Rh5BG147900
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005115
Physical Location & Seq
Forward (+)
15169812 .. 15174432
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG147900.1

Sequence Viewer

Length: 1512 bp
ATGTGTCTCTCTGTGTCTTCCTCTCAGCTCTTCCTTTACACACCTCTCTTCTCTCTGCAGAGCTTTTCTCAGAAGCAAAGAGTATGTGGGTTTTGGAGAAAGCCACAGGCTTTGAGGAGTCTTGTGGTCAGAGCAGGCCCAAAGAAGATATCTTTTGGTAAAGAATGCAGAGAGGGATTGCAAATTGGGATAGATAAGCTTGCTGATGCTGTTTCTCTTACATTAGGACCTAGAGGACGTAATGTTGTTCTTTCTGAGTCTGAAAAAGTGAGAGTGATAAATGATGGTGTAACAATTGTTCAGTCAATAGAGCTAGCAGATACAATTGAGAACGCGGGAGCAATGCTAATCCAAGAGGTTGCAAGTAAAATGAATAATTTGGCCGGTGATGGTACTACCACTGCGATCATTTTGACACGAGAAATGATCAAAGGTGGATTATTGGCAGTGGCTTTTGGGGCTAACCCAATTTCTTTGAAGAAAGGAATGGAGAAGACTGTTAGTGAATTGGTCAAGGTCTTAAAGGAGAAAAGTCTTCCCGTAAAAGGAAGGAATGATATTAAAGCTGTGGCTTCAATTTCTGCCGGAAATGATGAATTCATAGGAAACTTGATTGCAGAAGCTATAGAAAAGATTGGTCCTGATGGAGTAATCTCAATTGAGTCGTCCTCATCATTTGAAACGTCTGTTTTAGTCGAAGAAGGACTAAAGTTTGACAAGGGTTACATGTCCTCCCACTTCATTACTAATCAAGAAAGATCTGTTGTGGAGTTTGACAAGGCTAAGGTCCTGGTAACTGATCAAAAGATTTCAACTGTTAAAGAAATTGTTCCTTTGCTGGAAAAGATAACCCAATTGAGTATCCCGCTGCTAATCATTGCAGAGGATATCTCAAGGCCAGTACTGGAGACACTAGTGGTGAATAAAATGCAGGGTTTACTTAATGTTGCTGTTGTTAAGTGCCCTGGATTTGGAGAGCGGAAGAAAGCTCTTTTGCAAGATATTGCACTTATGACAGGTGCTGATTTTCTCTCTGGAGATTTTGGTTTTACCCTTGACAGTGCAACATCAGATCAACTTGGAATTGCAAGAAAGGTGACAATAACAAGTAATTCAACAACCATAGTTGCTGACCCTTCTACCAAAGCAGAGATTCAGGCAAGAATATTGCAGATCAAGAAGGATCTAGCAGAAACTGAAAATGCAAACCTGTCGAGAAAGCTCTCCGAAAGAATTGCTAAACTCTGTGGTGGAGTTGCCGTAATTAAGGTAGGAGCACATACTGAGGTGGAACTTGAAGATCGCAAACTCAGAATTGAGGATGCAAAGAATGCCACATTTGCTGCTATGGAGGAAGGGGTAGTGCCTGGTGGTGGTGCCACTTATGTACATCTGTCAGAATTGATTCCTGTCATAAAGAATTCTATGGAAGATTCTGATGAGCAGATTGGTGCCGACATTATAGCGAAGGTGGGCTCTCCTTATATTTCCTTAACTCATACTTGCAAGTAG

Protein Analysis

503

Amino Acids

54.11

Weight (kDa)

