Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

9062938 .. 9065228

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1079300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCCTTGTATAAGGCTTTACAACATTCCTTCTTAGCCTTCTATGTGCATAAGCAACAAGTGGATATTGCTAGAAAGCTTTTTGAAGTGATGCCAAAGAAAAATGAGTTGTCTTGGACAACAATGCTGATAGATTACACTCAGTGTGGACAGATCATAAAGGCTTCAGAGCTTTTTCAAGCAATGCCTATTAAGTCAGTTGTTACTTGTAATGCCATGATACGTGGTTACGGTCAAAATGGAGAGGTAGCTAAAGTAAGGGAAGTTTTTGATAATATGAGAGATAGGGATGATCGGACATGGAGTGCAATGATTAAAGTTTACAAACTAAAAGGTTTTGATTTGGAAGCCCTTGACTTGTTTGCTTTGATGCAAAGAGAAGATATAAGGCCGAATTTCCCTTTAAGTGTTCTATCTGTTTGTGGCAGCTTGGTGAATCTTGATTATGGTAGACAGATTCATGCCCAGTTGGTGAGGAACCAGTTTGATCTTGATGTATATGTTGCTTCAGTATTGATGACAATGTTTGTTAAATGTGGCGACCTTGTGAAGGCAAAACAGGTGTTTGACAGGTTTTCTGCAAAGGATATTGTTATGTGGAACTCAATGATCACTAGTTATGCCCAACATGGTTTAGGAGGTAAAGCTCTACAACTGTTTGATGAGATGTGCTCTTTGAGCATAGCAGCAGATGAAATCACCTTTGTTGGAGTTCTTTTAGCCTGTAGCTACAGTGGAAATGTAGAAAAAGGTCTTGAGATTTTTGAAACAATGAAATCAAATTACCAGGTGGAGCCAGGAACTGCACATTTTGCATGTATGGTTGATCTGCTTGGTCGAGTAGGACAAGTAAATGAGGTAATGGGTTTAATTAATAGGATGCCAGTAGAGGCAAATGCGATTGTTTGGGGTGCCGTATTAGGTGCATGTAGACAGCATATGAAAATGGACTTGGCGGAAGTTGCAGCAAAGAAACTTACAGAGCTTGAGCCCTATAAAGCAAGGCCTTACGTCTTGCTATCTGTTAATGCACAAAACCGAAGGGGTCTTGGAACAATGAACAAGTACATGTGGTCTTGTGGTCTGGGAAGTCATCTACGCCGAGCACGGCATCGACGCCACCCGACGATACTAGGGCGACAACGAGCTCCAGCTGAAGACTCGTCAGATCATGGTCCTACGGCCAGATTTTTCGATGGGGTAAATCAGGAGAGCCTCACTAAGTCGAGCGGTGCGAATGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

416

Amino Acids

46.62

Weight (kDa)

