Prupe.3G270800_v2.0.a1
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011709
Physical Location & Seq
Reverse (-)
25181838 .. 25184871
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G270800.1

Sequence Viewer

Length: 1512 bp
ATGCCAAACTCTAATAGTAGAACAGCCCCAGAGAAGAAAGTTGATGAATCTGTTGGCTATCAAGAGATTTACAGTCAGGAGGAGAGTGAACTTGAAAATGCTAGAGCTGAAATGGGTGAGGTGAGAGAAGAAAATGCCAGACTAAAATTGACCTTACAGCATATGGAGAAGGATTACCAGTCTCTCCAATGTCGTTTTCTTGACATCCTTAGACAAGAGGCTTCCAAGAAAGCTACAAATGTTGATGTTGGTGTTCATCGAATCGAAGAACCCAATCAGCTCTTGTCTCTTTGCCTTGGAAGAAGTCCAAGGGAGCCCAAAAATGATGAAACTAATACCACCAACTTCACCAAACTTGTACAAGTTGATCATGAAGACTTAAATGCCAACCTTACTCTTGGATTAGCTAACTCTAAATTAATGGAGTTGCCTATGGAGCTTGTGCGTAGCCAAAAACCTCAGGAGACTAGTTTGGAAGAGCCCAAGGATCATTCAGAAGCTGGAGCTGGAGAATCTTTGCCTCCATCAAGTAAAACACCAAAGACAACGAGAAATGAAGATGATGAAGTTCCACAGCAGGCCAATGCAAAAAGAGCTAGGGTTTCTGTCAGAGTTAGATGCGATACCCCAACGATGAACGATGGATGCCAATGGAGAAAATATGGACAGAAGATTGCAAAAGGAAATCCATGCCCACGAGCATACTACCGCTGCACAGTTGCACCAGCATGCCCTGTGAGAAAGCAGGTGCAAAGATGTTATGAGGATATGTCCATCTTAATCACCACCTACGAAGGAACCCACAACCACCCGCTTCCATTCACAGCCTCTTCCATGGCTTCCACCACCGCTGCAGCAGCTTCCATGCTATTGTCTGGCTCCTCCACATCTCAGCCGGGTTTCGGTTCCACAGCTACTCTACTCAATGGATCAAATTTTGGTGTCTTTGACAGTTCAATAACAAACCAGCTCTACTTGCCCAAATCTTCCAACCCTTTGCTCCCCACAATCACTCTAGACCTCACTGCCTCTCCATCCTCTTCACCAATCCATTTGAATAGGTTGTCTTCTAGCTTTGCTTCAGCTTGCCCATTCCCTTCAAGCCTCAGCTTTTGTTCCTCAGAGTCCAACATTTCGCCCAACAGTAGGGGCAATGGATACCTTAAATATGGCTCACTGCCGTTTGACAAAGGGTCCTTCAATCTAGATCAACCTTATGCAGAAAAGAATCAGCAATCTTCTTCTCAGTTGTCTTTAACAGAATCTTTAACCAAGGCAATCACGTCAGACCCTAATTTCAAATCAGTAATTGCCGTAGCACTTTCATCAATGGTTGGAGGTGGTGCTGCTACTCATCGAAACCAAGGCGAAGGCGAAAGATTAGGACACCACTTGAAGTGGAGTGAAGCTGCACATCAGTTTACTTCTCATAATCCATTGATACAGAACGGGAAACGATGCAGCACACCGAGCATTTTCAACAGATTGTCATCTTCAGACTCTCAAAAGTGA

Protein Analysis

504

Amino Acids

55.1

Weight (kDa)