6.24

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 67 - 490 5.1e-56 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1376, 1451
AccBSI CCGCTC 1 cut(s) 979
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 335, 866, 979
AclWI GGATC 1 cut(s) 1191
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 2 cut(s) 596, 1420
AfaI GTAC 3 cut(s) 394, 903, 1389
AfiI CCNNNNNNNGG 3 cut(s) 545, 971, 1373
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 6 cut(s) 478, 576, 680, 813, 1116, 1298
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 3 cut(s) 789, 964, 1366
AluBI AGCT 8 cut(s) 28, 63, 199, 313, 566, 623, 989, 1222
AluI AGCT 8 cut(s) 28, 63, 199, 313, 566, 623, 989, 1222
Alw21I GWGCWC 1 cut(s) 1279
Alw26I GTCTC 2 cut(s) 11, 902
AlwI GGATC 1 cut(s) 1191
AlwNI CAGNNNCTG 2 cut(s) 1022, 1196
AoxI GGCC 3 cut(s) 136, 381, 896
ApeKI GCWGC 2 cut(s) 868, 1343
ApoI RAATTY 2 cut(s) 596, 1420
Asp700I GAANNNNTTC 2 cut(s) 828, 1404
AspS9I GGNCC 4 cut(s) 137, 227, 638, 787
AsuHPI GGTGA 3 cut(s) 398, 931, 1108
AsuNHI GCTAGC 1 cut(s) 313
AvaII GGWCC 3 cut(s) 227, 638, 787
BaeGI GKGCMC 1 cut(s) 965
BanI GGYRCC 2 cut(s) 1376, 1451
BanII GRGCYC 1 cut(s) 1478
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 3 cut(s) 9, 500, 527
Bbv12I GWGCWC 1 cut(s) 1279
BbvI GCAGC 2 cut(s) 855, 1330
BccI CCATC 3 cut(s) 278, 383, 638
BceAI ACGGC 1 cut(s) 1244
BcgI CGANNNNNNTGC 4 cut(s) 1194, 1217, 1228, 1251
BciT130I CCWGG 3 cut(s) 791, 966, 1368
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 2 cut(s) 426, 799
BcoDI GTCTC 2 cut(s) 11, 902
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 4 cut(s) 231, 314, 914, 1187
BfmI CTRYAG 2 cut(s) 56, 624
BfuI GTATCC 1 cut(s) 872
BglII AGATCT 1 cut(s) 758
BisI GCNGC 2 cut(s) 869, 1344
BlsI GCNGC 2 cut(s) 870, 1345
BmcAI AGTACT 1 cut(s) 903
Bme1390I CCNGG 3 cut(s) 791, 966, 1368
Bme18I GGWCC 3 cut(s) 227, 638, 787
BmgT120I GGNCC 4 cut(s) 137, 227, 638, 787
BmiI GGNNCC 2 cut(s) 1378, 1453
BmrFI CCNGG 3 cut(s) 791, 966, 1368
BmsI GCATC 2 cut(s) 196, 1312
BmtI GCTAGC 1 cut(s) 317
BpiI GAAGAC 3 cut(s) 9, 500, 527
BplI GAGNNNNNCTC 6 cut(s) 52, 84, 653, 685, 875, 907
BpmI CTGGAG 2 cut(s) 926, 1056
Bpu10I CCTNAGC 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 877
BsaJI CCNNGG 1 cut(s) 964
BsaXI ACNNNNNCTCC 4 cut(s) 716, 746, 1245, 1275
Bsc4I CCNNNNNNNGG 3 cut(s) 545, 971, 1373
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 899, 909
Bse3DI GCAATG 2 cut(s) 348, 876
BseBI CCWGG 3 cut(s) 791, 966, 1368
BseDI CCNNGG 1 cut(s) 964
BseGI GGATG 1 cut(s) 1327
BseLI CCNNNNNNNGG 3 cut(s) 545, 971, 1373
BseMI GCAATG 2 cut(s) 348, 876
BseMII CTCAG 5 cut(s) 38, 83, 246, 1275, 1324
BseNI ACTGG 2 cut(s) 899, 909
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 2 cut(s) 855, 1330
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 138, 383, 898
BshNI GGYRCC 2 cut(s) 1376, 1451
BsiHKAI GWGCWC 1 cut(s) 1279
BsiSI CCGG 2 cut(s) 384, 585
BslI CCNNNNNNNGG 3 cut(s) 545, 971, 1373
BsmAI GTCTC 2 cut(s) 11, 902
BsmI GAATGC 2 cut(s) 170, 1336
BsnI GGCC 3 cut(s) 138, 383, 898
Bsp1286I GDGCHC 3 cut(s) 965, 1279, 1478
Bsp1407I TGTACA 1 cut(s) 1387
Bsp143I GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
BspACI CCGC 3 cut(s) 335, 866, 979
BspANI GGCC 3 cut(s) 138, 383, 898
