Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

31308815 .. 31315171

Gene Structure 6357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1248600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGCTGGCTCGGTTTATTCTATCTCGGAAATATGGCACTGGTATTGCAATTTCCGCCAATTCTCAGATTGCTCAGTATGCTCGGGTTGGCCAAATTGAGAAAGCCCGAAGGGTGTTTGATCAAATGCACGATAAAAATATTGTGTCTTGGAACTCAATGGTGGGAGGTTACTTCCAAAGTAATCAGCCAGGAGAAGCCCGGAGGTTGTTTGATAAAATGCAGGAGCGGAATACAGTTTCTTGGAATGGTTTGATATCTGGGTATGTCAAGAATGGGATGTTTAGTGAGGCTAGGAAAGTGTTTGATTCAATGCCCGAAAGGAATATTGTTTCGTGGACGTCGATGGTTCGAGGGTACGTGCAAGAGGGTATGATTTCGGAGGCTGAATCACTCTTCTGGGAAATGCCTGAAAAGAATGTTGTTTCGTGGACAGTGATGTTGGGTGGCCTGATTCAAGAGGGTAGGATTGATGATGCCCGTAGGCTTTATGATATGATGCCTGACAAGGATGTCGTGGCAAGGACGAATATGATTGGTGGGTATTTTCAGGTTGGACGTTTGGCTGAAGCACGTGAGATTTTTGATGAGATGCCGCGTAGGAATGTTGTTTCCTGGACTATGATGGTATCTGGATATGTGCATAACCAACAAGTGGATATTGCTAGAAAGCTTTTTGAAGTGATGCCAGAGAAAAATGAGGTGTCTTGGACAGCAATGCTGATAGGTTACACTCAGTGTGGACGGATCATAGAGGCTTCAGAGCTTTTTCAAGCAATGCCTATTAAGTCAGTTGTTGCTTGTAATGCCATGATACTTGGGTATGGTCAAAATGGAGAGGTAGCTAAGGCAAGGGAAGTTTTTGATAATATGAGAGATAGGGATGATCGGACATGGAGTGCGATGATTAAAGTTTACGAACGGAAAGGTTTTGAATTGGAAGCCCTTGACTTGTTTGCTTTGATACAAAGAGAAGATATAAGGCCGAATTTCCCTTCTTTGATAAGTGTTCTATCTGTTTGTGGCAGCTTGGCGAATCTTGATTTTGGTCGACAGATTCATGCCCAGTTGGTGAGGAACCGGTTTGATCTTGATGTATATGTTGCTTCAGTATTGATGACAATGTATGTTAAATGTGGCAACCTTGTGAAGGCAAAACAGGTGTTTGACAGGTTTTCTGCAAAGGATATTGTTATGTGGAACTCAATGATCACTGGTTATGCCCAACATGGTTTAGGAGATAAAGCTCTACAAGTGTTTGATGAGATGTGCTCTTTGGGCATAGCAGCAGATGAAATCACCTTTATTGGAGTTCTTTCAGCGTGTAGCTATAGTGGGAATGTAGAAAAAGGTCTTGAGATTTTTGAAACGATGAAATCAAAGTACCAGGTGGAGCCAGGAACTGCACATTTTGCATGTATGGTTGATCTGCTTGGTCGAGCAGGGCAAGTAAAGGAGGCAATGGATTTAATTAATAGGATGCCAGTGGAAGCAGATGCGATTGTTTGGGGTGCCTTATTAGGTGCATGCAGACAGCACAAGGAAATGGACTTGGCGGAAGTTGCAGCAAAGAAACTTACAGAGCTTGAGCCTGATAAAGCAGGGCCTTACGTCTTGCTATCAAATATTTATGCATCCCAGGGTAGATGGCATGATGTTGCAGAGGTGAGGGAAAACATGAGAGCAAGAAGTCTTCGCAAGTCACCTGGCTGTAGCTGGATTGCGGTGGAGAAAAATGTACATATGTTTACTGGGGGAGAGAGCACGGGACACCCAGAACATGAGATGATCATGAGAGAGTTACAGAGACTGGGTGTATTATTAAGAGAAGCTGGTTACTGCCCTGATGGGAGCTTTGTATTGCATGATGTAGAAGAAGAAGAGAAGGCGCACAGCTTGGGTTATCATAGTGAGAAATTGGCCATAGCATATGGGCTTCTGAAGGTGCCAAAAGGGATGCCAATTCGTGTGATGAAGAACCTTCGGGTTTGTGGGGATTGCCATTCTGCAATTAAATTAATAGCTAAAGTTACACAGAGAGAGATTGTTTTGAGGGATGCTAACAGATTTCATCATTTTAAGGATGGTGTGTGTTCTTGCAGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

704

Amino Acids

79.56

Weight (kDa)

6.78

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 77	7e-07	PPR repeat family
PPR	PF01535	48 - 77	6.3e-07	PPR repeat
PPR_2	PF13041	76 - 109	8.4e-08	PPR repeat family
PPR	PF01535	79 - 109	5.5e-09	PPR repeat
PPR	PF01535	110 - 140	2.4e-08	PPR repeat
PPR_2	PF13041	263 - 293	9.1e-06	PPR repeat family
PPR_2	PF13041	394 - 441	2.4e-11	PPR repeat family
PPR	PF01535	397 - 427	7.6e-10	PPR repeat
E_motif	PF20431	512 - 573	4.5e-23	E motif
