Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

7461175 .. 7462173

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACAATGTATGTTAAATGTGGCAACCTTGTGAAGGCAAAACTAGTATTTGACAGGTTTTCTGCAAAGGATATTGTTATGTGGAACTCAACGATCACTGGTTATGCCCAACATGGTTTGGGAGATAAAGCTCTACGAGTGTTTGAAGAGATGTGCTCTTTGCACATAGCAGCCGATGAAATCACCTTTGTTGGAATTCTTTCAGCATGTAGCTATAGTGGGAAGGTAGAAAAAGGTCTTGAGATTTTTGAAACAATGAAATCGAAGTACCAGGTGGAGCCTGGAACTGCACATTATGCTTGTATGGTTGATCTGCTTGGTCGAGCAGGGCAAGTAAAGGAGGCAATAGATTTAATTAAAAAAATGCCAGTGGAAGCAGATGCAATTGTTTGGGGTGCCTTATTAGGTGCATGCAGACAGCACATGCAAATGGACTTGGCGGAAGTTTCAGCAAAGAAACTTACAGAGCTTGAGCCCGAAAAAGCAGGGCCTTACGTCTTGCTATCAAATATTTATGCATCCCAGGGTAGATGGCATGATGCTGCAGAGCTGAGGGAAAACATGAGAGCCAGAAGCCTTCGCAAGTCACCTGGCTGTAGCTGGATTGAGGTGGAGAAAAATGTACATATGTTTACTGGGGGAGAGGGCACGGGGCACCCTGAACATGAGATGATCATGAGAGAGTTACAGAGACTGGGTGTATTATTAAGAGAAGCTGGTTACTGCCCTGATGGCAGCTTTGTATTGCATGATGTAGAAGAAGAAGAGAAGGAGCACAGCTTGGGTTATCATAGTGAGAAACTGGCCATAGCATATGGGCTCCTGAAGGTGCCACAAGGGATGCCCATTCGTGTGATGAAGAACCTTCGGGTTTGTGGAGATTGCCATTCTGCAATTAAATTAATAGCTAAAGTTACGCAGAGAGAGATAGTTTTGAGGGATGCTAATAGATTTCATCATTTTAAGGATGGCGTGTGTTCTTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

333

Amino Acids

37.19

Weight (kDa)

