RLG00000021823
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
78592964 .. 78594859
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021823

Sequence Viewer

Length: 1467 bp
ATGCCAAACTCTAATTCAACAGCAGCAGCTGAAGAAACGAAGGTTGAATCCTTTGGCTACCAAGAAGGGCACAGTGAGGAGAAGAATTATGAACTTGTTAATGCCAAAGCCGAAATGAATGAGGTCAGAGAAGAAAATGCGAGACTGAAAAAGACGTTAGAGCATATGATGAAGGATTACCAGTCTCTACAGTTGCGCTTTTTTGACATCCTCAAACAAGAGTCTCATTCCAAGAAGGCTACAATGAGTGCCAGCACCTCTCATATCGAAATCGAAGAAGCTCATGATCAGCTCTTGTCTCTTTGCCTTGGAAGAAGTCCAAGAGACCCTAAAAATATTAGTGATGAGAGCAAAATTATACAAGTTGATCATCACCAAGACTTGAAGGCCAACCTTACTCTTGAATTAGGCTCTAAATTGCAGTTGCCGACGGAGCTTGTATTGAGCGGTCCAATTCCCGAGAATAGTTCCGAAGAGCCCAAGGAAGCAGAAGCGTCCCCATCAAGTACTAAAACCCCAAAGACAATGAGAAACGAAGATGATGAAGCTTCGCAGCAGGCCAATGCTGCAAAAAGAGCTAGGGTTTCCGTGAGAGCTCGATGTGATACCCCCACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAGATTGCGAAAGGAAATCCATGCCCCCGAGCATACTATCGATGCACGGTTGCACCAGCATGCCCTGTTAGAAAGCAGGTGCAAAGATGTATTGATGACATGTCTATCTTGATCACCACCTACGAAGGAACCCACAACCATCCACTTCCAATGACAGCCACTCCCATGGCTTCCACCACCTCTGCCGCGGCTTCCATGTTATTGTCCGGCTCTTCGACATCTCAGCTTCCAGGTCTTGGTTCCAGTTTTGGTCTCTTCGATAATTCCAGACGACAACAGCTCTACTTGCCTAAATTTTCCTCATCTCCTTTGCTACCCACAGTTACTCTAGACCTCACATCTTCTCCATCCCCTTCATCAACCCAATACTGCACATTTCCTCCAAGTGTTAGCTTTTGTTCCTCAGAATCCAACATCAATTTACCGACCAGTTGGGGCAATGGGTACCCTAAATTCGGGACACCGTTTGACAGAAAGAACCAAGAGTGTTTCCAACCCAATCACCAAGCCTCTTCTCAGGTGTCCTTAACAGAGACATTGACCAAGGCAATCACATCAGACCCAAATTTCAAGTCGGTAATTGCTGTAGCGCTTTCATCTATGGTTGGAGGTGGTGCTGCAAGTTATGGAAGCCAAGGAATAGGGGAAAGGCAACACTTGACACAGAATGCGAAAGGCTGCGCATCAAGCATTTTCAACAGTTTGTCATCTTCCGATTCTCAGAAGGGAAACTTGACGCTTTTGCACCCTCCACCGCCATTTCCCCAGTCCAAGAGCACTTCGTCTTCCCCTGCCATCAGGGATAAAAGTCTCTAA

Protein Analysis

489

Amino Acids

53.16

Weight (kDa)