6.87

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011709)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15130 AT5G15130
fragaria_vesca FvH4_6g49140 FvH4_6g49140
malus_domestica MD09G1048200.v1.1 MD09G1048300.v1.1 MD17G1048400.v1.1
prunus_persica Prupe.3G270800_v2.0.a1
pyrus_communis pycom111g03910
rosa_chinensis RchiOBHm_Chr2g0169011
rosa_laevigata RLG00000021823
rosa_multiflora Rmu_ssc0000393.1_g000021
rosa_roxburghii Rroxscaffold_2G00082540
rosa_rugosa Rorug02G0536500
rosa_samantha Rh2AG607700 Rh2BG620200 Rh2CG589200 Rh2DG631000
rosa_wichuraiana Rw2G050390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 736
Acc36I ACCTGC 1 cut(s) 736
AciI CCGC 3 cut(s) 709, 812, 849
AclWI GGATC 2 cut(s) 495, 937
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 2 cut(s) 1065, 1479
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 902, 1146
AgsI TTSAA 8 cut(s) 95, 957, 1057, 1101, 1201, 1300, 1396, 1480
AhdI GACNNNNNGTC 1 cut(s) 1192
AhlI ACTAGT 1 cut(s) 467
AjiI CACGTC 1 cut(s) 1284
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
Alw26I GTCTC 3 cut(s) 186, 291, 458
AlwI GGATC 2 cut(s) 495, 937
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 7 cut(s) 711, 851, 854, 857, 1346, 1409, 1461
ApoI RAATTY 1 cut(s) 934
AseI ATTAAT 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 1194
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 5 cut(s) 128, 133, 340, 775, 1035
AvaII GGWCC 1 cut(s) 1194
AxyI CCTNAGG 1 cut(s) 459
BanII GRGCYC 2 cut(s) 318, 483
BauI CACGAG 1 cut(s) 696
BbsI GAAGAC 2 cut(s) 381, 1059
BbvCI CCTCAGC 1 cut(s) 1106
BbvI GCAGC 7 cut(s) 698, 838, 866, 869, 1333, 1396, 1473
BccI CCATC 4 cut(s) 532, 635, 782, 1042
BceAI ACGGC 2 cut(s) 1165, 1298
BciVI GTATCC 1 cut(s) 1151
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 3 cut(s) 186, 291, 458
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 6 cut(s) 102, 468, 597, 1016, 1071, 1205
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 736
BfuI GTATCC 1 cut(s) 1151
BisI GCNGC 7 cut(s) 712, 852, 855, 858, 1347, 1410, 1462
BlsI GCNGC 7 cut(s) 713, 853, 856, 859, 1348, 1411, 1463
Bme1390I CCNGG 1 cut(s) 897
Bme18I GGWCC 1 cut(s) 1194
BmeRI GACNNNNNGTC 1 cut(s) 1192
BmgBI CACGTC 1 cut(s) 1284
BmgT120I GGNCC 1 cut(s) 1194
BmiI GGNNCC 5 cut(s) 315, 799, 880, 907, 1195
BmrFI CCNGG 1 cut(s) 897
BmsI GCATC 3 cut(s) 608, 635, 1448
BpiI GAAGAC 2 cut(s) 381, 1059
BpmI CTGGAG 2 cut(s) 522, 528
Bpu10I CCTNAGC 1 cut(s) 1106
BpuMI CCSGG 1 cut(s) 897
BsaBI GATNNNNATC 1 cut(s) 1489
BsaJI CCNNGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
BsaXI ACNNNNNCTCC 2 cut(s) 1015, 1045
Bsc4I CCNNNNNNNGG 2 cut(s) 902, 1146
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 1159
Bse8I GATNNNNATC 1 cut(s) 1489
BseDI CCNNGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
BseGI GGATG 3 cut(s) 204, 650, 1034
BseJI GATNNNNATC 1 cut(s) 1489
BseLI CCNNNNNNNGG 2 cut(s) 902, 1146
BseMI GCAATG 1 cut(s) 1159
BseMII CTCAG 5 cut(s) 473, 905, 1120, 1134, 1259
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 2 cut(s) 95, 871
BseXI GCAGC 7 cut(s) 698, 838, 866, 869, 1333, 1396, 1473
BsgI GTGCAG 2 cut(s) 697, 1395
BshFI GGCC 1 cut(s) 581
BsiSI CCGG 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 902, 1146
BsmAI GTCTC 3 cut(s) 186, 291, 458
BsnI GGCC 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 318, 483