6.54

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	23 - 70	1.9e-09	PPR repeat family
PPR	PF01535	26 - 53	3.4e-07	PPR repeat
E_motif	PF20431	141 - 203	2.2e-21	E motif
DYW_deaminase	PF14432	240 - 332	2.7e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	395, 654, 829
AciI	CCGC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	269, 624
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	146, 251
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	4 cut(s)	270, 280, 522, 589
AluBI	AGCT	9 cut(s)	131, 213, 469, 550, 600, 716, 738, 780, 908
AluI	AGCT	9 cut(s)	131, 213, 469, 550, 600, 716, 738, 780, 908
Alw21I	GWGCWC	2 cut(s)	158, 777
Alw26I	GTCTC	2 cut(s)	685, 981
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	488, 804
ApeKI	GCWGC	3 cut(s)	170, 542, 735
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	902
Asp700I	GAANNNNTTC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	175, 579
BaeGI	GKGCMC	2 cut(s)	650, 657
BalI	TGGCCA	1 cut(s)	806
BanI	GGYRCC	3 cut(s)	395, 654, 829
BanII	GRGCYC	2 cut(s)	477, 822
Bbv12I	GWGCWC	2 cut(s)	158, 777
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	3 cut(s)	182, 529, 747
BccI	CCATC	3 cut(s)	525, 725, 962
BciT130I	CCWGG	4 cut(s)	272, 282, 524, 591
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	685, 981
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	3 cut(s)	214, 543, 595
BglI	GCCNNNNNGGC	1 cut(s)	732
BisI	GCNGC	3 cut(s)	171, 543, 736
BlsI	GCNGC	3 cut(s)	172, 544, 737
Bme1390I	CCNGG	4 cut(s)	272, 282, 524, 591
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	5 cut(s)	279, 397, 656, 821, 831
BmrFI	CCNGG	4 cut(s)	272, 282, 524, 591
BmrI	ACTGGG	2 cut(s)	645, 704
BmsI	GCATC	5 cut(s)	370, 527, 529, 831, 931
BmuI	ACTGGG	2 cut(s)	645, 704
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	260, 491
BsaJI	CCNNGG	2 cut(s)	522, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	5 cut(s)	103, 368, 640, 699, 807
BseBI	CCWGG	4 cut(s)	272, 282, 524, 591
BseDI	CCNNGG	2 cut(s)	522, 523
BseGI	GGATG	4 cut(s)	518, 846, 946, 973
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	5 cut(s)	103, 368, 640, 699, 807
BseSI	GKGCMC	2 cut(s)	650, 657
BseXI	GCAGC	3 cut(s)	182, 529, 747
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	490, 806
BshNI	GGYRCC	3 cut(s)	395, 654, 829
BsiHKAI	GWGCWC	2 cut(s)	158, 777
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	685, 981
BsnI	GGCC	2 cut(s)	490, 806
Bsp1286I	GDGCHC	6 cut(s)	158, 477, 650, 657, 777, 822
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	93, 310, 672
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	490, 806
BspCNI	CTCAG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	5 cut(s)	279, 397, 656, 821, 831
BspMAI	CTGCAG	1 cut(s)	547
BspT107I	GGYRCC	3 cut(s)	395, 654, 829
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	5 cut(s)	103, 368, 640, 699, 807
BssECI	CCNNGG	2 cut(s)	522, 523
BssMI	GATC	3 cut(s)	93, 310, 672
Bst2UI	CCWGG	4 cut(s)	272, 282, 524, 591
Bst6I	CTCTTC	2 cut(s)	141, 759
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	4 cut(s)	518, 846, 946, 973
BstKTI	GATC	3 cut(s)	96, 313, 675
BstMAI	GTCTC	2 cut(s)	685, 981
BstMBI	GATC	3 cut(s)	93, 310, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 732
BstNI	CCWGG	4 cut(s)	272, 282, 524, 591
BstNSI	RCATGY	3 cut(s)	210, 414, 427
BstSCI	CCNGG	4 cut(s)	270, 280, 522, 589
BstSFI	CTRYAG	3 cut(s)	214, 543, 595
BstSLI	GKGCMC	2 cut(s)	650, 657
BstV1I	GCAGC	3 cut(s)	182, 529, 747
BsuRI	GGCC	2 cut(s)	490, 806
BtsCI	GGATG	4 cut(s)	518, 846, 946, 973
BtsIMutI	CAGTG	2 cut(s)	96, 375
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	488
CsiI	ACCWGGT	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	268, 623
CviAII	CATG	9 cut(s)	113, 207, 411, 424, 536, 562, 665, 676, 749
CviQI	GTAC	2 cut(s)	268, 623
DdeI	CTNAG	1 cut(s)	551
DpnI	GATC	3 cut(s)	95, 312, 674
DpnII	GATC	3 cut(s)	93, 310, 672
EaeI	YGGCCR	1 cut(s)	804
Eam1104I	CTCTTC	2 cut(s)	141, 759
EarI	CTCTTC	2 cut(s)	141, 759
EciI	GGCGGA	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	477, 822