DYW_deaminase	PF14432	611 - 703	9e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AatII	GACGTC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	1508, 1942
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccBSI	CCGCTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	1048
AccII	CGCG	1 cut(s)	595
AciI	CCGC	5 cut(s)	54, 226, 593, 1553, 1721
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	88, 1917
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	4 cut(s)	585, 741, 1089, 1958
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	356, 1382, 1737
AfiI	CCNNNNNNNGG	2 cut(s)	652, 1147
AgeI	ACCGGT	1 cut(s)	1077
AgsI	TTSAA	6 cut(s)	309, 455, 677, 770, 932, 1364
AjnI	CCWGG	6 cut(s)	187, 611, 1383, 1393, 1635, 1702
Alw21I	GWGCWC	2 cut(s)	1271, 1763
Alw26I	GTCTC	2 cut(s)	1798, 2094
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	2 cut(s)	1400, 1807
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	5 cut(s)	88, 445, 980, 1601, 1917
ApeKI	GCWGC	3 cut(s)	1023, 1283, 1562
ApoI	RAATTY	1 cut(s)	985
AseI	ATTAAT	2 cut(s)	1470, 2015
AsiGI	ACCGGT	1 cut(s)	1077
AspLEI	GCGC	1 cut(s)	1888
AspS9I	GGNCC	1 cut(s)	1601
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	4 cut(s)	1081, 1288, 1675, 1692
AvaI	CYCGRG	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	803, 836
BalI	TGGCCA	2 cut(s)	90, 1919
BanI	GGYRCC	2 cut(s)	1508, 1942
BbrPI	CACGTG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	1682
Bbv12I	GWGCWC	2 cut(s)	1271, 1763
BbvI	GCAGC	3 cut(s)	1035, 1295, 1574
BccI	CCATC	5 cut(s)	337, 616, 1638, 1838, 2075
BciT130I	CCWGG	6 cut(s)	189, 613, 1385, 1395, 1637, 1704
BclI	TGATCA	3 cut(s)	118, 1206, 1785
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	1798, 2094
BfaI	CTAG	2 cut(s)	291, 663
BfmI	CTRYAG	2 cut(s)	1327, 1708
BisI	GCNGC	4 cut(s)	593, 1024, 1284, 1563
BlsI	GCNGC	4 cut(s)	594, 1025, 1285, 1564
Bme1390I	CCNGG	7 cut(s)	189, 199, 613, 1385, 1395, 1637, 1704
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	1601
BmiI	GGNNCC	4 cut(s)	1076, 1392, 1510, 1944
BmrFI	CCNGG	7 cut(s)	189, 199, 613, 1385, 1395, 1637, 1704
BmrI	ACTGGG	3 cut(s)	1057, 1758, 1817
BmsI	GCATC	9 cut(s)	463, 486, 579, 672, 1467, 1483, 1640, 1944, 2044
BmuI	ACTGGG	3 cut(s)	1057, 1758, 1817
BpiI	GAAGAC	1 cut(s)	1682
BplI	GAGNNNNNCTC	2 cut(s)	1253, 1285
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	2 cut(s)	1373, 1604
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	2 cut(s)	358, 572
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	1635, 1636
BsaWI	WCCGGW	1 cut(s)	1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 1147
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	6 cut(s)	43, 1063, 1216, 1481, 1753, 1812
Bse3DI	GCAATG	3 cut(s)	720, 780, 1464
BseBI	CCWGG	6 cut(s)	189, 613, 1385, 1395, 1637, 1704
BseDI	CCNNGG	2 cut(s)	1635, 1636
BseGI	GGATG	8 cut(s)	282, 514, 886, 1482, 1631, 1959, 2059, 2086
BseLI	CCNNNNNNNGG	2 cut(s)	652, 1147
