MD15G1422100.v1.1
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
52391582 .. 52401995
10414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1422100.v1.1.491

Sequence Viewer

Length: 1767 bp
ATGTCTATCTCCTTCTCCTCCTCCTCCTCTCAACTCTTCTTTCAAAAATCTTTCTTCTCTCTTCAGAGCAATTTTCAGAAGCAACGAGTAGCTGGGTTTTGGAGAAGGCCACAGGCTTTGAGGAGGCATGTGATCAAAACCGGCGCAAAGAAGATATCTTTTGGTACAGAATGCAGGGATGCCTTACAAACTGGGATAGATAAACTTGCTGATGCTGTTTCCCTTACCTTAGGACCTAAAGGACGTAATGTTGTTCTTTCTGAGTCTGAAAAACTGAAAGTGATTAATGATGGTGTAACAATTGTTCAGTCCATAGAGCTATCAGATACAATTGAGAACGTGGGAGCGATGCTAATCCAAGAGGTTGCAAAGAAAATGAATAATTTGGCAGGTGATGGTACCACCACTGCAGTCATTTTGACAAGAGAAATGATCAAAGGTGGACTTTTAGCAGTAGCTTTTGGAGCTAACCCAATTTCTCTGAAGAAAGGAATGGATAGGACTGTCAATGAATTGGTCAAGATCTTGAAGGAGAAGAGTCTTCCGGTAAAAGGAAGGAATGACATTAAAGCTGTAGCTTCAATTTCTGCTGGAAATGACGAGTTCATCGGTAATTTGATTGCTGAAGCTATAGAAAAGATTGGCCCTGATGGAGTGATCTCAATTGAGTCATCCTCATCATTTGAAACGTCTGTTTTAGTTGAAGAAGGGCTGAAGTTTGACAAGGGATACATGTCCTCCCACTTCATTACGAACCAGGAAAAATCTCTTGTGGAGTTTGACAAAGCTAAGGTCCTAGTAACTGATCACAAGATTTCAACTGTTAGAGAAATTGTTCCTTTATTGGAAAAGACAACCCAACTGAGTATCCCGCTGCTAATCATTGCAGAGGATATCTCAAAGCAAGTACTGGAAACACTGGTGGTGAACAAAAAGCAGGGTTTACTAAAAGTCGCTGTTGTTAAATGTCCTGGATTTGCAGAGGGGAAAAAGGCTATTTTGCAAGATATTGCACTTATGACAGGTGCTGATTTTCTCTCTGGAGATTTTGGTTTGACCCTTGAGAGTGCAACATCAGATCAACTTGGAATTGCAAGAAAAGTGAAAATAACAAGTAATTCAACAACGATAGTTGCAGACCCTTCTACTAAAGCTGAGATTCAGGCAAGAATATTGCAGATCAAGAAGGATCTGGCAGAAACAGAAAATGCAAACCTGTCGAGAAAGCTCTCCGAAAGAATTGCCAAACTTTGCGGTGGAGTTGCTGTAATTAAGGTAGGAGCACATACGGAGGTCGAACTTGAAGATCGCAAACTCAGAATCGAGGATGCAAAGAATGCTACATTTGCTGCTATGGAGGAAGGAGTGGTGCCTGGTGGTGGTGCCACATATGTACATCTCTCAGAATTTATTCCTTCCATCAAGGATTCTATGGAAGATTTAGATGAGCAGATTGGTGCTGACCTTGTAGCAAAGGCTCTACTTGCTCCTGCAAAAGCAATTGCAACTAATGCAGGGGATGATGGAGAAGTTGTTGTGGAGAAGACTAAAAGTTCTGATTGGAGAGTTGGGTACAATGCAATGACAGGGAACTATGAAGATCTCCCTGATGGAGGAGTTATAGATCCTTGTAGGGTTTCAAGATGTGCCCTTCAAATTGCGGTCTCCATTGCCGGAGTGGTTCTTACAACTCAAGCCGTATTGGTGGAGAAAACAAAGACGAAAAAGCCCGCTGTTCCTTTTGTTCCAGGAATAACTCCTCAGTGA

Protein Analysis

589

Amino Acids

63.09

Weight (kDa)

