MD09G1048300.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
3166930 .. 3174316
7387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1048300.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGCTGAACTCCAATAGCAGATCATCATCTGCAGAAAAGAAAGTTGATCAATCTGTTGGATATCAAGAGGTTCACAGCCGGGATTTAAGAAAGGAGAGTGAACTTGATAATGCCAAAGCTGAATTGGGAGAGGTGATGGAAGAAAATGCTAGGTTAAAAATAACGTTAAATCATATGAAGAAGGATTACCATTCTCTCCAGCTGCGGTTTTTCGAAATCCTCAAGCAACAGGCTTCCAAAAAAGCTGTAAATGTCGCGGGTCATCGAATAATCGAAGAACCGGAGGAGCTCTTGTCTCTTTGTCTTGGAAGAAGTCCAAGGGAGCCTAAAAGTGATCGTGAAACTACTGCCAGTAGCAACTTCACAAAACTTGCACAAGTTGATGATGGTGAAGAGAACTTGATGGCCAATGTTACTCTTGGATTAGGTTCTGATGAGACTAGTTTGGAAGAACCTAATAAGAATCATGCAGAAGCTGGAGGTGGAGAAGCATCGTCGCCACCATCGAGTAAAACGCGGAAGACGATGAGGAATGAAGACGGTGAACCTCCACCGCAGGTCAATGCAAAACGAGCTAGGGTTTCTGTGAGAACTAGATGTGATGCCCCAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGACTGCAAAAGGAAATCCATGCCCGCGAGCATACTATCGCTGCACAGTTGCACCAGCGTGCCCTGTGAGAAAGCAGGTGCAAAGATGTTATGAGGATATGTCCATCTTAATCACCACCTATGAAGGAACTCACAACCACCCACTTCCATTCACAGCCACTTCCATGGCTTCCACCACCTCTGCCGCAGCTTCCATGCTGTTGTCCGGCTCTTCCACATCTCACCCGGGTTTCGGTTCCACAGCCACCCTAATCAATGGATCAGAATTTGGTGCCTTCGATAACTCAAGAACACAACTCTACATGCCCAAATCTTCACACCCTTTGCTCCCCACAATCACTCTCGACCTCACTGCCTCTACATCCTCTTCTAGTACGTTTCCTTCAAGTCTAAGCTTTTGCTCCCCGTCAGATTCCAACAGTTTGCCCATAAGTTGGGGCAATGGATACCTTAAATATGGCTTGCCACTGTCCGACAAAACTCAAGTTGGATCCTACAATCTTGGAAAAGCATCCCAAGAGTATTTCCATCAAACTTACGCAGAAAAGATCCATCAAGCTTCTTCCCAGGTGTCTTTGACAGAATCACTAACCAATGCAATCACGTCTGACCCGAATTTCAAGTCGGTAATTGCAGTAGCACTTTCATCTATGGTCGGAGGTGGTGGTGGCGCCACCCATAGGAACCAAGGCGAAGGCTGCGAAAGAATGGGAAAACAGTTGAAGTGGGATGAAGCTACTCATCAGTTTACTTCTCAAAAGTGA

Protein Analysis

471

Amino Acids

51.18

Weight (kDa)