7.16

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 207 - 265 1.8e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011709)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 718
Acc16I TGCGCA 1 cut(s) 1333
Acc36I ACCTGC 1 cut(s) 718
Acc65I GGTACC 1 cut(s) 1095
AccB1I GGYRCC 1 cut(s) 1095
AccB7I CCANNNNNTGG 1 cut(s) 887
AccBSI CCGCTC 1 cut(s) 447
AccII CGCG 1 cut(s) 839
AciI CCGC 4 cut(s) 447, 837, 839, 1406
AcsI RAATTY 3 cut(s) 944, 1103, 1216
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 508, 1097
AfeI AGCGCT 1 cut(s) 1242
AfiI CCNNNNNNNGG 2 cut(s) 887, 1106
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 6 cut(s) 18, 47, 385, 404, 1222, 1348
AjnI CCWGG 1 cut(s) 880
AjuI GAANNNNNNNTTGG 1 cut(s) 30
Alw21I GWGCWC 2 cut(s) 598, 1430
Alw26I GTCTC 7 cut(s) 136, 189, 228, 303, 318, 908, 1178
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 2 cut(s) 458, 678
Aor51HI AGCGCT 1 cut(s) 1242
AoxI GGCC 2 cut(s) 387, 558
ApeKI GCWGC 6 cut(s) 23, 26, 553, 566, 1268, 1329
ApoI RAATTY 3 cut(s) 944, 1103, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
Asp718I GGTACC 1 cut(s) 1095
AspLEI GCGC 3 cut(s) 198, 1243, 1334
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 365, 757, 1145
AvaI CYCGRG 2 cut(s) 458, 678
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 1095
BanII GRGCYC 2 cut(s) 480, 598
BbsI GAAGAC 1 cut(s) 1428
Bbv12I GWGCWC 2 cut(s) 598, 1430
BbvI GCAGC 6 cut(s) 35, 38, 553, 565, 1255, 1316
BccI CCATC 5 cut(s) 508, 617, 798, 1006, 1454
BciT130I CCWGG 1 cut(s) 882
BclI TGATCA 3 cut(s) 286, 367, 762
BcoDI GTCTC 7 cut(s) 136, 189, 228, 303, 318, 908, 1178
BfaI CTAG 2 cut(s) 579, 980
BfmI CTRYAG 2 cut(s) 188, 1236
BfoI RGCGCY 1 cut(s) 1244
BfuAI ACCTGC 1 cut(s) 718
BisI GCNGC 8 cut(s) 24, 27, 554, 567, 837, 840, 1269, 1330
BlsI GCNGC 8 cut(s) 25, 28, 555, 568, 838, 841, 1270, 1331
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 2 cut(s) 458, 678
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 3 cut(s) 781, 892, 1097
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 1411
BmsI GCATC 3 cut(s) 617, 683, 1343
BmuI ACTGGG 1 cut(s) 1411
BpiI GAAGAC 1 cut(s) 1428
Bsa29I ATCGAT 1 cut(s) 691
BsaI GGTCTC 2 cut(s) 318, 908
BsaJI CCNNGG 6 cut(s) 307, 480, 816, 837, 1194, 1285
BsaXI ACNNNNNCTCC 6 cut(s) 796, 826, 979, 1009, 1015, 1045
Bsc4I CCNNNNNNNGG 2 cut(s) 887, 1106
Bse1I ACTGG 4 cut(s) 181, 894, 1080, 1417
Bse3DI GCAATG 1 cut(s) 1096
BseBI CCWGG 1 cut(s) 882
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 6 cut(s) 307, 480, 816, 837, 1194, 1285
BseGI GGATG 4 cut(s) 207, 632, 790, 998
BseLI CCNNNNNNNGG 2 cut(s) 887, 1106
BseMI GCAATG 1 cut(s) 1096
BseMII CTCAG 4 cut(s) 887, 1068, 1181, 1385
BseNI ACTGG 4 cut(s) 181, 894, 1080, 1417
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 6 cut(s) 35, 38, 553, 565, 1255, 1316
BsgI GTGCAG 1 cut(s) 1006
Bsh1236I CGCG 1 cut(s) 839
BshFI GGCC 2 cut(s) 389, 560
BshNI GGYRCC 1 cut(s) 1095
BshVI ATCGAT 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 598, 1430
BsiHKCI CYCGRG 2 cut(s) 458, 678
BsiSI CCGG 1 cut(s) 858
BslFI GGGAC 2 cut(s) 481, 1123
BslI CCNNNNNNNGG 2 cut(s) 887, 1106
BsmAI GTCTC 7 cut(s) 136, 189, 228, 303, 318, 908, 1178
BsmFI GGGAC 2 cut(s) 481, 1123
BsmI GAATGC 1 cut(s) 1324
BsnI GGCC 2 cut(s) 389, 560
Bso31I GGTCTC 2 cut(s) 318, 908
BsoBI CYCGRG 2 cut(s) 458, 678
Bsp1286I GDGCHC 4 cut(s) 72, 480, 598, 1430
Bsp143I GATC 3 cut(s) 286, 367, 762
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 4 cut(s) 447, 837, 839, 1406
