Rw2G050390
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
78015879 .. 78017777
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050390.1

Sequence Viewer

Length: 1470 bp
ATGCCAAACTCTAATTCAACTGCAGCAGCTGAAGAAACGAAGGTTGAATCCTTTGGCTGCCAAGAAGGGCACAGTGAGGAGAATTACGAACTTGTTAATGCCAAAGCCGAAATGAATGAGGTCAGAAAAGAAAATGCGAGACTGAAAAAGACGTTAGAGCATATGACGAAGGATTACCAGTCCCTACAGTTGCGCTTTTTCGACATCCTCAAACAAGAGTCTCATTCCAAGAAGGCTACAATGAGTGCCAGCACTTCTTATATCAAAATCGAAGAAGCTCATGATCAGCTCTTGTCTCTTTGCCTTGGAAGAAGTCCAAGAGACCCTAAAAATATTAGTGATGAGAGCAGACTTGTACAAGTTGATCATCACCAAGACTTGAAGGCCAACCTTACTCTTGAATTAGGCTCTAAATTGCAGTTGCCGACCGAGCTTGTATTGAGCGGTCCAATTCCCGAGAATAGTTCCGAAGAGCCTAAGGAAGCAGAAGCGTCCCCATCAAGTACTAAAACACCAAGGACAATAAGAAACGAAGATGATGAAGCTTCGCAGCAGGCCAATGCTGCAAAAAGAGCTAGGGTTTCCGTGAGAGCTCGATGTGATACCCCCACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATTGCGAAAGGAAATCCATGCCCCCGAGCATACTATCGATGCACGGTTGCACCAGCATGCCCTGTTAGAAAGCAGGTGCAAAGATGTGTTGATGACATGTCTATCTTGATCACCACCTACGAAGGAACCCACAACCATCCACTTCCAATGACAGCTACTTCCATGGCTTCCACCACCTCTGCCGCGGCTTCCATGTTATTGTCCGGTTCTTCGACATCTCAGCTTCCAGGTCTTGGTTCCAGTTTTGGTCTCTTTGATAATTCCAGACAACAACAGCTCTACTTGCCTAAATTTTCCTCATCTCCTTTGCTACCCACAGTTACTCTAGACCTCACATCCTCTCCATCCCCTTCATCAACCCAATACCGCACATTTCGTCCAAGTGTTAGCTTTTGTTCCTCAGAATCCAACATCAATTTACCAACCAGTTGGGGCAATGGGTACCCTAAATTCGGGACACCGTTTGACAGAAAGAACCAAGAGTGTTTCCAACCCAATCACCAACCCTCTTCTCAGTTGTCTTTAACAGAGACATTGACTAAGGCAATCACATCAGACCCAAATTTCAAGTCGGTAATTGCTGTAGCGCTTTCATCCATGGTTGGAGGTGGTGCTGCAAGTTATGGAAGCCAAGGAATAGGGGAAAGATTAGGGCAACACTTGACACAGAATGCGAAAGGCTGCACATCAAGCATTTTCAACAGTCTGTCATCTTCCGATTCTCAGAAGGGAAACTTGACGCTTCTCCAGCCTCCACTGCCATTTCCCGAGTCCAAGAGCACTTCGTCTTTCCCTGCCATCAGGGATAAAAGTCTCTAA

Protein Analysis

489

Amino Acids

53.36

Weight (kDa)