8.83

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 106	9.3e-07	PPR repeat family
PPR	PF01535	68 - 96	1.4e-06	PPR repeat
PPR_2	PF13041	195 - 240	3.6e-09	PPR repeat family
PPR	PF01535	198 - 226	3.9e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	911
AccBSI	CCGCTC	1 cut(s)	1230
AccI	GTMKAC	2 cut(s)	451, 931
AciI	CCGC	2 cut(s)	956, 1230
AcoI	YGGCCR	1 cut(s)	1182
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	3 cut(s)	150, 492, 1176
AcyI	GRCGYC	1 cut(s)	1117
AdeI	CACNNNGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	1067
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	1068
AgsI	TTSAA	3 cut(s)	86, 179, 767
AhlI	ACTAGT	1 cut(s)	614
AjnI	CCWGG	2 cut(s)	786, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	935, 967
AluBI	AGCT	9 cut(s)	79, 172, 251, 429, 647, 729, 985, 1148, 1154
AluI	AGCT	9 cut(s)	79, 172, 251, 429, 647, 729, 985, 1148, 1154
Alw21I	GWGCWC	3 cut(s)	674, 1108, 1150
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	3 cut(s)	389, 1004, 1182
ApeKI	GCWGC	3 cut(s)	426, 686, 965
ApoI	RAATTY	1 cut(s)	394
AseI	ATTAAT	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	1175
AsuHPI	GGTGA	3 cut(s)	445, 484, 691
AvaII	GGWCC	1 cut(s)	1175
BanI	GGYRCC	1 cut(s)	911
BanII	GRGCYC	2 cut(s)	993, 1150
BbsI	GAAGAC	1 cut(s)	1164
Bbv12I	GWGCWC	3 cut(s)	674, 1108, 1150
BbvI	GCAGC	3 cut(s)	438, 698, 977
BccI	CCATC	1 cut(s)	1190
BceAI	ACGGC	3 cut(s)	899, 1124, 1197
BciT130I	CCWGG	2 cut(s)	788, 798
BclI	TGATCA	1 cut(s)	609
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	3 cut(s)	72, 615, 1133
BfmI	CTRYAG	2 cut(s)	724, 730
BisI	GCNGC	3 cut(s)	427, 687, 966
BlsI	GCNGC	3 cut(s)	428, 688, 967
Bme1390I	CCNGG	2 cut(s)	788, 798
Bme18I	GGWCC	1 cut(s)	1175
BmgT120I	GGNCC	1 cut(s)	1175
BmiI	GGNNCC	3 cut(s)	479, 795, 913
BmrFI	CCNGG	2 cut(s)	788, 798
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	4 cut(s)	81, 360, 870, 1120
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	1164
BplI	GAGNNNNNCTC	2 cut(s)	656, 688
BpmI	CTGGAG	1 cut(s)	1134
BpuEI	CTTGAG	2 cut(s)	776, 1007
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	1117
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	3 cut(s)	466, 481, 884
Bse3DI	GCAATG	2 cut(s)	189, 315
BseBI	CCWGG	2 cut(s)	788, 798
BseGI	GGATG	2 cut(s)	295, 885
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	2 cut(s)	189, 315
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	3 cut(s)	466, 481, 884
BseXI	GCAGC	3 cut(s)	438, 698, 977
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	3 cut(s)	391, 1006, 1184
BshNI	GGYRCC	1 cut(s)	911
BsiHKAI	GWGCWC	3 cut(s)	674, 1108, 1150
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	1243
BsnI	GGCC	3 cut(s)	391, 1006, 1184
Bsp1286I	GDGCHC	4 cut(s)	674, 993, 1108, 1150
Bsp143I	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
BspACI	CCGC	2 cut(s)	956, 1230
BspANI	GGCC	3 cut(s)	391, 1006, 1184
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	479, 795, 913
BspT107I	GGYRCC	1 cut(s)	911
BsrBI	CCGCTC	1 cut(s)	1230
