut(s) 1213
NspI RCATGY 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 380
PciI ACATGT 1 cut(s) 732
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 2 cut(s) 834, 1410
PfeI GAWTC 1 cut(s) 1159
PfoI TCCNGGA 2 cut(s) 970, 1747
PkrI GCNGC 3 cut(s) 876, 1351, 1663
PleI GAGTC 4 cut(s) 121, 271, 546, 676
PpsI GAGTC 4 cut(s) 121, 271, 546, 676
PpuMI RGGWCCY 2 cut(s) 233, 793
PscI ACATGT 1 cut(s) 732
PsiI TTATAA 1 cut(s) 45
Psp5II RGGWCCY 2 cut(s) 233, 793
Psp6I CCWGG 3 cut(s) 756, 970, 1372
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 3 cut(s) 756, 970, 1372
PspN4I GGNNCC 3 cut(s) 400, 1371, 1384
PspPI GGNCC 3 cut(s) 233, 644, 793
PspPPI RGGWCCY 2 cut(s) 233, 793
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 5 cut(s) 522, 813, 1189, 1600, 1624
PvuII CAGCTG 1 cut(s) 1733
RsaI GTAC 5 cut(s) 166, 400, 909, 1395, 1574
RsaNI GTAC 5 cut(s) 165, 399, 908, 1394, 1573
SaqAI TTAA 4 cut(s) 567, 948, 963, 1272
SatI GCNGC 3 cut(s) 875, 1350, 1662
Sau3AI GATC 9 cut(s) 522, 805, 813, 1078, 1179, 1189, 1306, 1600, 1624
Sau96I GGNCC 3 cut(s) 233, 644, 793
ScaI AGTACT 1 cut(s) 909
SchI GAGTC 4 cut(s) 122, 272, 547, 677
ScrFI CCNGG 4 cut(s) 758, 972, 1374, 1749
SduI GDGCHC 2 cut(s) 1285, 1651
SfaNI GCATC 5 cut(s) 169, 202, 339, 1318, 1600
SfcI CTRYAG 3 cut(s) 408, 573, 630
SinI GGWCC 3 cut(s) 233, 644, 793
SmlI CTYRAG 2 cut(s) 1061, 1692
SmoI CTYRAG 2 cut(s) 1061, 1692
SpeI ACTAGT 1 cut(s) 919
SsiI CCGC 3 cut(s) 872, 1254, 1613
SspI AATATT 1 cut(s) 1173
SspMI CTAG 2 cut(s) 797, 920
StyD4I CCNGG 4 cut(s) 756, 970, 1372, 1747
TaaI ACNGT 2 cut(s) 505, 823
TaiI ACGT 3 cut(s) 247, 342, 692
TaqI TCGA 1 cut(s) 1220
TatI WGTACW 2 cut(s) 907, 1393
TfiI GAWTC 1 cut(s) 1159
Tru1I TTAA 4 cut(s) 567, 948, 963, 1272
Tru9I TTAA 4 cut(s) 567, 948, 963, 1272
TscAI CASTG 1 cut(s) 412
TseI GCWGC 3 cut(s) 874, 1349, 1661
TspDTI ATGAA 5 cut(s) 392, 525, 595, 736, 1611
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 233, 644, 793
XapI RAATTY 2 cut(s) 1406, 1426
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 1675
XmnI GAANNNNTTC 2 cut(s) 834, 1410
XspI CTAG 2 cut(s) 797, 920
ZrmI AGTACT 1 cut(s) 909
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.