7.61

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 206 - 264 4.9e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 2 cut(s) 547, 715
AccB1I GGYRCC 2 cut(s) 920, 1319
AccB7I CCANNNNNTGG 1 cut(s) 1083
AccII CGCG 3 cut(s) 257, 517, 676
AciI CCGC 6 cut(s) 205, 257, 517, 554, 674, 834
AclI AACGTT 1 cut(s) 164
AclWI GGATC 4 cut(s) 916, 1134, 1147, 1192
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 2 cut(s) 914, 1264
AcyI GRCGYC 1 cut(s) 1320
AfaI GTAC 1 cut(s) 1024
AfiI CCNNNNNNNGG 3 cut(s) 881, 1083, 1329
AgsI TTSAA 3 cut(s) 1035, 1270, 1372
AhlI ACTAGT 1 cut(s) 440
AjiI CACGTC 1 cut(s) 1254
AjnI CCWGG 1 cut(s) 1215
AleI CACNNNNGTG 1 cut(s) 706
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 300, 431
AlwI GGATC 4 cut(s) 916, 1134, 1147, 1192
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 874
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 202, 690, 836, 1347
ApoI RAATTY 2 cut(s) 914, 1264
ArsI GACNNNNNNTTYG 2 cut(s) 1256, 1288
AspLEI GCGC 1 cut(s) 1322
AsuC2I CCSGG 3 cut(s) 80, 875, 876
AsuHPI GGTGA 5 cut(s) 145, 401, 554, 754, 863
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 874
BaeGI GKGCMC 1 cut(s) 713
BalI TGGCCA 1 cut(s) 407
BamHI GGATCC 1 cut(s) 1139
BanI GGYRCC 2 cut(s) 920, 1319
BanII GRGCYC 1 cut(s) 291
BarI GAAGNNNNNNTAC 4 cut(s) 170, 202, 1015, 1047
BbsI GAAGAC 3 cut(s) 527, 543, 656
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 189, 677, 848, 1334
BccI CCATC 8 cut(s) 130, 380, 397, 511, 614, 761, 1185, 1209
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 1 cut(s) 1217
BciVI GTATCC 1 cut(s) 1088
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 3 cut(s) 80, 875, 876
BcoDI GTCTC 2 cut(s) 300, 431
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 5 cut(s) 150, 441, 576, 594, 1020
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 1323
BfuAI ACCTGC 2 cut(s) 547, 715
BfuI GTATCC 1 cut(s) 1088
BisI GCNGC 5 cut(s) 203, 691, 834, 837, 1348
BlsI GCNGC 5 cut(s) 204, 692, 835, 838, 1349
Bme1390I CCNGG 4 cut(s) 80, 875, 876, 1217
BmeT110I CYCGRG 1 cut(s) 874
BmgBI CACGTC 1 cut(s) 1254
BmiI GGNNCC 6 cut(s) 324, 886, 922, 1141, 1321, 1334
BmrFI CCNGG 4 cut(s) 80, 875, 876, 1217
BmsI GCATC 4 cut(s) 500, 592, 614, 1169
BpiI GAAGAC 3 cut(s) 527, 543, 656
BpmI CTGGAG 2 cut(s) 182, 498
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 3 cut(s) 206, 919, 1116
BpuMI CCSGG 3 cut(s) 80, 875, 876
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 1320
BsaJI CCNNGG 5 cut(s) 317, 813, 874, 1215, 1336
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 3 cut(s) 881, 1083, 1329
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 1096
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 1217
BseDI CCNNGG 5 cut(s) 317, 813, 874, 1215, 1336
BseGI GGATG 4 cut(s) 629, 1010, 1160, 1384
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 881, 1083, 1329
BseMI GCAATG 1 cut(s) 1096
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 4 cut(s) 189, 677, 848, 1334
BsgI GTGCAG 1 cut(s) 676
Bsh1236I CGCG 3 cut(s) 257, 517, 676
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 2 cut(s) 920, 1319
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 874
BsiSI CCGG 4 cut(s) 79, 281, 855, 875
BslI CCNNNNNNNGG 3 cut(s) 881, 1083, 1329
BsmAI GTCTC 2 cut(s) 300, 431
BsnI GGCC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 874
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 291, 713
Bsp143I GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 6 cut(s) 205, 257, 517, 554, 674, 834
BspANI GGCC 1 cut(s) 407
BspFNI CGCG 3 cut(s) 257, 517, 676
BspLI GGNNCC 6 cut(s) 324, 886, 922, 1141, 1321, 1334
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 2 cut(s) 547, 715