BseMI	GCAATG	3 cut(s)	720, 780, 1464
BseMII	CTCAG	3 cut(s)	77, 86, 746
BseNI	ACTGG	6 cut(s)	43, 1063, 1216, 1481, 1753, 1812
BseXI	GCAGC	3 cut(s)	1035, 1295, 1574
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	1 cut(s)	595
BshFI	GGCC	5 cut(s)	90, 447, 982, 1603, 1919
BshNI	GGYRCC	2 cut(s)	1508, 1942
BshTI	ACCGGT	1 cut(s)	1077
BsiHKAI	GWGCWC	2 cut(s)	1271, 1763
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	199, 1078
BslFI	GGGAC	1 cut(s)	1779
BslI	CCNNNNNNNGG	2 cut(s)	652, 1147
BsmAI	GTCTC	2 cut(s)	1798, 2094
BsmFI	GGGAC	1 cut(s)	1779
BsnI	GGCC	5 cut(s)	90, 447, 982, 1603, 1919
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	1271, 1763
Bsp1407I	TGTACA	1 cut(s)	1735
Bsp143I	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
BspACI	CCGC	5 cut(s)	54, 226, 593, 1553, 1721
BspANI	GGCC	5 cut(s)	90, 447, 982, 1603, 1919
BspCNI	CTCAG	3 cut(s)	76, 85, 745
BspFNI	CGCG	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	1788
BspLI	GGNNCC	4 cut(s)	1076, 1392, 1510, 1944
BspPI	GGATC	1 cut(s)	752
BspT107I	GGYRCC	2 cut(s)	1508, 1942
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	3 cut(s)	720, 780, 1464
BsrFI	RCCGGY	1 cut(s)	1077
BsrGI	TGTACA	1 cut(s)	1735
BsrI	ACTGG	6 cut(s)	43, 1063, 1216, 1481, 1753, 1812
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	1635, 1636
BssMI	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	6 cut(s)	189, 613, 1385, 1395, 1637, 1704
Bst4CI	ACNGT	2 cut(s)	235, 433
Bst6I	CTCTTC	2 cut(s)	398, 1872
BstACI	GRCGYC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	1409
BstAUI	TGTACA	1 cut(s)	1735
BstBAI	YACGTR	2 cut(s)	358, 572
BstC8I	GCNNGC	2 cut(s)	6, 1525
BstDEI	CTNAG	4 cut(s)	63, 72, 732, 843
BstENI	CCTNNNNNAGG	1 cut(s)	1145
BstF5I	GGATG	8 cut(s)	282, 514, 886, 1482, 1631, 1959, 2059, 2086
BstFNI	CGCG	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	1888
BstKTI	GATC	7 cut(s)	121, 747, 886, 1087, 1209, 1426, 1788
BstMAI	GTCTC	2 cut(s)	1798, 2094
BstMBI	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 77, 803, 1275, 1409, 1559
BstNI	CCWGG	6 cut(s)	189, 613, 1385, 1395, 1637, 1704
BstNSI	RCATGY	2 cut(s)	1416, 1527
BstSCI	CCNGG	7 cut(s)	187, 197, 611, 1383, 1393, 1635, 1702
BstSFI	CTRYAG	2 cut(s)	1327, 1708
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	3 cut(s)	1035, 1295, 1574
BstV2I	GAAGAC	1 cut(s)	1682
BsuRI	GGCC	5 cut(s)	90, 447, 982, 1603, 1919
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	8 cut(s)	282, 514, 886, 1482, 1631, 1959, 2059, 2086
BtsIMutI	CAGTG	5 cut(s)	36, 438, 740, 1209, 1488
Cac8I	GCNNGC	2 cut(s)	6, 1525
CaiI	CAGNNNCTG	2 cut(s)	1400, 1807
CciI	TCATGA	1 cut(s)	1788
CfoI	GCGC	1 cut(s)	1888
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	1 cut(s)	1601
CsiI	ACCWGGT	1 cut(s)	1383
Csp6I	GTAC	3 cut(s)	355, 1381, 1736
CspAI	ACCGGT	1 cut(s)	1077
CviQI	GTAC	3 cut(s)	355, 1381, 1736
DdeI	CTNAG	4 cut(s)	63, 72, 732, 843
