Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

10357929 .. 10358790

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1084600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGGGTGGCATGATACAAGAGGGTCGGATTGATGATGCTTGTAGGCTTTATGATATGATGCCCAAGAAGGATGTTGTGGCAAGAACTAATATGATTGGTGGGTGTTTTCAGATTGACCGTTTGGCTGAAGCATGTGAGATTTTTTATGAGATGCCGCGTAGGAATGTTGTTTCCTGGACCACGATGGTATCTAGGAATCTTTTTCAAGCAATGCCGATTAAGTCAGTTGTTGCTTGTAATGCCATGATACTTGGGTATGGCGAAAATGGAGAGGTAGCTAAAGCAAGGGAAGAGTTTGATAATATGAGAGATAGGGATGAGCGGACATGGAGTGCGATGATTAAATTTTATGAATGCAAAGGTTTTGAATTGGAAGCCCTTGACTTGTTTGCTTTGATGCAAAGAGAAGGTATAAGGCTGAATTTCCCTTCTTTGATAAGTGTTCTATCTGTTTGTGGCAGCTTGGCAAATCATGATTATGCCCAGTTGGCAAAACAAGTATTTGACAGGTTTTCTGCAAAGGATATTGTTATGTGGAACTCAATGATTACTGGTTATGCCCAGCATGGTTTGGGAGATAAAGCTCTGCAAGTGTTTGAAGAGATGTGCTCTTTGAGCATAGCAGCCAATGAAATCACATTTGTTGGAATTCTTTCAGCGTGTAGCTATAGTGGGAAGGTAGAAAAAGGTCTTGAGATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

236

Amino Acids

26.49

Weight (kDa)

5.12

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	175 - 222	1.4e-11	PPR repeat family
PPR_1	PF12854	176 - 203	6.8e-06	PPR repeat
PPR	PF01535	178 - 206	1.2e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	158, 325
AcsI	RAATTY	3 cut(s)	347, 424, 651
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	209, 371, 602
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	281, 465, 587, 669
AluI	AGCT	4 cut(s)	281, 465, 587, 669
Alw21I	GWGCWC	1 cut(s)	614
ApeKI	GCWGC	2 cut(s)	462, 626
ApoI	RAATTY	3 cut(s)	347, 424, 651
Asp700I	GAANNNNTTC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	180
BaeI	ACNNNNGTAYC	4 cut(s)	174, 207, 242, 275
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	474, 638
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	670
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	158, 463, 627
BlsI	GCNGC	3 cut(s)	159, 464, 628
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	4 cut(s)	28, 51, 144, 390
BmuI	ACTGGG	1 cut(s)	481
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
Bse1I	ACTGG	2 cut(s)	487, 559
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	79, 325
BseMI	GCAATG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	487, 559
BseXI	GCAGC	2 cut(s)	474, 638
BseYI	CCCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	614
BspACI	CCGC	2 cut(s)	158, 325
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	475
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	487, 559
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	288, 597
BstF5I	GGATG	2 cut(s)	79, 325
BstFNI	CGCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 491, 618
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	474, 638
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	79, 325
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	6 cut(s)	13, 135, 247, 330, 476, 569
CviJI	RGCY	9 cut(s)	49, 128, 281, 380, 421, 465, 587, 629, 669
CviKI_1	RGCY	9 cut(s)	49, 128, 281, 380, 421, 465, 587, 629, 669
Eam1104I	CTCTTC	2 cut(s)	288, 597
EarI	CTCTTC	2 cut(s)	288, 597
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	6 cut(s)	16, 138, 250, 333, 479, 572
FatI	CATG	6 cut(s)	12, 134, 246, 329, 475, 568
Fnu4HI	GCNGC	3 cut(s)	158, 463, 627
FokI	GGATG	2 cut(s)	86, 332
Fsp4HI	GCNGC	3 cut(s)	158, 463, 627
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	3 cut(s)	158, 463, 627
GsaI	CCCAGC	1 cut(s)	568
Hin1II	CATG	6 cut(s)	16, 138, 250, 333, 479, 572
HinfI	GANTC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	30, 114
Hpy188III	TCNNGA	2 cut(s)	476, 695
HpyAV	CCTTC	4 cut(s)	64, 404, 441, 673
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	360, 403, 521, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 491, 618
Hsp92II	CATG	6 cut(s)	16, 138, 250, 333, 479, 572
LpnPI	CCDG	6 cut(s)	163, 190, 496, 500, 540, 578
Lsp1109I	GCAGC	2 cut(s)	474, 638
LweI	GCATC	4 cut(s)	28, 51, 144, 390
MaeI	CTAG	1 cut(s)	195
MbiI	CCGCTC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	305, 614
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	4 cut(s)	347, 371, 424, 651
MmeI	TCCRAC	2 cut(s)	8, 628
MnlI	CCTC	2 cut(s)	16, 268
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	3 cut(s)	222, 345, 706
MslI	CAYNNNNRTG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	3 cut(s)	242, 491, 618
NlaIII	CATG	6 cut(s)	16, 138, 250, 333, 479, 572
NspI	RCATGY	1 cut(s)	138
PagI	TCATGA	1 cut(s)	475
PctI	GAATGC	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	159, 464, 628
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	222, 345, 706
SatI	GCNGC	3 cut(s)	158, 463, 627
Sau96I	GGNCC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	4 cut(s)	28, 51, 144, 390
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	4 cut(s)	347, 371, 424, 651
SsiI	CCGC	2 cut(s)	158, 325
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	4 cut(s)	347, 371, 424, 651
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	222, 345, 706
Tru9I	TTAA	3 cut(s)	222, 345, 706
TseI	GCWGC	2 cut(s)	462, 626
TspDTI	ATGAA	2 cut(s)	369, 648
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	3 cut(s)	347, 424, 651
XceI	RCATGY	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.