BspPI GGATC 4 cut(s) 916, 1134, 1147, 1192
BspQI GCTCTTC 1 cut(s) 865
BspT104I TTCGAA 1 cut(s) 213
BspT107I GGYRCC 2 cut(s) 920, 1319
BsrDI GCAATG 1 cut(s) 1096
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 5 cut(s) 317, 813, 874, 1215, 1336
BssMI GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
BssNI GRCGYC 1 cut(s) 1320
BssT1I CCWWGG 3 cut(s) 317, 813, 1336
Bst2UI CCWGG 1 cut(s) 1217
Bst4CI ACNGT 5 cut(s) 542, 697, 1070, 1119, 1368
Bst6I CTCTTC 3 cut(s) 387, 865, 1021
BstACI GRCGYC 1 cut(s) 1320
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 674, 678, 709, 1112
BstDEI CTNAG 1 cut(s) 1040
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 4 cut(s) 629, 1010, 1160, 1384
BstFNI CGCG 3 cut(s) 257, 517, 676
BstH2I RGCGCY 1 cut(s) 1323
BstHHI GCGC 1 cut(s) 1322
BstKTI GATC 6 cut(s) 23, 49, 337, 911, 1142, 1200
BstMAI GTCTC 2 cut(s) 300, 431
BstMBI GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 572, 1347
BstNI CCWGG 1 cut(s) 1217
BstNSI RCATGY 1 cut(s) 955
BstSCI CCNGG 4 cut(s) 78, 873, 874, 1215
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 713
BstUI CGCG 3 cut(s) 257, 517, 676
BstV1I GCAGC 4 cut(s) 189, 677, 848, 1334
BstV2I GAAGAC 3 cut(s) 527, 543, 656
BstX2I RGATCY 2 cut(s) 1139, 1197
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 2 cut(s) 1139, 1197
BsuI GTATCC 1 cut(s) 1088
BsuRI GGCC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 813
BtrI CACGTC 1 cut(s) 1254
BtsCI GGATG 4 cut(s) 629, 1010, 1160, 1384
BtsI GCAGTG 1 cut(s) 999
BtsIMutI CAGTG 2 cut(s) 999, 1115
BveI ACCTGC 2 cut(s) 547, 715
Cac8I GCNNGC 4 cut(s) 674, 678, 709, 1112
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 1322
Cfr9I CCCGGG 1 cut(s) 874
Csp6I GTAC 1 cut(s) 1023
CviAII CATG 5 cut(s) 467, 669, 814, 844, 952
CviQI GTAC 1 cut(s) 1023
DdeI CTNAG 1 cut(s) 1040
DinI GGCGCC 1 cut(s) 1321
DpnI GATC 6 cut(s) 22, 48, 336, 910, 1141, 1199
DpnII GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 3 cut(s) 387, 865, 1021
EarI CTCTTC 3 cut(s) 387, 865, 1021
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 3 cut(s) 317, 813, 1336
Eco24I GRGCYC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 874
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 1215
EcoRV GATATC 1 cut(s) 62
EcoT14I CCWWGG 3 cut(s) 317, 813, 1336
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 1321
EheI GGCGCC 1 cut(s) 1321
ErhI CCWWGG 3 cut(s) 317, 813, 1336
FaeI CATG 5 cut(s) 470, 672, 817, 847, 955
FatI CATG 5 cut(s) 466, 668, 813, 843, 951
FauI CCCGC 2 cut(s) 250, 681
FauNDI CATATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 203, 691, 834, 837, 1348
FokI GGATG 4 cut(s) 636, 997, 1147, 1391
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 5 cut(s) 203, 691, 834, 837, 1348
FspBI CTAG 5 cut(s) 150, 441, 576, 594, 1020
GlaI GCGC 1 cut(s) 1321
GluI GCNGC 5 cut(s) 203, 691, 834, 837, 1348
GsuI CTGGAG 2 cut(s) 182, 498
HaeII RGCGCY 1 cut(s) 1323
HaeIII GGCC 1 cut(s) 407
HapII CCGG 4 cut(s) 79, 281, 855, 875
HhaI GCGC 1 cut(s) 1322
Hin1I GRCGYC 1 cut(s) 1320
Hin1II CATG 5 cut(s) 470, 672, 817, 847, 955
Hin6I GCGC 1 cut(s) 1320
HinP1I GCGC 1 cut(s) 1320
HindIII AAGCTT 2 cut(s) 1042, 1206
HinfI GANTC 3 cut(s) 463, 1061, 1232
HpaII CCGG 4 cut(s) 79, 281, 855, 875
HphI GGTGA 5 cut(s) 145, 401, 554, 754, 863
Hpy166II GTNNAC 4 cut(s) 73, 101, 545, 1398
Hpy188I TCNGA 6 cut(s) 433, 913, 1060, 1123, 1258, 1307
Hpy188III TCNNGA 4 cut(s) 65, 338, 936, 992
Hpy8I GTNNAC 4 cut(s) 73, 101, 545, 1398
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 5 cut(s) 175, 767, 934, 1041, 1337
HpyCH4III ACNGT 5 cut(s) 542, 697, 1070, 1119, 1368
HpyCH4IV ACGT 3 cut(s) 164, 1025, 1253
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 1347