DpnI	GATC	7 cut(s)	120, 746, 885, 1086, 1208, 1425, 1787
DpnII	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
DraIII	CACNNNGTG	1 cut(s)	735
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	2 cut(s)	88, 1917
Eam1104I	CTCTTC	2 cut(s)	398, 1872
EarI	CTCTTC	2 cut(s)	398, 1872
EciI	GGCGGA	2 cut(s)	43, 1568
Eco32I	GATATC	1 cut(s)	255
Eco57I	CTGAAG	4 cut(s)	585, 741, 1089, 1958
Eco72I	CACGTG	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	1145
EcoO109I	RGGNCCY	1 cut(s)	1601
EcoRII	CCWGG	6 cut(s)	187, 611, 1383, 1393, 1635, 1702
EcoRV	GATATC	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	1633
FaqI	GGGAC	1 cut(s)	1779
FauNDI	CATATG	2 cut(s)	1740, 1927
FbaI	TGATCA	3 cut(s)	118, 1206, 1785
FblI	GTMKAC	1 cut(s)	1048
Fnu4HI	GCNGC	4 cut(s)	593, 1024, 1284, 1563
FokI	GGATG	8 cut(s)	289, 521, 893, 1489, 1618, 1966, 2066, 2093
Fsp4HI	GCNGC	4 cut(s)	593, 1024, 1284, 1563
FspBI	CTAG	2 cut(s)	291, 663
GlaI	GCGC	1 cut(s)	1887
GluI	GCNGC	4 cut(s)	593, 1024, 1284, 1563
HaeIII	GGCC	5 cut(s)	90, 447, 982, 1603, 1919
HapII	CCGG	2 cut(s)	199, 1078
HhaI	GCGC	1 cut(s)	1888
Hin1I	GRCGYC	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	1886
HinP1I	GCGC	1 cut(s)	1886
HincII	GTYRAC	1 cut(s)	1049
HindII	GTYRAC	1 cut(s)	1049
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	5 cut(s)	305, 386, 451, 1033, 1054
HpaII	CCGG	2 cut(s)	199, 1078
HphI	GGTGA	4 cut(s)	1081, 1288, 1675, 1692
Hpy166II	GTNNAC	6 cut(s)	336, 429, 740, 913, 1049, 1746
Hpy188I	TCNGA	6 cut(s)	27, 66, 379, 760, 888, 1938
Hpy188III	TCNNGA	7 cut(s)	268, 455, 630, 1037, 1088, 1352, 1789
Hpy8I	GTNNAC	6 cut(s)	336, 429, 740, 913, 1049, 1746
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	6 cut(s)	102, 1002, 1141, 1876, 1933, 1988
HpyCH4III	ACNGT	2 cut(s)	235, 433
HpyCH4IV	ACGT	5 cut(s)	338, 357, 556, 571, 1608
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 77, 803, 1275, 1409, 1559
HpyF3I	CTNAG	4 cut(s)	63, 72, 732, 843
HpySE526I	ACGT	5 cut(s)	338, 357, 556, 571, 1608
Hsp92I	GRCGYC	1 cut(s)	338
HspAI	GCGC	1 cut(s)	1886
Ksp22I	TGATCA	3 cut(s)	118, 1206, 1785
Kzo9I	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
LmnI	GCTCC	3 cut(s)	223, 1390, 1848
Lsp1109I	GCAGC	3 cut(s)	1035, 1295, 1574
LweI	GCATC	9 cut(s)	463, 486, 579, 672, 1467, 1483, 1640, 1944, 2044
MabI	ACCWGGT	1 cut(s)	1383
MaeI	CTAG	2 cut(s)	291, 663
MaeII	ACGT	5 cut(s)	338, 357, 556, 571, 1608
MaeIII	GTNAC	6 cut(s)	167, 725, 1698, 1797, 1832, 2026
MalI	GATC	7 cut(s)	120, 746, 885, 1086, 1208, 1425, 1787
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
MboII	GAAGA	7 cut(s)	385, 983, 1682, 1883, 1886, 1889, 1984
MhlI	GDGCHC	2 cut(s)	1271, 1763
MlsI	TGGCCA	2 cut(s)	90, 1919
MluNI	TGGCCA	2 cut(s)	90, 1919
MmeI	TCCRAC	1 cut(s)	532
Mox20I	TGGCCA	2 cut(s)	90, 1919
Mph1103I	ATGCAT	1 cut(s)	1633
MscI	TGGCCA	2 cut(s)	90, 1919
MseI	TTAA	9 cut(s)	783, 906, 1128, 1466, 1470, 1820, 2010, 2015, 2076
Msp20I	TGGCCA	2 cut(s)	90, 1919