BspCNI CTCAG 5 cut(s) 37, 82, 247, 1276, 1323
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 1378, 1453
BspMAI CTGCAG 1 cut(s) 60
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 1191
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 2 cut(s) 1376, 1451
BsrBI CCGCTC 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 348, 876
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 1387
BsrI ACTGG 2 cut(s) 899, 909
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 964
BssMI GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 3 cut(s) 791, 966, 1368
Bst4CI ACNGT 3 cut(s) 499, 817, 1061
Bst6I CTCTTC 2 cut(s) 35, 53
BstAPI GCANNNNNTGC 1 cut(s) 1331
BstAUI TGTACA 1 cut(s) 1387
BstC8I GCNNGC 3 cut(s) 136, 201, 315
BstDEI CTNAG 6 cut(s) 24, 69, 255, 783, 1284, 1310
BstF5I GGATG 1 cut(s) 1327
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 8 cut(s) 408, 429, 761, 802, 1075, 1176, 1186, 1303
BstMAI GTCTC 2 cut(s) 11, 902
BstMBI GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
BstMWI GCNNNNNNNGC 3 cut(s) 458, 1331, 1340
BstNI CCWGG 3 cut(s) 791, 966, 1368
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 3 cut(s) 789, 964, 1366
BstSFI CTRYAG 2 cut(s) 56, 624
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 855, 1330
BstV2I GAAGAC 3 cut(s) 9, 500, 527
BstX2I RGATCY 2 cut(s) 758, 1183
BstYI RGATCY 2 cut(s) 758, 1183
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 3 cut(s) 138, 383, 898
BtsCI GGATG 1 cut(s) 1327
BtsI GCAGTG 2 cut(s) 399, 453
BtsIMutI CAGTG 3 cut(s) 399, 453, 1066
Cac8I GCNNGC 3 cut(s) 136, 201, 315
CaiI CAGNNNCTG 2 cut(s) 1022, 1196
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 4 cut(s) 137, 227, 638, 787
Csp6I GTAC 3 cut(s) 393, 902, 1388
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 1 cut(s) 727
CviQI GTAC 3 cut(s) 393, 902, 1388
DdeI CTNAG 6 cut(s) 24, 69, 255, 783, 1284, 1310
DpnI GATC 8 cut(s) 407, 428, 760, 801, 1074, 1175, 1185, 1302
DpnII GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 35, 53
EarI CTCTTC 2 cut(s) 35, 53
Eco24I GRGCYC 1 cut(s) 1478
Eco32I GATATC 2 cut(s) 150, 889
Eco47I GGWCC 3 cut(s) 227, 638, 787
EcoO109I RGGNCCY 2 cut(s) 227, 787
EcoRI GAATTC 2 cut(s) 596, 1420
EcoRII CCWGG 3 cut(s) 789, 964, 1366
EcoRV GATATC 2 cut(s) 150, 889
EcoT38I GRGCYC 1 cut(s) 1478
FaeI CATG 1 cut(s) 730
FatI CATG 1 cut(s) 726
FauI CCCGC 2 cut(s) 328, 873
FbaI TGATCA 2 cut(s) 426, 799
Fnu4HI GCNGC 2 cut(s) 869, 1344
FokI GGATG 1 cut(s) 1334
FriOI GRGCYC 1 cut(s) 1478
Fsp4HI GCNGC 2 cut(s) 869, 1344
FspBI CTAG 4 cut(s) 231, 314, 914, 1187
GluI GCNGC 2 cut(s) 869, 1344
GsuI CTGGAG 2 cut(s) 926, 1056
HaeIII GGCC 3 cut(s) 138, 383, 898
HapII CCGG 2 cut(s) 384, 585
Hin1II CATG 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 6 cut(s) 118, 257, 662, 1153, 1405, 1433
HpaII CCGG 2 cut(s) 384, 585
HphI GGTGA 3 cut(s) 398, 931, 1108
Hpy166II GTNNAC 1 cut(s) 938
Hpy188I TCNGA 9 cut(s) 72, 131, 256, 262, 1072, 1228, 1313, 1399, 1438
Hpy188III TCNNGA 5 cut(s) 641, 752, 1035, 1177, 1215
Hpy8I GTNNAC 1 cut(s) 938
HpyAV CCTTC 6 cut(s) 543, 695, 1146, 1174, 1349, 1462
HpyCH4III ACNGT 3 cut(s) 499, 817, 1061
HpyCH4IV ACGT 2 cut(s) 238, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 1331, 1340
HpyF3I CTNAG 6 cut(s) 24, 69, 255, 783, 1284, 1310
HpySE526I ACGT 2 cut(s) 238, 683