6.99

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 69 - 571 3.3e-74 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 3 cut(s) 398, 1369, 1382
AciI CCGC 4 cut(s) 872, 1254, 1661, 1731
AclWI GGATC 2 cut(s) 1197, 1619
AcsI RAATTY 1 cut(s) 1406
AcuI CTGAAG 4 cut(s) 47, 503, 645, 734
AfaI GTAC 5 cut(s) 166, 400, 909, 1395, 1574
AfiI CCNNNNNNNGG 3 cut(s) 551, 1379, 1613
AflIII ACRYGT 1 cut(s) 732
AjnI CCWGG 4 cut(s) 756, 970, 1372, 1747
Alw21I GWGCWC 1 cut(s) 1285
Alw26I GTCTC 1 cut(s) 1669
AlwI GGATC 2 cut(s) 1197, 1619
AlwNI CAGNNNCTG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 107, 643
ApeKI GCWGC 2 cut(s) 874, 1349
ApoI RAATTY 1 cut(s) 1406
ArsI GACNNNNNNTTYG 2 cut(s) 777, 809
AseI ATTAAT 1 cut(s) 285
Asp700I GAANNNNTTC 2 cut(s) 834, 1410
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 3 cut(s) 233, 644, 793
AsuHPI GGTGA 2 cut(s) 404, 937
AvaII GGWCC 2 cut(s) 233, 793
AxyI CCTNAGG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 1651
BanI GGYRCC 3 cut(s) 398, 1369, 1382
BbsI GAAGAC 2 cut(s) 533, 1550
Bbv12I GWGCWC 1 cut(s) 1285
BbvI GCAGC 2 cut(s) 861, 1336
BccI CCATC 6 cut(s) 284, 389, 644, 1427, 1517, 1604
BceAI ACGGC 1 cut(s) 1682
BcgI CGANNNNNNTGC 4 cut(s) 1200, 1223, 1234, 1257
BciT130I CCWGG 4 cut(s) 758, 972, 1374, 1749
BciVI GTATCC 2 cut(s) 722, 878
BclI TGATCA 3 cut(s) 132, 432, 805
BcoDI GTCTC 1 cut(s) 1669
BfaI CTAG 1 cut(s) 797
BfmI CTRYAG 3 cut(s) 408, 573, 630
BfuAI ACCTGC 1 cut(s) 380
BfuI GTATCC 2 cut(s) 722, 878
BglII AGATCT 2 cut(s) 522, 1600
BisI GCNGC 2 cut(s) 875, 1350
BlsI GCNGC 2 cut(s) 876, 1351
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 4 cut(s) 758, 972, 1374, 1749
Bme18I GGWCC 2 cut(s) 233, 793
BmgT120I GGNCC 3 cut(s) 233, 644, 793
BmiI GGNNCC 3 cut(s) 400, 1371, 1384
BmrFI CCNGG 4 cut(s) 758, 972, 1374, 1749
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 4 cut(s) 169, 202, 339, 1318
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 533, 1550
BplI GAGNNNNNCTC 4 cut(s) 659, 691, 881, 913
BpmI CTGGAG 1 cut(s) 1062
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 1082, 1677
BsaBI GATNNNNATC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 1669
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 6 cut(s) 722, 752, 1251, 1281, 1518, 1548
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 1379, 1613
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 3 cut(s) 196, 915, 924
Bse21I CCTNAGG 1 cut(s) 229
Bse3DI GCAATG 3 cut(s) 882, 1587, 1668
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 4 cut(s) 758, 972, 1374, 1749
BseGI GGATG 4 cut(s) 184, 671, 1333, 1525
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 551, 1379, 1613
BseMI GCAATG 3 cut(s) 882, 1587, 1668
BseMII CTCAG 5 cut(s) 252, 854, 1146, 1330, 1416
BseNI ACTGG 3 cut(s) 196, 915, 924
BseRI GAGGAG 7 cut(s) 7, 10, 13, 16, 136, 1629, 1749
BseSI GKGCMC 1 cut(s) 1651
BseXI GCAGC 2 cut(s) 861, 1336
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 2 cut(s) 109, 645
BshNI GGYRCC 3 cut(s) 398, 1369, 1382
BsiHKAI GWGCWC 1 cut(s) 1285
BsiSI CCGG 3 cut(s) 141, 545, 1674
BslI CCNNNNNNNGG 3 cut(s) 551, 1379, 1613
BsmAI GTCTC 1 cut(s) 1669
BsmI GAATGC 2 cut(s) 176, 1342
BsnI GGCC 2 cut(s) 109, 645
Bso31I GGTCTC 1 cut(s) 1669
Bsp1286I GDGCHC 2 cut(s) 1285, 1651