BsrDI	GCAATG	2 cut(s)	189, 315
BsrI	ACTGG	3 cut(s)	466, 481, 884
BssMI	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
BssNI	GRCGYC	1 cut(s)	1117
Bst2UI	CCWGG	2 cut(s)	788, 798
Bst4CI	ACNGT	3 cut(s)	233, 657, 734
BstACI	GRCGYC	1 cut(s)	1117
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	34, 141, 1221
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	295, 885
BstKTI	GATC	6 cut(s)	156, 295, 490, 612, 829, 1171
BstMBI	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	678, 812, 962
BstNI	CCWGG	2 cut(s)	788, 798
BstNSI	RCATGY	3 cut(s)	819, 930, 1072
BstSCI	CCNGG	2 cut(s)	786, 796
BstSFI	CTRYAG	2 cut(s)	724, 730
BstV1I	GCAGC	3 cut(s)	438, 698, 977
BstV2I	GAAGAC	1 cut(s)	1164
BsuRI	GGCC	3 cut(s)	391, 1006, 1184
BtsCI	GGATG	2 cut(s)	295, 885
BtsI	GCAGTG	1 cut(s)	1248
BtsIMutI	CAGTG	3 cut(s)	149, 739, 1248
CaiI	CAGNNNCTG	1 cut(s)	803
Cfr13I	GGNCC	1 cut(s)	1175
CseI	GACGC	1 cut(s)	1125
CsiI	ACCWGGT	1 cut(s)	786
Csp6I	GTAC	1 cut(s)	1066
CviAII	CATG	8 cut(s)	217, 300, 461, 629, 816, 927, 1069, 1172
CviQI	GTAC	1 cut(s)	1066
DdeI	CTNAG	3 cut(s)	34, 141, 1221
DpnI	GATC	6 cut(s)	155, 294, 489, 611, 828, 1170
DpnII	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
DraIII	CACNNNGTG	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	1182
EciI	GGCGGA	1 cut(s)	971
Ecl136II	GAGCTC	1 cut(s)	1148
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	2 cut(s)	993, 1150
Eco47I	GGWCC	1 cut(s)	1175
Eco53kI	GAGCTC	1 cut(s)	1148
Eco57I	CTGAAG	3 cut(s)	150, 492, 1176
EcoICRI	GAGCTC	1 cut(s)	1148
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	786, 796
EcoT38I	GRGCYC	2 cut(s)	993, 1150
FaeI	CATG	8 cut(s)	220, 303, 464, 632, 819, 930, 1072, 1175
FatI	CATG	8 cut(s)	216, 299, 460, 628, 815, 926, 1068, 1171
FauNDI	CATATG	1 cut(s)	939
FbaI	TGATCA	1 cut(s)	609
FblI	GTMKAC	2 cut(s)	451, 931
Fnu4HI	GCNGC	3 cut(s)	427, 687, 966
FokI	GGATG	2 cut(s)	302, 892
FriOI	GRGCYC	2 cut(s)	993, 1150
Fsp4HI	GCNGC	3 cut(s)	427, 687, 966
FspBI	CTAG	3 cut(s)	72, 615, 1133
GluI	GCNGC	3 cut(s)	427, 687, 966
GsuI	CTGGAG	1 cut(s)	1134
HaeIII	GGCC	3 cut(s)	391, 1006, 1184
HgaI	GACGC	1 cut(s)	1125
Hin1I	GRCGYC	1 cut(s)	1117
Hin1II	CATG	8 cut(s)	220, 303, 464, 632, 819, 930, 1072, 1175
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	436, 457, 1160
HphI	GGTGA	3 cut(s)	445, 484, 691
Hpy166II	GTNNAC	4 cut(s)	149, 322, 452, 932
Hpy188I	TCNGA	3 cut(s)	169, 297, 1168
Hpy188III	TCNNGA	4 cut(s)	440, 491, 755, 1208
Hpy8I	GTNNAC	4 cut(s)	149, 322, 452, 932
Hpy99I	CGWCG	2 cut(s)	1119, 1129
HpyAV	CCTTC	4 cut(s)	40, 49, 544, 1035
HpyCH4III	ACNGT	3 cut(s)	233, 657, 734
HpyCH4IV	ACGT	2 cut(s)	223, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	678, 812, 962
HpyF3I	CTNAG	3 cut(s)	34, 141, 1221
HpySE526I	ACGT	2 cut(s)	223, 1011
Hsp92I	GRCGYC	1 cut(s)	1117
Hsp92II	CATG	8 cut(s)	220, 303, 464, 632, 819, 930, 1072, 1175
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
LmnI	GCTCC	2 cut(s)	793, 1153
Lsp1109I	GCAGC	3 cut(s)	438, 698, 977
LweI	GCATC	4 cut(s)	81, 360, 870, 1120