8.2

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 206 - 264 2.6e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 1 cut(s) 715
Acc65I GGTACC 1 cut(s) 1092
AccB1I GGYRCC 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 884
AccBSI CCGCTC 1 cut(s) 444
AccII CGCG 1 cut(s) 836
AciI CCGC 4 cut(s) 444, 834, 836, 1018
AcsI RAATTY 3 cut(s) 941, 1100, 1213
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 3 cut(s) 357, 505, 1094
AfeI AGCGCT 1 cut(s) 1239
AfiI CCNNNNNNNGG 2 cut(s) 884, 1103
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 18, 47, 382, 401, 1219, 1351
AjnI CCWGG 1 cut(s) 877
AjuI GAANNNNNNNTTGG 1 cut(s) 30
Alw21I GWGCWC 2 cut(s) 595, 1433
Alw26I GTCTC 6 cut(s) 133, 225, 300, 315, 905, 1175
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 3 cut(s) 455, 675, 1418
Aor51HI AGCGCT 1 cut(s) 1239
AoxI GGCC 2 cut(s) 384, 555
ApeKI GCWGC 7 cut(s) 23, 26, 57, 550, 563, 1265, 1332
ApoI RAATTY 3 cut(s) 941, 1100, 1213
ArsI GACNNNNNNTTYG 2 cut(s) 1205, 1237
Asp718I GGTACC 1 cut(s) 1092
AspLEI GCGC 2 cut(s) 195, 1240
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 3 cut(s) 362, 754, 1142
AvaI CYCGRG 3 cut(s) 455, 675, 1418
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 1 cut(s) 595
Bbv12I GWGCWC 2 cut(s) 595, 1433
BbvI GCAGC 7 cut(s) 35, 38, 44, 550, 562, 1252, 1319
BccI CCATC 5 cut(s) 505, 614, 795, 1003, 1457
BciT130I CCWGG 1 cut(s) 879
BclI TGATCA 3 cut(s) 283, 364, 759
BcoDI GTCTC 6 cut(s) 133, 225, 300, 315, 905, 1175
BfaI CTAG 2 cut(s) 576, 977
BfmI CTRYAG 3 cut(s) 21, 185, 1233
BfoI RGCGCY 1 cut(s) 1241
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 9 cut(s) 24, 27, 58, 551, 564, 834, 837, 1266, 1333
BlsI GCNGC 9 cut(s) 25, 28, 59, 552, 565, 835, 838, 1267, 1334
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 1 cut(s) 879
Bme18I GGWCC 1 cut(s) 446
BmeT110I CYCGRG 3 cut(s) 455, 675, 1418
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 3 cut(s) 778, 889, 1094
BmrFI CCNGG 1 cut(s) 879
BmsI GCATC 2 cut(s) 614, 680
BpmI CTGGAG 1 cut(s) 1382
Bsa29I ATCGAT 1 cut(s) 688
BsaI GGTCTC 2 cut(s) 315, 905
BsaJI CCNNGG 6 cut(s) 304, 515, 813, 834, 1248, 1282
BsaWI WCCGGW 1 cut(s) 854
BsaXI ACNNNNNCTCC 2 cut(s) 976, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 884, 1103
Bse1I ACTGG 3 cut(s) 178, 891, 1077
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 1093
BseBI CCWGG 1 cut(s) 879
BseCI ATCGAT 1 cut(s) 688
BseDI CCNNGG 6 cut(s) 304, 515, 813, 834, 1248, 1282
BseGI GGATG 6 cut(s) 204, 629, 787, 986, 995, 1244
BseLI CCNNNNNNNGG 2 cut(s) 884, 1103
BseMI GCAATG 1 cut(s) 1093
BseMII CTCAG 4 cut(s) 884, 1065, 1178, 1388
BseNI ACTGG 3 cut(s) 178, 891, 1077
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 7 cut(s) 35, 38, 44, 550, 562, 1252, 1319
BsgI GTGCAG 1 cut(s) 1318
Bsh1236I CGCG 1 cut(s) 836
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 386, 557
BshNI GGYRCC 1 cut(s) 1092
BshVI ATCGAT 1 cut(s) 688
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 595, 1433
BsiHKCI CYCGRG 3 cut(s) 455, 675, 1418
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 3 cut(s) 166, 478, 1120
BslI CCNNNNNNNGG 2 cut(s) 884, 1103
BsmAI GTCTC 6 cut(s) 133, 225, 300, 315, 905, 1175
BsmFI GGGAC 3 cut(s) 166, 478, 1120
BsmI GAATGC 1 cut(s) 1327
BsnI GGCC 2 cut(s) 386, 557
Bso31I GGTCTC 2 cut(s) 315, 905
BsoBI CYCGRG 3 cut(s) 455, 675, 1418
Bsp1286I GDGCHC 3 cut(s) 72, 595, 1433
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 3 cut(s) 283, 364, 759
Bsp19I CCATGG 2 cut(s) 813, 1248
BspACI CCGC 4 cut(s) 444, 834, 836, 1018
BspANI GGCC 2 cut(s) 386, 557
BspCNI CTCAG 4 cut(s) 883, 1064, 1177, 1387
BspDI ATCGAT 1 cut(s) 688
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 778, 889, 1094
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 715