Bsp1407I TGTACA 1 cut(s) 1393
BspACI CCGC 4 cut(s) 872, 1254, 1661, 1731
BspANI GGCC 2 cut(s) 109, 645
BspCNI CTCAG 5 cut(s) 253, 855, 1147, 1329, 1415
BspLI GGNNCC 3 cut(s) 400, 1371, 1384
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 1197, 1619
BspT107I GGYRCC 3 cut(s) 398, 1369, 1382
BspTNI GGTCTC 1 cut(s) 1669
BsrDI GCAATG 3 cut(s) 882, 1587, 1668
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 1393
BsrI ACTGG 3 cut(s) 196, 915, 924
BssAI RCCGGY 1 cut(s) 140
Bst2UI CCWGG 4 cut(s) 758, 972, 1374, 1749
Bst4CI ACNGT 2 cut(s) 505, 823
Bst6I CTCTTC 3 cut(s) 41, 66, 530
BstAPI GCANNNNNTGC 2 cut(s) 1337, 1511
BstAUI TGTACA 1 cut(s) 1393
BstC8I GCNNGC 1 cut(s) 1731
BstDEI CTNAG 8 cut(s) 229, 261, 789, 863, 1155, 1316, 1402, 1761
BstENI CCTNNNNNAGG 1 cut(s) 1611
BstF5I GGATG 4 cut(s) 184, 671, 1333, 1525
BstHHI GCGC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 1669
BstMWI GCNNNNNNNGC 5 cut(s) 464, 1337, 1346, 1484, 1511
BstNI CCWGG 4 cut(s) 758, 972, 1374, 1749
BstNSI RCATGY 2 cut(s) 131, 736
BstSCI CCNGG 4 cut(s) 756, 970, 1372, 1747
BstSFI CTRYAG 3 cut(s) 408, 573, 630
BstSLI GKGCMC 1 cut(s) 1651
BstV1I GCAGC 2 cut(s) 861, 1336
BstV2I GAAGAC 2 cut(s) 533, 1550
BstX2I RGATCY 4 cut(s) 522, 1189, 1600, 1624
BstYI RGATCY 4 cut(s) 522, 1189, 1600, 1624
Bsu36I CCTNAGG 1 cut(s) 229
BsuI GTATCC 2 cut(s) 722, 878
BsuRI GGCC 2 cut(s) 109, 645
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 4 cut(s) 184, 671, 1333, 1525
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 405, 917
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 1 cut(s) 1731
CaiI CAGNNNCTG 1 cut(s) 1028
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 233, 644, 793
Csp6I GTAC 5 cut(s) 165, 399, 908, 1394, 1573
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 2 cut(s) 128, 733
CviQI GTAC 5 cut(s) 165, 399, 908, 1394, 1573
DdeI CTNAG 8 cut(s) 229, 261, 789, 863, 1155, 1316, 1402, 1761
Eam1104I CTCTTC 3 cut(s) 41, 66, 530
EarI CTCTTC 3 cut(s) 41, 66, 530
Eco31I GGTCTC 1 cut(s) 1669
Eco32I GATATC 2 cut(s) 156, 895
Eco47I GGWCC 2 cut(s) 233, 793
Eco57I CTGAAG 4 cut(s) 47, 503, 645, 734
Eco81I CCTNAGG 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 1611
EcoO109I RGGNCCY 2 cut(s) 233, 793
EcoRII CCWGG 4 cut(s) 756, 970, 1372, 1747
EcoRV GATATC 2 cut(s) 156, 895
FaeI CATG 2 cut(s) 131, 736
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 2 cut(s) 127, 732
FauI CCCGC 2 cut(s) 879, 1738
FauNDI CATATG 1 cut(s) 1390
FbaI TGATCA 3 cut(s) 132, 432, 805
Fnu4HI GCNGC 2 cut(s) 875, 1350
FokI GGATG 4 cut(s) 191, 658, 1340, 1532
Fsp4HI GCNGC 2 cut(s) 875, 1350
FspBI CTAG 1 cut(s) 797
GlaI GCGC 1 cut(s) 145
GluI GCNGC 2 cut(s) 875, 1350
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 1062
HaeIII GGCC 2 cut(s) 109, 645
HapII CCGG 3 cut(s) 141, 545, 1674
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 131, 736
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 6 cut(s) 263, 538, 668, 1159, 1320, 1427
HpaII CCGG 3 cut(s) 141, 545, 1674
HphI GGTGA 2 cut(s) 404, 937
Hpy166II GTNNAC 3 cut(s) 443, 928, 944
Hpy188III TCNNGA 6 cut(s) 520, 526, 1041, 1183, 1221, 1641
Hpy8I GTNNAC 3 cut(s) 443, 928, 944
HpyCH4III ACNGT 2 cut(s) 505, 823
HpyCH4IV ACGT 3 cut(s) 244, 339, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 1337, 1346, 1484, 1511