MabI	ACCWGGT	1 cut(s)	786
MaeI	CTAG	3 cut(s)	72, 615, 1133
MaeII	ACGT	2 cut(s)	223, 1011
MaeIII	GTNAC	2 cut(s)	202, 227
MalI	GATC	6 cut(s)	155, 294, 489, 611, 828, 1170
MbiI	CCGCTC	1 cut(s)	1230
MboI	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
MboII	GAAGA	2 cut(s)	392, 1169
MhlI	GDGCHC	4 cut(s)	674, 993, 1108, 1150
MluCI	AATT	3 cut(s)	394, 781, 870
MlyI	GAGTC	1 cut(s)	1154
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	6 cut(s)	238, 468, 632, 850, 883, 1226
MseI	TTAA	7 cut(s)	192, 315, 404, 531, 869, 873, 1026
MspA1I	CMGCKG	1 cut(s)	1154
MspR9I	CCNGG	2 cut(s)	788, 798
Mva1269I	GAATGC	1 cut(s)	1243
MvaI	CCWGG	2 cut(s)	788, 798
MwoI	GCNNNNNNNGC	3 cut(s)	678, 812, 962
NdeI	CATATG	1 cut(s)	939
NdeII	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
NlaIII	CATG	8 cut(s)	220, 303, 464, 632, 819, 930, 1072, 1175
NlaIV	GGNNCC	3 cut(s)	479, 795, 913
NmeAIII	GCCGAG	1 cut(s)	1127
NspI	RCATGY	3 cut(s)	819, 930, 1072
PacI	TTAATTAA	1 cut(s)	873
PceI	AGGCCT	1 cut(s)	1006
PciI	ACATGT	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	1232
PctI	GAATGC	1 cut(s)	1243
PfeI	GAWTC	2 cut(s)	436, 457
PkrI	GCNGC	3 cut(s)	428, 688, 967
PleI	GAGTC	1 cut(s)	1154
PpsI	GAGTC	1 cut(s)	1154
Ppu21I	YACGTR	1 cut(s)	224
PscI	ACATGT	1 cut(s)	1068
PshBI	ATTAAT	1 cut(s)	873
Psp124BI	GAGCTC	1 cut(s)	1150
Psp6I	CCWGG	2 cut(s)	786, 796
PspGI	CCWGG	2 cut(s)	786, 796
PspN4I	GGNNCC	3 cut(s)	479, 795, 913
PspPI	GGNCC	1 cut(s)	1175
PstNI	CAGNNNCTG	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	1 cut(s)	1067
RsaNI	GTAC	1 cut(s)	1066
SacI	GAGCTC	1 cut(s)	1150
SaqAI	TTAA	7 cut(s)	192, 315, 404, 531, 869, 873, 1026
SatI	GCNGC	3 cut(s)	427, 687, 966
Sau3AI	GATC	6 cut(s)	153, 292, 487, 609, 826, 1168
Sau96I	GGNCC	1 cut(s)	1175
SchI	GAGTC	1 cut(s)	1154
ScrFI	CCNGG	2 cut(s)	788, 798
SduI	GDGCHC	4 cut(s)	674, 993, 1108, 1150
SexAI	ACCWGGT	1 cut(s)	786
SfaNI	GCATC	4 cut(s)	81, 360, 870, 1120
SfcI	CTRYAG	2 cut(s)	724, 730
SinI	GGWCC	1 cut(s)	1175
SmlI	CTYRAG	2 cut(s)	755, 986
SmoI	CTYRAG	2 cut(s)	755, 986
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	3 cut(s)	394, 781, 870
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	2 cut(s)	956, 1230
SspMI	CTAG	3 cut(s)	72, 615, 1133
SstI	GAGCTC	1 cut(s)	1150
StuI	AGGCCT	1 cut(s)	1006
StyD4I	CCNGG	2 cut(s)	786, 796
TaaI	ACNGT	3 cut(s)	233, 657, 734
TaiI	ACGT	2 cut(s)	226, 1014
TaqI	TCGA	4 cut(s)	838, 1114, 1194, 1226
TasI	AATT	3 cut(s)	394, 781, 870
TatI	WGTACW	1 cut(s)	1065
TfiI	GAWTC	2 cut(s)	436, 457
Tru1I	TTAA	7 cut(s)	192, 315, 404, 531, 869, 873, 1026
Tru9I	TTAA	7 cut(s)	192, 315, 404, 531, 869, 873, 1026
TscAI	CASTG	3 cut(s)	149, 739, 1248
TseI	GCWGC	3 cut(s)	426, 686, 965
TspDTI	ATGAA	5 cut(s)	449, 708, 788, 956, 1073
TspRI	CASTG	3 cut(s)	149, 739, 1248
VpaK11BI	GGWCC	1 cut(s)	1175
VspI	ATTAAT	1 cut(s)	873
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	3 cut(s)	819, 930, 1072
XmiI	GTMKAC	2 cut(s)	451, 931
XspI	CTAG	3 cut(s)	72, 615, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.