BspQI GCTCTTC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 1092
BspTNI GGTCTC 2 cut(s) 315, 905
BsrBI CCGCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 1093
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 3 cut(s) 178, 891, 1077
BssECI CCNNGG 6 cut(s) 304, 515, 813, 834, 1248, 1282
BssMI GATC 3 cut(s) 283, 364, 759
BssT1I CCWWGG 5 cut(s) 304, 515, 813, 1248, 1282
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 6 cut(s) 74, 189, 697, 970, 1113, 1355
Bst6I CTCTTC 2 cut(s) 465, 1165
BstAUI TGTACA 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 250, 555, 709
BstDEI CTNAG 6 cut(s) 477, 870, 1051, 1164, 1191, 1374
BstDSI CCRYGG 3 cut(s) 813, 834, 1248
BstF5I GGATG 6 cut(s) 204, 629, 787, 986, 995, 1244
BstFNI CGCG 1 cut(s) 836
BstH2I RGCGCY 1 cut(s) 1241
BstHHI GCGC 2 cut(s) 195, 1240
BstKTI GATC 3 cut(s) 286, 367, 762
BstMAI GTCTC 6 cut(s) 133, 225, 300, 315, 905, 1175
BstMBI GATC 3 cut(s) 283, 364, 759
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 7 cut(s) 430, 563, 572, 934, 1341, 1399, 1408
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 2 cut(s) 711, 751
BstSCI CCNGG 1 cut(s) 877
BstSFI CTRYAG 3 cut(s) 21, 185, 1233
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 7 cut(s) 35, 38, 44, 550, 562, 1252, 1319
BstXI CCANNNNNNTGG 1 cut(s) 1080
Bsu15I ATCGAT 1 cut(s) 688
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 386, 557
BsuTUI ATCGAT 1 cut(s) 688
BtgI CCRYGG 3 cut(s) 813, 834, 1248
BtsCI GGATG 6 cut(s) 204, 629, 787, 986, 995, 1244
BtsI GCAGTG 1 cut(s) 1406
BtsIMutI CAGTG 2 cut(s) 79, 1406
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 250, 555, 709
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 280
CfoI GCGC 2 cut(s) 195, 1240
Cfr13I GGNCC 1 cut(s) 446
Cfr42I CCGCGG 1 cut(s) 837
ClaI ATCGAT 1 cut(s) 688
CseI GACGC 2 cut(s) 480, 1399
Csp6I GTAC 3 cut(s) 356, 504, 1093
CviAII CATG 7 cut(s) 281, 669, 708, 748, 814, 844, 1249
CviQI GTAC 3 cut(s) 356, 504, 1093
DdeI CTNAG 6 cut(s) 477, 870, 1051, 1164, 1191, 1374
DpnI GATC 3 cut(s) 285, 366, 761
DpnII GATC 3 cut(s) 283, 364, 759
Eam1104I CTCTTC 2 cut(s) 465, 1165
EarI CTCTTC 2 cut(s) 465, 1165
Ecl136II GAGCTC 1 cut(s) 593
Eco130I CCWWGG 5 cut(s) 304, 515, 813, 1248, 1282
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 2 cut(s) 315, 905
Eco47I GGWCC 1 cut(s) 446
Eco47III AGCGCT 1 cut(s) 1239
Eco53kI GAGCTC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 477
Eco88I CYCGRG 3 cut(s) 455, 675, 1418
EcoICRI GAGCTC 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 5 cut(s) 304, 515, 813, 1248, 1282
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 5 cut(s) 304, 515, 813, 1248, 1282
FaeI CATG 7 cut(s) 284, 672, 711, 751, 817, 847, 1252
FalI AAGNNNNNCTT 2 cut(s) 1370, 1402
FaqI GGGAC 3 cut(s) 166, 478, 1120
FatI CATG 7 cut(s) 280, 668, 707, 747, 813, 843, 1248
FauNDI CATATG 1 cut(s) 162
FbaI TGATCA 3 cut(s) 283, 364, 759
Fnu4HI GCNGC 9 cut(s) 24, 27, 58, 551, 564, 834, 837, 1266, 1333
FokI GGATG 6 cut(s) 191, 636, 774, 973, 982, 1231
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 9 cut(s) 24, 27, 58, 551, 564, 834, 837, 1266, 1333
FspBI CTAG 2 cut(s) 576, 977
GlaI GCGC 2 cut(s) 194, 1239
GluI GCNGC 9 cut(s) 24, 27, 58, 551, 564, 834, 837, 1266, 1333
GsuI CTGGAG 1 cut(s) 1382
HaeII RGCGCY 1 cut(s) 1241
HaeIII GGCC 2 cut(s) 386, 557
HapII CCGG 1 cut(s) 855
HgaI GACGC 2 cut(s) 480, 1399
HhaI GCGC 2 cut(s) 195, 1240
Hin1II CATG 7 cut(s) 284, 672, 711, 751, 817, 847, 1252
Hin6I GCGC 2 cut(s) 193, 1238
HinP1I GCGC 2 cut(s) 193, 1238
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 5 cut(s) 47, 218, 1055, 1370, 1421
HpaII CCGG 1 cut(s) 855
HphI GGTGA 3 cut(s) 362, 754, 1142
Hpy188I TCNGA 6 cut(s) 125, 469, 1054, 1207, 1369, 1377