HpyF3I CTNAG 8 cut(s) 229, 261, 789, 863, 1155, 1316, 1402, 1761
HpySE526I ACGT 3 cut(s) 244, 339, 689
Hsp92II CATG 2 cut(s) 131, 736
HspAI GCGC 1 cut(s) 144
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 3 cut(s) 132, 432, 805
LmnI GCTCC 4 cut(s) 344, 464, 1280, 1492
Lsp1109I GCAGC 2 cut(s) 861, 1336
LweI GCATC 4 cut(s) 169, 202, 339, 1318
MaeI CTAG 1 cut(s) 797
MaeII ACGT 3 cut(s) 244, 339, 689
MaeIII GTNAC 2 cut(s) 295, 799
MfeI CAATTG 4 cut(s) 300, 330, 663, 1500
MflI RGATCY 4 cut(s) 522, 1189, 1600, 1624
MhlI GDGCHC 2 cut(s) 1285, 1651
MlyI GAGTC 3 cut(s) 272, 547, 677
MroXI GAANNNNTTC 2 cut(s) 834, 1410
MseI TTAA 4 cut(s) 285, 567, 963, 1272
MspA1I CMGCKG 2 cut(s) 874, 1733
MspI CCGG 3 cut(s) 141, 545, 1674
MspR9I CCNGG 4 cut(s) 758, 972, 1374, 1749
MunI CAATTG 4 cut(s) 300, 330, 663, 1500
Mva1269I GAATGC 2 cut(s) 176, 1342
MvaI CCWGG 4 cut(s) 758, 972, 1374, 1749
MwoI GCNNNNNNNGC 5 cut(s) 464, 1337, 1346, 1484, 1511
NdeI CATATG 1 cut(s) 1390
NlaIII CATG 2 cut(s) 131, 736
NlaIV GGNNCC 3 cut(s) 400, 1371, 1384
NspI RCATGY 2 cut(s) 131, 736
PaqCI CACCTGC 1 cut(s) 380
PciI ACATGT 1 cut(s) 732
PctI GAATGC 2 cut(s) 176, 1342
PdmI GAANNNNTTC 2 cut(s) 834, 1410
PfeI GAWTC 3 cut(s) 1159, 1320, 1427
PfoI TCCNGGA 2 cut(s) 970, 1747
PkrI GCNGC 2 cut(s) 876, 1351
PleI GAGTC 3 cut(s) 271, 546, 676
PpsI GAGTC 3 cut(s) 271, 546, 676
PpuMI RGGWCCY 2 cut(s) 233, 793
PscI ACATGT 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 285
Psp5II RGGWCCY 2 cut(s) 233, 793
Psp6I CCWGG 4 cut(s) 756, 970, 1372, 1747
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 4 cut(s) 756, 970, 1372, 1747
PspN4I GGNNCC 3 cut(s) 400, 1371, 1384
PspPI GGNCC 3 cut(s) 233, 644, 793
PspPPI RGGWCCY 2 cut(s) 233, 793
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 4 cut(s) 522, 1189, 1600, 1624
RsaI GTAC 5 cut(s) 166, 400, 909, 1395, 1574
RsaNI GTAC 5 cut(s) 165, 399, 908, 1394, 1573
SaqAI TTAA 4 cut(s) 285, 567, 963, 1272
SatI GCNGC 2 cut(s) 875, 1350
Sau96I GGNCC 3 cut(s) 233, 644, 793
ScaI AGTACT 1 cut(s) 909
SchI GAGTC 3 cut(s) 272, 547, 677
ScrFI CCNGG 4 cut(s) 758, 972, 1374, 1749
SduI GDGCHC 2 cut(s) 1285, 1651
SfaNI GCATC 4 cut(s) 169, 202, 339, 1318
SfcI CTRYAG 3 cut(s) 408, 573, 630
SinI GGWCC 2 cut(s) 233, 793
SmlI CTYRAG 2 cut(s) 1061, 1692
SmoI CTYRAG 2 cut(s) 1061, 1692
SsiI CCGC 4 cut(s) 872, 1254, 1661, 1731
SspI AATATT 1 cut(s) 1173
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 4 cut(s) 756, 970, 1372, 1747
TaaI ACNGT 2 cut(s) 505, 823
TaiI ACGT 3 cut(s) 247, 342, 692
TaqI TCGA 3 cut(s) 1220, 1296, 1323
TatI WGTACW 2 cut(s) 907, 1393
TfiI GAWTC 3 cut(s) 1159, 1320, 1427
Tru1I TTAA 4 cut(s) 285, 567, 963, 1272
Tru9I TTAA 4 cut(s) 285, 567, 963, 1272
TscAI CASTG 2 cut(s) 412, 924
TseI GCWGC 2 cut(s) 874, 1349
TspDTI ATGAA 5 cut(s) 392, 525, 595, 736, 1611
TspGWI ACGGA 1 cut(s) 1304
TspRI CASTG 2 cut(s) 412, 924
VpaK11BI GGWCC 2 cut(s) 233, 793
VspI ATTAAT 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 1611
XapI RAATTY 1 cut(s) 1406
XceI RCATGY 2 cut(s) 131, 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 1675
XmnI GAANNNNTTC 2 cut(s) 834, 1410
XspI CTAG 1 cut(s) 797
ZrmI AGTACT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.