Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

10358792 .. 10360310

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTTGATCTGCTTGGTCGAGCAGGGCAAGTAAAGAAGGCAATGGATTTAATTAAAAAAATGCCAGTGGAAACAGATGCAATTGTTTGGGGTGCCTTATTAGGTGCATGCAGACAGCACATGAAAATGGACTTGGCGGAAGTTTCAGCAAGGAAACTTACAGAGCCTGATCCCGAAAAAGCAGGGCCATACGTCTTGCTATCAAATATTTATGCATCCCAGGGTAGATGGCATGATGTTGCAGAGCTGAGGGAAAACATGAGAGCCAGAAGCCTTCGCAAGTCACCTGGTTGTAGCTGGATTGAGGTGGAGAAGAATGTACATATGTTTACTGGGGGAGAGAGCACGGGACACCCTGAACATGAGATGATCATGAGAGAGTTAGAGAGACTGGGTGTATTATTAAGTGAAGCTGGTTACTGCCCTGATGGCAGCTTTGTATTGCATGATGTAGAAGAAGAAGAGAAGGTGCACAGCTTGGGTTATCACAGTGAGAAACTGGCCATAGCATATGGGCTCCTGAAGGTGCCACAAGGGATGCCCATTCGTGTGATGAAGAACCTTCAGGTTTGTGGAGATTGCCATTCTGCAATTAAATTAATAGCTAAAGTTACGCAGAGAGAGATAGTTTTGAGGGATGCTAATAGATTTCATCATTTTAAGGATGGCGTGTGTTCTTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

6.6

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	40 - 102	3.5e-21	E motif
DYW_deaminase	PF14432	139 - 231	2.1e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	92, 526
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	2 cut(s)	542, 548
AfaI	GTAC	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	219, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	247, 297, 413, 435, 477, 605
AluI	AGCT	6 cut(s)	247, 297, 413, 435, 477, 605
Alw21I	GWGCWC	2 cut(s)	347, 474
Alw26I	GTCTC	2 cut(s)	382, 678
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	185, 501
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	503
BanI	GGYRCC	2 cut(s)	92, 526
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	347, 474
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	3 cut(s)	222, 422, 659
BciT130I	CCWGG	2 cut(s)	221, 288
BclI	TGATCA	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	382, 678
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	221, 288
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	94, 518, 528
BmrFI	CCNGG	2 cut(s)	221, 288
BmrI	ACTGGG	2 cut(s)	342, 401
BmsI	GCATC	4 cut(s)	67, 224, 528, 628
BmuI	ACTGGG	2 cut(s)	342, 401
Bpu10I	CCTNAGC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	219, 220
Bse1I	ACTGG	4 cut(s)	65, 337, 396, 504
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	221, 288
BseDI	CCNNGG	2 cut(s)	219, 220
BseGI	GGATG	4 cut(s)	215, 543, 643, 670
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	4 cut(s)	65, 337, 396, 504
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	2 cut(s)	187, 503
BshNI	GGYRCC	2 cut(s)	92, 526
BsiHKAI	GWGCWC	2 cut(s)	347, 474
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	382, 678
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	187, 503
Bsp1286I	GDGCHC	3 cut(s)	347, 474, 519
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	7, 169, 369
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	187, 503
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	94, 518, 528
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	92, 526
BsrDI	GCAATG	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	4 cut(s)	65, 337, 396, 504
BssECI	CCNNGG	2 cut(s)	219, 220
BssMI	GATC	3 cut(s)	7, 169, 369
Bst2UI	CCWGG	2 cut(s)	221, 288
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	215, 543, 643, 670
BstKTI	GATC	3 cut(s)	10, 172, 372
BstMAI	GTCTC	2 cut(s)	382, 678
BstMBI	GATC	3 cut(s)	7, 169, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	2 cut(s)	221, 288
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	219, 286
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	187, 503
BtsCI	GGATG	4 cut(s)	215, 543, 643, 670
BtsIMutI	CAGTG	2 cut(s)	72, 496
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	7 cut(s)	108, 121, 233, 259, 362, 373, 446
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	9, 171, 371
DpnII	GATC	3 cut(s)	7, 169, 369
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	519
Eco57I	CTGAAG	2 cut(s)	542, 548
EcoRII	CCWGG	2 cut(s)	219, 286
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	7 cut(s)	111, 124, 236, 262, 365, 376, 449
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	7 cut(s)	107, 120, 232, 258, 361, 372, 445
FauNDI	CATATG	2 cut(s)	324, 511
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	4 cut(s)	202, 550, 650, 677
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	433
HaeIII	GGCC	2 cut(s)	187, 503
Hin1II	CATG	7 cut(s)	111, 124, 236, 262, 365, 376, 449
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	2 cut(s)	330, 472
Hpy188III	TCNNGA	3 cut(s)	173, 373, 520
Hpy8I	GTNNAC	2 cut(s)	330, 472
HpyAV	CCTTC	5 cut(s)	31, 284, 460, 517, 572
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	80, 107, 111, 215, 242, 445, 472, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	111, 124, 236, 262, 365, 376, 449
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	7, 169, 369
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	4 cut(s)	67, 224, 528, 628
MabI	ACCWGGT	1 cut(s)	286
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	282, 416, 610
MalI	GATC	3 cut(s)	9, 171, 371
MboI	GATC	3 cut(s)	7, 169, 369
MboII	GAAGA	5 cut(s)	325, 467, 470, 473, 568
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	3 cut(s)	347, 474, 519
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	4 cut(s)	51, 81, 591, 596
MluNI	TGGCCA	1 cut(s)	503
MnlI	CCTC	3 cut(s)	243, 298, 627
Mox20I	TGGCCA	1 cut(s)	503
Mph1103I	ATGCAT	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	6 cut(s)	50, 54, 404, 594, 599, 660
MslI	CAYNNNNRTG	2 cut(s)	125, 548
Msp20I	TGGCCA	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	221, 288
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	221, 288
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeI	CATATG	2 cut(s)	324, 511
NdeII	GATC	3 cut(s)	7, 169, 369
NlaIII	CATG	7 cut(s)	111, 124, 236, 262, 365, 376, 449
NlaIV	GGNNCC	3 cut(s)	94, 518, 528
NmuCI	GTSAC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	111
PacI	TTAATTAA	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	372
PasI	CCCWGGG	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	434
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	219, 286
PspGI	CCWGG	2 cut(s)	219, 286
PspN4I	GGNNCC	3 cut(s)	94, 518, 528
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	125, 548
SaqAI	TTAA	6 cut(s)	50, 54, 404, 594, 599, 660
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	3 cut(s)	7, 169, 369
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	221, 288
SduI	GDGCHC	3 cut(s)	347, 474, 519
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	4 cut(s)	67, 224, 528, 628
SmiMI	CAYNNNNRTG	2 cut(s)	125, 548
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	4 cut(s)	51, 81, 591, 596
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	219, 286
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	51, 81, 591, 596
TatI	WGTACW	1 cut(s)	319
Tru1I	TTAA	6 cut(s)	50, 54, 404, 594, 599, 660
Tru9I	TTAA	6 cut(s)	50, 54, 404, 594, 599, 660
TscAI	CASTG	2 cut(s)	72, 496
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	137, 569, 641
TspRI	CASTG	2 cut(s)	72, 496
VneI	GTGCAC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	599
XceI	RCATGY	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.