HpyF3I CTNAG 1 cut(s) 1040
HpySE526I ACGT 3 cut(s) 164, 1025, 1253
Hsp92I GRCGYC 1 cut(s) 1320
Hsp92II CATG 5 cut(s) 470, 672, 817, 847, 955
HspAI GCGC 1 cut(s) 1320
KasI GGCGCC 1 cut(s) 1319
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
LguI GCTCTTC 1 cut(s) 865
LmnI GCTCC 4 cut(s) 286, 322, 981, 1055
Lsp1109I GCAGC 4 cut(s) 189, 677, 848, 1334
LweI GCATC 4 cut(s) 500, 592, 614, 1169
MaeI CTAG 5 cut(s) 150, 441, 576, 594, 1020
MaeII ACGT 3 cut(s) 164, 1025, 1253
MaeIII GTNAC 1 cut(s) 412
MalI GATC 6 cut(s) 22, 48, 336, 910, 1141, 1199
MboI GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
MflI RGATCY 2 cut(s) 1139, 1197
MhlI GDGCHC 2 cut(s) 291, 713
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 4 cut(s) 122, 914, 1264, 1278
MluNI TGGCCA 1 cut(s) 407
Mly113I GGCGCC 1 cut(s) 1320
MmeI TCCRAC 5 cut(s) 37, 1089, 1117, 1146, 1285
Mox20I TGGCCA 1 cut(s) 407
MscI TGGCCA 1 cut(s) 407
MseI TTAA 5 cut(s) 86, 155, 167, 758, 1101
MslI CAYNNNNRTG 2 cut(s) 706, 812
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 4 cut(s) 79, 281, 855, 875
MspR9I CCNGG 4 cut(s) 80, 875, 876, 1217
MvaI CCWGG 1 cut(s) 1217
MvnI CGCG 3 cut(s) 257, 517, 676
MwoI GCNNNNNNNGC 2 cut(s) 572, 1347
NarI GGCGCC 1 cut(s) 1320
NciI CCSGG 3 cut(s) 80, 875, 876
NcoI CCATGG 1 cut(s) 813
NdeI CATATG 1 cut(s) 174
NdeII GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
NlaIII CATG 5 cut(s) 470, 672, 817, 847, 955
NlaIV GGNNCC 6 cut(s) 324, 886, 922, 1141, 1321, 1334
NspI RCATGY 1 cut(s) 955
NspV TTCGAA 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 865
PcsI WCGNNNNNNNCGW 3 cut(s) 503, 521, 1259
PfeI GAWTC 3 cut(s) 463, 1061, 1232
PflMI CCANNNNNTGG 1 cut(s) 1083
PkrI GCNGC 5 cut(s) 204, 692, 835, 838, 1349
PluTI GGCGCC 1 cut(s) 1323
Psp124BI GAGCTC 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 1215
PspGI CCWGG 1 cut(s) 1215
PspN4I GGNNCC 6 cut(s) 324, 886, 922, 1141, 1321, 1334
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 1139, 1197
PvuII CAGCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 1024
RsaNI GTAC 1 cut(s) 1023
RseI CAYNNNNRTG 2 cut(s) 706, 812
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 865
SaqAI TTAA 5 cut(s) 86, 155, 167, 758, 1101
SatI GCNGC 5 cut(s) 203, 691, 834, 837, 1348
Sau3AI GATC 6 cut(s) 20, 46, 334, 908, 1139, 1197
ScrFI CCNGG 4 cut(s) 80, 875, 876, 1217
SduI GDGCHC 2 cut(s) 291, 713
SfaNI GCATC 4 cut(s) 500, 592, 614, 1169
SfcI CTRYAG 1 cut(s) 30
SfoI GGCGCC 1 cut(s) 1321
SfuI TTCGAA 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 706, 812
SmlI CTYRAG 3 cut(s) 221, 934, 1131
SmoI CTYRAG 3 cut(s) 221, 934, 1131
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 4 cut(s) 122, 914, 1264, 1278
SsiI CCGC 6 cut(s) 205, 257, 517, 554, 674, 834
SspDI GGCGCC 1 cut(s) 1319
SspMI CTAG 5 cut(s) 150, 441, 576, 594, 1020
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 4 cut(s) 78, 873, 874, 1215
StyI CCWWGG 3 cut(s) 317, 813, 1336
TaaI ACNGT 5 cut(s) 542, 697, 1070, 1119, 1368
TaiI ACGT 3 cut(s) 167, 1028, 1256
TaqI TCGA 6 cut(s) 213, 265, 273, 506, 927, 993
TasI AATT 4 cut(s) 122, 914, 1264, 1278
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 3 cut(s) 463, 1061, 1232
Tru1I TTAA 5 cut(s) 86, 155, 167, 758, 1101
Tru9I TTAA 5 cut(s) 86, 155, 167, 758, 1101
TscAI CASTG 2 cut(s) 1006, 1122
TseI GCWGC 4 cut(s) 202, 690, 836, 1347
TspDTI ATGAA 6 cut(s) 191, 549, 629, 786, 1284, 1395
TspMI CCCGGG 1 cut(s) 874
TspRI CASTG 2 cut(s) 1006, 1122
Van91I CCANNNNNTGG 1 cut(s) 1083
XapI RAATTY 2 cut(s) 914, 1264
XceI RCATGY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmaI CCCGGG 1 cut(s) 874
XspI CTAG 5 cut(s) 150, 441, 576, 594, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.