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 4 cut(s) 367, 487, 929, 1207
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 3 cut(s) 709, 812, 849
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 5 cut(s) 472, 904, 1119, 1133, 1258
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 5 cut(s) 315, 799, 880, 907, 1195
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 2 cut(s) 495, 937
BspQI GCTCTTC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 1159
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
BssMI GATC 4 cut(s) 367, 487, 929, 1207
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
Bst2BI CACGAG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 74, 718, 953, 1145
Bst6I CTCTTC 3 cut(s) 471, 835, 1045
BstAUI TGTACA 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 579, 730, 1087
BstDEI CTNAG 6 cut(s) 209, 459, 891, 1106, 1120, 1245
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 3 cut(s) 204, 650, 1034
BstKTI GATC 4 cut(s) 370, 490, 932, 1210
BstMAI GTCTC 3 cut(s) 186, 291, 458
BstMBI GATC 4 cut(s) 367, 487, 929, 1207
BstMWI GCNNNNNNNGC 5 cut(s) 436, 593, 857, 976, 1470
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 1 cut(s) 895
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 7 cut(s) 698, 838, 866, 869, 1333, 1396, 1473
BstV2I GAAGAC 2 cut(s) 381, 1059
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 1151
BsuRI GGCC 1 cut(s) 581
BtgI CCRYGG 1 cut(s) 834
BtrI CACGTC 1 cut(s) 1284
BtsCI GGATG 3 cut(s) 204, 650, 1034
BtsI GCAGTG 2 cut(s) 1023, 1175
BtsIMutI CAGTG 2 cut(s) 1023, 1175
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 579, 730, 1087
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 1194
Csp6I GTAC 1 cut(s) 359
CviAII CATG 5 cut(s) 371, 690, 729, 835, 865
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 6 cut(s) 209, 459, 891, 1106, 1120, 1245
DpnI GATC 4 cut(s) 369, 489, 931, 1209
DpnII GATC 4 cut(s) 367, 487, 929, 1207
DriI GACNNNNNGTC 1 cut(s) 1192
Eam1104I CTCTTC 3 cut(s) 471, 835, 1045
Eam1105I GACNNNNNGTC 1 cut(s) 1192
EarI CTCTTC 3 cut(s) 471, 835, 1045
Eco130I CCWWGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
Eco24I GRGCYC 2 cut(s) 318, 483
Eco47I GGWCC 1 cut(s) 1194
Eco57I CTGAAG 2 cut(s) 1065, 1479
Eco81I CCTNAGG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 1194
EcoT14I CCWWGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
EcoT38I GRGCYC 2 cut(s) 318, 483
ErhI CCWWGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
FaeI CATG 5 cut(s) 374, 693, 732, 838, 868
FatI CATG 5 cut(s) 370, 689, 728, 834, 864
FauI CCCGC 1 cut(s) 819
FauNDI CATATG 1 cut(s) 162
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 7 cut(s) 712, 852, 855, 858, 1347, 1410, 1462
FokI GGATG 3 cut(s) 191, 657, 1021
FriOI GRGCYC 2 cut(s) 318, 483
Fsp4HI GCNGC 7 cut(s) 712, 852, 855, 858, 1347, 1410, 1462
FspBI CTAG 6 cut(s) 102, 468, 597, 1016, 1071, 1205
GluI GCNGC 7 cut(s) 712, 852, 855, 858, 1347, 1410, 1462
GsuI CTGGAG 2 cut(s) 522, 528
HaeIII GGCC 1 cut(s) 581
HapII CCGG 1 cut(s) 896
Hin1II CATG 5 cut(s) 374, 693, 732, 838, 868
HinfI GANTC 7 cut(s) 47, 261, 512, 1124, 1228, 1262, 1499
HpaII CCGG 1 cut(s) 896
HphI GGTGA 5 cut(s) 128, 133, 340, 775, 1035
Hpy166II GTNNAC 2 cut(s) 89, 1422
Hpy188I TCNGA 5 cut(s) 496, 611, 1123, 1288, 1498
Hpy188III TCNNGA 7 cut(s) 62, 77, 200, 371, 461, 1016, 1205
Hpy8I GTNNAC 2 cut(s) 89, 1422