Eco57I	CTGAAG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	4 cut(s)	270, 280, 522, 589
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	477, 822
FaeI	CATG	9 cut(s)	116, 210, 414, 427, 539, 565, 668, 679, 752
FatI	CATG	9 cut(s)	112, 206, 410, 423, 535, 561, 664, 675, 748
FauNDI	CATATG	2 cut(s)	627, 814
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	3 cut(s)	171, 543, 736
FokI	GGATG	4 cut(s)	505, 853, 953, 980
FriOI	GRGCYC	2 cut(s)	477, 822
Fsp4HI	GCNGC	3 cut(s)	171, 543, 736
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	3 cut(s)	171, 543, 736
HaeIII	GGCC	2 cut(s)	490, 806
Hin1II	CATG	9 cut(s)	116, 210, 414, 427, 539, 565, 668, 679, 752
HphI	GGTGA	2 cut(s)	175, 579
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188III	TCNNGA	3 cut(s)	239, 676, 823
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	6 cut(s)	28, 217, 587, 763, 820, 875
HpyCH4IV	ACGT	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 732
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	9 cut(s)	116, 210, 414, 427, 539, 565, 668, 679, 752
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	93, 310, 672
LmnI	GCTCC	3 cut(s)	277, 772, 825
Lsp1109I	GCAGC	3 cut(s)	182, 529, 747
LweI	GCATC	5 cut(s)	370, 527, 529, 831, 931
MabI	ACCWGGT	1 cut(s)	270
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	4 cut(s)	585, 684, 719, 913
MalI	GATC	3 cut(s)	95, 312, 674
MboI	GATC	3 cut(s)	93, 310, 672
MboII	GAAGA	5 cut(s)	158, 770, 773, 776, 871
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	6 cut(s)	158, 477, 650, 657, 777, 822
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	5 cut(s)	195, 354, 384, 894, 899
MluNI	TGGCCA	1 cut(s)	806
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	334, 546, 601, 637, 930
Mox20I	TGGCCA	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	7 cut(s)	15, 353, 357, 707, 897, 902, 963
MslI	CAYNNNNRTG	2 cut(s)	428, 851
Msp20I	TGGCCA	1 cut(s)	806
MspR9I	CCNGG	4 cut(s)	272, 282, 524, 591
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	4 cut(s)	272, 282, 524, 591
MwoI	GCNNNNNNNGC	2 cut(s)	296, 732
NdeI	CATATG	2 cut(s)	627, 814
NdeII	GATC	3 cut(s)	93, 310, 672
NlaIII	CATG	9 cut(s)	116, 210, 414, 427, 539, 565, 668, 679, 752
NlaIV	GGNNCC	5 cut(s)	279, 397, 656, 821, 831
NmuCI	GTSAC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	3 cut(s)	210, 414, 427
PacI	TTAATTAA	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	414
PagI	TCATGA	1 cut(s)	675
PasI	CCCWGGG	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	172, 544, 737
PshBI	ATTAAT	1 cut(s)	902
Psp6I	CCWGG	4 cut(s)	270, 280, 522, 589
PspGI	CCWGG	4 cut(s)	270, 280, 522, 589
PspN4I	GGNNCC	5 cut(s)	279, 397, 656, 821, 831
PspPI	GGNCC	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	269, 624
RsaNI	GTAC	2 cut(s)	268, 623
RseI	CAYNNNNRTG	2 cut(s)	428, 851
SaqAI	TTAA	7 cut(s)	15, 353, 357, 707, 897, 902, 963
SatI	GCNGC	3 cut(s)	171, 543, 736
Sau3AI	GATC	3 cut(s)	93, 310, 672
Sau96I	GGNCC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	272, 282, 524, 591
SduI	GDGCHC	6 cut(s)	158, 477, 650, 657, 777, 822
SexAI	ACCWGGT	1 cut(s)	270
SfaNI	GCATC	5 cut(s)	370, 527, 529, 831, 931
SfcI	CTRYAG	3 cut(s)	214, 543, 595
SmiMI	CAYNNNNRTG	2 cut(s)	428, 851
SmlI	CTYRAG	2 cut(s)	239, 470
SmoI	CTYRAG	2 cut(s)	239, 470
SpeI	ACTAGT	1 cut(s)	43
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	5 cut(s)	195, 354, 384, 894, 899
SsiI	CCGC	1 cut(s)	440
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	4 cut(s)	270, 280, 522, 589
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	263, 322
TasI	AATT	5 cut(s)	195, 354, 384, 894, 899
TatI	WGTACW	1 cut(s)	622
Tru1I	TTAA	7 cut(s)	15, 353, 357, 707, 897, 902, 963
Tru9I	TTAA	7 cut(s)	15, 353, 357, 707, 897, 902, 963
TscAI	CASTG	2 cut(s)	103, 375
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	3 cut(s)	170, 542, 735
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	4 cut(s)	192, 272, 872, 944
TspRI	CASTG	2 cut(s)	103, 375
VspI	ATTAAT	1 cut(s)	902
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	3 cut(s)	210, 414, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.