MspI	CCGG	2 cut(s)	199, 1078
MspR9I	CCNGG	7 cut(s)	189, 199, 613, 1385, 1395, 1637, 1704
MvaI	CCWGG	6 cut(s)	189, 613, 1385, 1395, 1637, 1704
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	6 cut(s)	53, 77, 803, 1275, 1409, 1559
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	2 cut(s)	1740, 1927
NdeII	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
NlaIV	GGNNCC	4 cut(s)	1076, 1392, 1510, 1944
NmuCI	GTSAC	1 cut(s)	1698
NsiI	ATGCAT	1 cut(s)	1633
NspI	RCATGY	2 cut(s)	1416, 1527
PacI	TTAATTAA	1 cut(s)	1470
PaeI	GCATGC	1 cut(s)	1527
PagI	TCATGA	1 cut(s)	1788
PasI	CCCWGGG	1 cut(s)	1636
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	5 cut(s)	305, 386, 451, 1033, 1054
PflMI	CCANNNNNTGG	1 cut(s)	652
PfoI	TCCNGGA	1 cut(s)	611
PinAI	ACCGGT	1 cut(s)	1077
PkrI	GCNGC	4 cut(s)	594, 1025, 1285, 1564
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
Ppu21I	YACGTR	2 cut(s)	358, 572
PshBI	ATTAAT	2 cut(s)	1470, 2015
Psp6I	CCWGG	6 cut(s)	187, 611, 1383, 1393, 1635, 1702
PspCI	CACGTG	1 cut(s)	572
PspGI	CCWGG	6 cut(s)	187, 611, 1383, 1393, 1635, 1702
PspN4I	GGNNCC	4 cut(s)	1076, 1392, 1510, 1944
PspPI	GGNCC	1 cut(s)	1601
PstNI	CAGNNNCTG	2 cut(s)	1400, 1807
RsaI	GTAC	3 cut(s)	356, 1382, 1737
RsaNI	GTAC	3 cut(s)	355, 1381, 1736
SalI	GTCGAC	1 cut(s)	1047
SaqAI	TTAA	9 cut(s)	783, 906, 1128, 1466, 1470, 1820, 2010, 2015, 2076
SatI	GCNGC	4 cut(s)	593, 1024, 1284, 1563
Sau3AI	GATC	7 cut(s)	118, 744, 883, 1084, 1206, 1423, 1785
Sau96I	GGNCC	1 cut(s)	1601
ScrFI	CCNGG	7 cut(s)	189, 199, 613, 1385, 1395, 1637, 1704
SduI	GDGCHC	2 cut(s)	1271, 1763
SexAI	ACCWGGT	1 cut(s)	1383
SfaNI	GCATC	9 cut(s)	463, 486, 579, 672, 1467, 1483, 1640, 1944, 2044
SfcI	CTRYAG	2 cut(s)	1327, 1708
SmlI	CTYRAG	2 cut(s)	1352, 1583
SmoI	CTYRAG	2 cut(s)	1352, 1583
SphI	GCATGC	1 cut(s)	1527
SsiI	CCGC	5 cut(s)	54, 226, 593, 1553, 1721
SspI	AATATT	3 cut(s)	139, 325, 1624
SspMI	CTAG	2 cut(s)	291, 663
StyD4I	CCNGG	7 cut(s)	187, 197, 611, 1383, 1393, 1635, 1702
TaaI	ACNGT	2 cut(s)	235, 433
TaiI	ACGT	5 cut(s)	341, 360, 559, 574, 1611
TaqI	TCGA	4 cut(s)	341, 349, 1048, 1435
TatI	WGTACW	1 cut(s)	1735
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	5 cut(s)	305, 386, 451, 1033, 1054
Tru1I	TTAA	9 cut(s)	783, 906, 1128, 1466, 1470, 1820, 2010, 2015, 2076
Tru9I	TTAA	9 cut(s)	783, 906, 1128, 1466, 1470, 1820, 2010, 2015, 2076
TscAI	CASTG	5 cut(s)	43, 438, 740, 1216, 1488
TseFI	GTSAC	1 cut(s)	1698
TseI	GCWGC	3 cut(s)	1023, 1283, 1562
Tsp45I	GTSAC	1 cut(s)	1698
TspDTI	ATGAA	5 cut(s)	1046, 1305, 1385, 1985, 2057
TspGWI	ACGGA	2 cut(s)	757, 934
TspRI	CASTG	5 cut(s)	43, 438, 740, 1216, 1488
Van91I	CCANNNNNTGG	1 cut(s)	652
VspI	ATTAAT	2 cut(s)	1470, 2015
XagI	CCTNNNNNAGG	1 cut(s)	1145
XapI	RAATTY	1 cut(s)	985
XceI	RCATGY	2 cut(s)	1416, 1527
XmiI	GTMKAC	1 cut(s)	1048
XspI	CTAG	2 cut(s)	291, 663
ZraI	GACGTC	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.