HpyAV CCTTC 5 cut(s) 163, 788, 1107, 1207, 1364
HpyCH4III ACNGT 4 cut(s) 74, 718, 953, 1145
HpyCH4IV ACGT 1 cut(s) 1283
HpyCH4V TGCA 9 cut(s) 587, 677, 714, 722, 751, 854, 1220, 1412, 1461
HpyF10VI GCNNNNNNNGC 5 cut(s) 436, 593, 857, 976, 1470
HpyF3I CTNAG 6 cut(s) 209, 459, 891, 1106, 1120, 1245
HpySE526I ACGT 1 cut(s) 1283
Hsp92II CATG 5 cut(s) 374, 693, 732, 838, 868
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 4 cut(s) 367, 487, 929, 1207
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 5 cut(s) 313, 436, 503, 884, 1005
Lsp1109I GCAGC 7 cut(s) 698, 838, 866, 869, 1333, 1396, 1473
LweI GCATC 3 cut(s) 608, 635, 1448
MaeI CTAG 6 cut(s) 102, 468, 597, 1016, 1071, 1205
MaeII ACGT 1 cut(s) 1283
MalI GATC 4 cut(s) 369, 489, 931, 1209
MboI GATC 4 cut(s) 367, 487, 929, 1207
MhlI GDGCHC 2 cut(s) 318, 483
MluCI AATT 5 cut(s) 146, 416, 934, 1294, 1308
MlyI GAGTC 2 cut(s) 1133, 1493
MmeI TCCRAC 3 cut(s) 1014, 1152, 1315
MseI TTAA 6 cut(s) 380, 419, 779, 1164, 1256, 1268
MslI CAYNNNNRTG 1 cut(s) 727
MspA1I CMGCKG 2 cut(s) 711, 851
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 1 cut(s) 897
MwoI GCNNNNNNNGC 5 cut(s) 436, 593, 857, 976, 1470
NciI CCSGG 1 cut(s) 897
NcoI CCATGG 1 cut(s) 834
NdeI CATATG 1 cut(s) 162
NdeII GATC 4 cut(s) 367, 487, 929, 1207
NlaIII CATG 5 cut(s) 374, 693, 732, 838, 868
NlaIV GGNNCC 5 cut(s) 315, 799, 880, 907, 1195
NspI RCATGY 1 cut(s) 732
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 471
PfeI GAWTC 5 cut(s) 47, 261, 512, 1228, 1262
PkrI GCNGC 7 cut(s) 713, 853, 856, 859, 1348, 1411, 1463
PleI GAGTC 2 cut(s) 1132, 1493
PpsI GAGTC 2 cut(s) 1132, 1493
PpuMI RGGWCCY 1 cut(s) 1194
PshBI ATTAAT 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 1194
PspN4I GGNNCC 5 cut(s) 315, 799, 880, 907, 1195
PspPI GGNCC 1 cut(s) 1194
PspPPI RGGWCCY 1 cut(s) 1194
PstI CTGCAG 1 cut(s) 856
PstNI CAGNNNCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 727
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 6 cut(s) 380, 419, 779, 1164, 1256, 1268
SatI GCNGC 7 cut(s) 712, 852, 855, 858, 1347, 1410, 1462
Sau3AI GATC 4 cut(s) 367, 487, 929, 1207
Sau96I GGNCC 1 cut(s) 1194
SchI GAGTC 2 cut(s) 1133, 1493
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 2 cut(s) 318, 483
SfaNI GCATC 3 cut(s) 608, 635, 1448
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 1 cut(s) 1194
SmiMI CAYNNNNRTG 1 cut(s) 727
SpeI ACTAGT 1 cut(s) 467
SphI GCATGC 1 cut(s) 732
Sse9I AATT 5 cut(s) 146, 416, 934, 1294, 1308
SsiI CCGC 3 cut(s) 709, 812, 849
SspMI CTAG 6 cut(s) 102, 468, 597, 1016, 1071, 1205
StyD4I CCNGG 1 cut(s) 895
StyI CCWWGG 6 cut(s) 295, 308, 483, 834, 1272, 1363
TaaI ACNGT 4 cut(s) 74, 718, 953, 1145
TaiI ACGT 1 cut(s) 1286
TaqI TCGA 3 cut(s) 259, 264, 1357
TasI AATT 5 cut(s) 146, 416, 934, 1294, 1308
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 5 cut(s) 47, 261, 512, 1228, 1262
Tru1I TTAA 6 cut(s) 380, 419, 779, 1164, 1256, 1268
Tru9I TTAA 6 cut(s) 380, 419, 779, 1164, 1256, 1268
TscAI CASTG 2 cut(s) 1030, 1182
TseI GCWGC 7 cut(s) 711, 851, 854, 857, 1346, 1409, 1461
TspDTI ATGAA 8 cut(s) 60, 245, 342, 387, 570, 579, 650, 1314
TspRI CASTG 2 cut(s) 1030, 1182
VpaK11BI GGWCC 1 cut(s) 1194
VspI ATTAAT 1 cut(s) 419
XapI RAATTY 1 cut(s) 934
XbaI TCTAGA 2 cut(s) 1015, 1204
XceI RCATGY 1 cut(s) 732
XspI CTAG 6 cut(s) 102, 468, 597, 1016, 1071, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.