Hsp92II CATG 1 cut(s) 730
Ksp22I TGATCA 2 cut(s) 426, 799
Kzo9I GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 338, 1274
Lsp1109I GCAGC 2 cut(s) 855, 1330
LweI GCATC 2 cut(s) 196, 1312
MaeI CTAG 4 cut(s) 231, 314, 914, 1187
MaeII ACGT 2 cut(s) 238, 683
MaeIII GTNAC 4 cut(s) 289, 722, 793, 1096
MalI GATC 8 cut(s) 407, 428, 760, 801, 1074, 1175, 1185, 1302
MbiI CCGCTC 1 cut(s) 979
MboI GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
MfeI CAATTG 4 cut(s) 294, 324, 657, 854
MflI RGATCY 2 cut(s) 758, 1183
MhlI GDGCHC 3 cut(s) 965, 1279, 1478
MlyI GAGTC 3 cut(s) 127, 266, 671
MroXI GAANNNNTTC 2 cut(s) 828, 1404
MseI TTAA 7 cut(s) 521, 561, 819, 942, 957, 1266, 1493
MspA1I CMGCKG 1 cut(s) 868
MspI CCGG 2 cut(s) 384, 585
MspR9I CCNGG 3 cut(s) 791, 966, 1368
MunI CAATTG 4 cut(s) 294, 324, 657, 854
Mva1269I GAATGC 2 cut(s) 170, 1336
MvaI CCWGG 3 cut(s) 791, 966, 1368
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 458, 1331, 1340
NdeII GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
NheI GCTAGC 1 cut(s) 313
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 2 cut(s) 1378, 1453
NmuCI GTSAC 1 cut(s) 1096
NspI RCATGY 1 cut(s) 730
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 35
PctI GAATGC 2 cut(s) 170, 1336
PdmI GAANNNNTTC 2 cut(s) 828, 1404
PfeI GAWTC 3 cut(s) 1153, 1405, 1433
PkrI GCNGC 2 cut(s) 870, 1345
PleI GAGTC 3 cut(s) 126, 265, 670
PpsI GAGTC 3 cut(s) 126, 265, 670
PpuMI RGGWCCY 2 cut(s) 227, 787
PscI ACATGT 1 cut(s) 726
Psp5II RGGWCCY 2 cut(s) 227, 787
Psp6I CCWGG 3 cut(s) 789, 964, 1366
PspGI CCWGG 3 cut(s) 789, 964, 1366
PspN4I GGNNCC 2 cut(s) 1378, 1453
PspPI GGNCC 4 cut(s) 137, 227, 638, 787
PspPPI RGGWCCY 2 cut(s) 227, 787
PsrI GAACNNNNNNTAC 2 cut(s) 282, 314
PstI CTGCAG 1 cut(s) 60
PstNI CAGNNNCTG 2 cut(s) 1022, 1196
PsuI RGATCY 2 cut(s) 758, 1183
RsaI GTAC 3 cut(s) 394, 903, 1389
RsaNI GTAC 3 cut(s) 393, 902, 1388
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 7 cut(s) 521, 561, 819, 942, 957, 1266, 1493
SatI GCNGC 2 cut(s) 869, 1344
Sau3AI GATC 8 cut(s) 405, 426, 758, 799, 1072, 1173, 1183, 1300
Sau96I GGNCC 4 cut(s) 137, 227, 638, 787
ScaI AGTACT 1 cut(s) 903
SchI GAGTC 3 cut(s) 127, 266, 671
ScrFI CCNGG 3 cut(s) 791, 966, 1368
SduI GDGCHC 3 cut(s) 965, 1279, 1478
SfaNI GCATC 2 cut(s) 196, 1312
SfcI CTRYAG 2 cut(s) 56, 624
SinI GGWCC 3 cut(s) 227, 638, 787
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
SpeI ACTAGT 1 cut(s) 913
SsiI CCGC 3 cut(s) 335, 866, 979
SspI AATATT 1 cut(s) 1167
SspMI CTAG 4 cut(s) 231, 314, 914, 1187
StyD4I CCNGG 3 cut(s) 789, 964, 1366
TaaI ACNGT 3 cut(s) 499, 817, 1061
TaiI ACGT 2 cut(s) 241, 686
TaqI TCGA 2 cut(s) 696, 1214
TatI WGTACW 2 cut(s) 901, 1387
TfiI GAWTC 3 cut(s) 1153, 1405, 1433
Tru1I TTAA 7 cut(s) 521, 561, 819, 942, 957, 1266, 1493
Tru9I TTAA 7 cut(s) 521, 561, 819, 942, 957, 1266, 1493
TscAI CASTG 3 cut(s) 406, 453, 1066
TseFI GTSAC 1 cut(s) 1096
TseI GCWGC 2 cut(s) 868, 1343
Tsp45I GTSAC 1 cut(s) 1096
TspDTI ATGAA 4 cut(s) 386, 589, 609, 730
TspRI CASTG 3 cut(s) 406, 453, 1066
VpaK11BI GGWCC 3 cut(s) 227, 638, 787
XapI RAATTY 2 cut(s) 596, 1420
XceI RCATGY 1 cut(s) 730
XmnI GAANNNNTTC 2 cut(s) 828, 1404
XspI CTAG 4 cut(s) 231, 314, 914, 1187
ZrmI AGTACT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.