Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011709

Physical Location & Seq

Genomic Coordinates Forward (+)

3163314 .. 3164509

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1048200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTGAACTCCAATAGCAGATCATCATCTGCAGAAAAGAAAGTTGATCAATCTGTTGGATATCAGGAGGTTCACAGTCGGGATTTAAGAAAGGAGAGTGAACTTGATAATGACAAGGCTGAATTGGGAGAGGTGATGGAAGAAAATGCTAGGTTAAAAATGACGTTAAATCATATGGAGAAGGATTACCATTCTCTCCAGCTGCGGTTTTTCGACATCCTCAAGCAACAGGCTTCCAAAAAAGCTGTAAATGTCTCGGGTCACCGAATAATTGAAGAACCGGAGGAGCTCTTGTCTCTTTGTCTTGGAAGAAGTCCAAGGGAGCCTAAAAGTGATCGTGAAACTACTGCCAGCAGCAACTTCCCAAAACTTGCACAAGTTGATGATGGTGAAGAGAACTTGAAGGCCAATCTTACTCCTGAATTAGGTTCTGATGAGACTAGTTTGGAAGAACCTAATAAGAATCATGCAGAAATTTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

162

Amino Acids

18.25

Weight (kDa)

5.13

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15130 AT5G15130
fragaria_vesca	FvH4_6g49140 FvH4_6g49140
malus_domestica	MD09G1048200.v1.1 MD09G1048300.v1.1 MD17G1048400.v1.1
prunus_persica	Prupe.3G270800_v2.0.a1
pyrus_communis	pycom111g03910
rosa_chinensis	RchiOBHm_Chr2g0169011
rosa_laevigata	RLG00000021823
rosa_multiflora	Rmu_ssc0000393.1_g000021
rosa_roxburghii	Rroxscaffold_2G00082540
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607700 Rh2BG620200 Rh2CG589200 Rh2DG631000
rosa_wichuraiana	Rw2G050390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	275, 403, 480
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	3 cut(s)	202, 245, 289
AluI	AGCT	3 cut(s)	202, 245, 289
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	3 cut(s)	259, 300, 431
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	202, 354
ApoI	RAATTY	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	145, 254, 401
AvaI	CYCGRG	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	189, 366
BccI	CCATC	2 cut(s)	130, 380
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	259, 300, 431
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	150, 441
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	203, 355
BlsI	GCNGC	2 cut(s)	204, 356
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	189, 366
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	3 cut(s)	259, 300, 431
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	20, 46, 334
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	20, 46, 334
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	352
BstEII	GGTNACC	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	23, 49, 337
BstMAI	GTCTC	3 cut(s)	259, 300, 431
BstMBI	GATC	3 cut(s)	20, 46, 334
BstPI	GGTNACC	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	189, 366
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	352
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	7 cut(s)	119, 202, 233, 245, 289, 325, 407
CviKI_1	RGCY	7 cut(s)	119, 202, 233, 245, 289, 325, 407
DpnI	GATC	3 cut(s)	22, 48, 336
DpnII	GATC	3 cut(s)	20, 46, 334
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO65I	GGTNACC	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	470
FaiI	YATR	3 cut(s)	174, 176, 468
FatI	CATG	1 cut(s)	466
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	203, 355
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	203, 355
FspBI	CTAG	2 cut(s)	150, 441
GluI	GCNGC	2 cut(s)	203, 355
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	1 cut(s)	470
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	145, 254, 401
Hpy166II	GTNNAC	2 cut(s)	73, 101
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	4 cut(s)	65, 80, 338, 419
Hpy8I	GTNNAC	2 cut(s)	73, 101
HpyAV	CCTTC	2 cut(s)	175, 397
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	32, 374, 470
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	20, 46, 334
LmnI	GCTCC	2 cut(s)	286, 322
LpnPI	CCDG	6 cut(s)	50, 212, 215, 294, 364, 432
Lsp1109I	GCAGC	2 cut(s)	189, 366
MaeI	CTAG	2 cut(s)	150, 441
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	22, 48, 336
MboI	GATC	3 cut(s)	20, 46, 334
MboII	GAAGA	5 cut(s)	152, 287, 321, 404, 461
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	122, 270, 422, 474
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	61, 124, 230, 277
MseI	TTAA	3 cut(s)	86, 155, 167
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	3 cut(s)	20, 46, 334
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	204, 356
Psp124BI	GAGCTC	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	86, 155, 167
SatI	GCNGC	2 cut(s)	203, 355
Sau3AI	GATC	3 cut(s)	20, 46, 334
SduI	GDGCHC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	4 cut(s)	122, 270, 422, 474
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	2 cut(s)	150, 441
SstI	GAGCTC	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	213
TasI	AATT	4 cut(s)	122, 270, 422, 474
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	3 cut(s)	86, 155, 167
Tru9I	TTAA	3 cut(s)	86, 155, 167
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	202, 354
Tsp45I	GTSAC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	474
XspI	CTAG	2 cut(s)	150, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.