Hpy188III TCNNGA 8 cut(s) 281, 398, 455, 757, 915, 977, 1105, 1418
HpyAV CCTTC 8 cut(s) 34, 59, 163, 226, 376, 767, 1011, 1372
HpyCH4III ACNGT 6 cut(s) 74, 189, 697, 970, 1113, 1355
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 8 cut(s) 23, 418, 566, 693, 701, 730, 1268, 1335
HpyF10VI GCNNNNNNNGC 7 cut(s) 430, 563, 572, 934, 1341, 1399, 1408
HpyF3I CTNAG 6 cut(s) 477, 870, 1051, 1164, 1191, 1374
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 7 cut(s) 284, 672, 711, 751, 817, 847, 1252
HspAI GCGC 2 cut(s) 193, 1238
KpnI GGTACC 1 cut(s) 1096
Ksp22I TGATCA 3 cut(s) 283, 364, 759
KspI CCGCGG 1 cut(s) 837
Kzo9I GATC 3 cut(s) 283, 364, 759
LguI GCTCTTC 1 cut(s) 465
Lsp1109I GCAGC 7 cut(s) 35, 38, 44, 550, 562, 1252, 1319
LweI GCATC 2 cut(s) 614, 680
MaeI CTAG 2 cut(s) 576, 977
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 970
MalI GATC 3 cut(s) 285, 366, 761
MbiI CCGCTC 1 cut(s) 444
MboI GATC 3 cut(s) 283, 364, 759
MboII GAAGA 9 cut(s) 44, 284, 321, 482, 545, 661, 852, 1152, 1356
MhlI GDGCHC 3 cut(s) 72, 595, 1433
MlyI GAGTC 2 cut(s) 227, 1430
MmeI TCCRAC 3 cut(s) 1083, 1165, 1234
MseI TTAA 2 cut(s) 96, 1175
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 2 cut(s) 29, 836
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 1327
MvaI CCWGG 1 cut(s) 879
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 7 cut(s) 430, 563, 572, 934, 1341, 1399, 1408
NcoI CCATGG 2 cut(s) 813, 1248
NdeI CATATG 1 cut(s) 162
NdeII GATC 3 cut(s) 283, 364, 759
NlaIII CATG 7 cut(s) 284, 672, 711, 751, 817, 847, 1252
NlaIV GGNNCC 3 cut(s) 778, 889, 1094
NspI RCATGY 2 cut(s) 711, 751
PaeI GCATGC 1 cut(s) 711
PagI TCATGA 1 cut(s) 280
PaqCI CACCTGC 1 cut(s) 715
PciI ACATGT 1 cut(s) 747
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 1 cut(s) 1327
PfeI GAWTC 3 cut(s) 47, 1055, 1370
PflMI CCANNNNNTGG 1 cut(s) 884
PkrI GCNGC 9 cut(s) 25, 28, 59, 552, 565, 835, 838, 1267, 1334
PleI GAGTC 2 cut(s) 226, 1429
PpsI GAGTC 2 cut(s) 226, 1429
PscI ACATGT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 877
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 3 cut(s) 778, 889, 1094
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 3 cut(s) 357, 505, 1094
RsaNI GTAC 3 cut(s) 356, 504, 1093
RseI CAYNNNNRTG 1 cut(s) 706
SacI GAGCTC 1 cut(s) 595
SacII CCGCGG 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 96, 1175
SatI GCNGC 9 cut(s) 24, 27, 58, 551, 564, 834, 837, 1266, 1333
Sau3AI GATC 3 cut(s) 283, 364, 759
Sau96I GGNCC 1 cut(s) 446
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 2 cut(s) 227, 1430
ScrFI CCNGG 1 cut(s) 879
SduI GDGCHC 3 cut(s) 72, 595, 1433
SfaNI GCATC 2 cut(s) 614, 680
SfcI CTRYAG 3 cut(s) 21, 185, 1233
Sfr303I CCGCGG 1 cut(s) 837
SgrBI CCGCGG 1 cut(s) 837
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 706
SphI GCATGC 1 cut(s) 711
SsiI CCGC 4 cut(s) 444, 834, 836, 1018
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 576, 977
SstI GAGCTC 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 877
StyI CCWWGG 5 cut(s) 304, 515, 813, 1248, 1282
TaaI ACNGT 6 cut(s) 74, 189, 697, 970, 1113, 1355
TaiI ACGT 1 cut(s) 155
TaqI TCGA 5 cut(s) 201, 270, 595, 688, 863
TaqII GACCGA 1 cut(s) 443
TatI WGTACW 2 cut(s) 355, 503
TauI GCSGC 2 cut(s) 836, 839
TfiI GAWTC 3 cut(s) 47, 1055, 1370
Tru1I TTAA 2 cut(s) 96, 1175
Tru9I TTAA 2 cut(s) 96, 1175
TscAI CASTG 2 cut(s) 79, 1413
TseI GCWGC 7 cut(s) 23, 26, 57, 550, 563, 1265, 1332
TspDTI ATGAA 5 cut(s) 128, 555, 629, 993, 1233
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 2 cut(s) 79, 1413
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 3 cut(s) 941, 1100, 1213
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 2 cut(s) 711, 751
XspI CTAG 2 cut(s) 576, 977
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.