BspANI GGCC 2 cut(s) 389, 560
BspCNI CTCAG 4 cut(s) 886, 1067, 1180, 1384
BspDI ATCGAT 1 cut(s) 691
BspFNI CGCG 1 cut(s) 839
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 781, 892, 1097
BspMI ACCTGC 1 cut(s) 718
BspQI GCTCTTC 2 cut(s) 468, 868
BspT107I GGYRCC 1 cut(s) 1095
BspTNI GGTCTC 2 cut(s) 318, 908
BsrBI CCGCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 1096
BsrI ACTGG 4 cut(s) 181, 894, 1080, 1417
BssECI CCNNGG 6 cut(s) 307, 480, 816, 837, 1194, 1285
BssMI GATC 3 cut(s) 286, 367, 762
BssT1I CCWWGG 5 cut(s) 307, 480, 816, 1194, 1285
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 6 cut(s) 74, 192, 700, 973, 1116, 1352
Bst6I CTCTTC 4 cut(s) 468, 868, 911, 1168
BstC8I GCNNGC 3 cut(s) 253, 558, 712
BstDEI CTNAG 4 cut(s) 873, 1054, 1167, 1371
BstDSI CCRYGG 2 cut(s) 816, 837
BstF5I GGATG 4 cut(s) 207, 632, 790, 998
BstFNI CGCG 1 cut(s) 839
BstH2I RGCGCY 1 cut(s) 1244
BstHHI GCGC 3 cut(s) 198, 1243, 1334
BstKTI GATC 3 cut(s) 289, 370, 765
BstMAI GTCTC 7 cut(s) 136, 189, 228, 303, 318, 908, 1178
BstMBI GATC 3 cut(s) 286, 367, 762
BstMWI GCNNNNNNNGC 5 cut(s) 433, 566, 575, 937, 1338
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 2 cut(s) 714, 754
BstSCI CCNGG 1 cut(s) 880
BstSFI CTRYAG 2 cut(s) 188, 1236
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 839
BstV1I GCAGC 6 cut(s) 35, 38, 553, 565, 1255, 1316
BstV2I GAAGAC 1 cut(s) 1428
BstXI CCANNNNNNTGG 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 691
BsuRI GGCC 2 cut(s) 389, 560
BsuTUI ATCGAT 1 cut(s) 691
BtgI CCRYGG 2 cut(s) 816, 837
BtsCI GGATG 4 cut(s) 207, 632, 790, 998
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 3 cut(s) 253, 558, 712
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 283
CfoI GCGC 3 cut(s) 198, 1243, 1334
Cfr13I GGNCC 1 cut(s) 449
Cfr42I CCGCGG 1 cut(s) 840
ClaI ATCGAT 1 cut(s) 691
CseI GACGC 2 cut(s) 483, 1396
Csp6I GTAC 2 cut(s) 507, 1096
CviAII CATG 6 cut(s) 284, 672, 711, 751, 817, 847
CviQI GTAC 2 cut(s) 507, 1096
DdeI CTNAG 4 cut(s) 873, 1054, 1167, 1371
DpnI GATC 3 cut(s) 288, 369, 764
DpnII GATC 3 cut(s) 286, 367, 762
Eam1104I CTCTTC 4 cut(s) 468, 868, 911, 1168
EarI CTCTTC 4 cut(s) 468, 868, 911, 1168
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 5 cut(s) 307, 480, 816, 1194, 1285
Eco24I GRGCYC 2 cut(s) 480, 598
Eco31I GGTCTC 2 cut(s) 318, 908
Eco47I GGWCC 1 cut(s) 449
Eco47III AGCGCT 1 cut(s) 1242
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 2 cut(s) 458, 678
EcoICRI GAGCTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 5 cut(s) 307, 480, 816, 1194, 1285
EcoT38I GRGCYC 2 cut(s) 480, 598
ErhI CCWWGG 5 cut(s) 307, 480, 816, 1194, 1285
FaeI CATG 6 cut(s) 287, 675, 714, 754, 820, 850
FalI AAGNNNNNCTT 2 cut(s) 1367, 1399
FaqI GGGAC 2 cut(s) 481, 1123
FatI CATG 6 cut(s) 283, 671, 710, 750, 816, 846
FauNDI CATATG 1 cut(s) 165
FbaI TGATCA 3 cut(s) 286, 367, 762
Fnu4HI GCNGC 8 cut(s) 24, 27, 554, 567, 837, 840, 1269, 1330
FokI GGATG 4 cut(s) 194, 639, 777, 985
FriOI GRGCYC 2 cut(s) 480, 598
Fsp4HI GCNGC 8 cut(s) 24, 27, 554, 567, 837, 840, 1269, 1330
FspBI CTAG 2 cut(s) 579, 980
FspI TGCGCA 1 cut(s) 1333
GlaI GCGC 3 cut(s) 197, 1242, 1333
GluI GCNGC 8 cut(s) 24, 27, 554, 567, 837, 840, 1269, 1330
HaeII RGCGCY 1 cut(s) 1244
HaeIII GGCC 2 cut(s) 389, 560
HapII CCGG 1 cut(s) 858
HgaI GACGC 2 cut(s) 483, 1396
HhaI GCGC 3 cut(s) 198, 1243, 1334
Hin1II CATG 6 cut(s) 287, 675, 714, 754, 820, 850
Hin6I GCGC 3 cut(s) 196, 1241, 1332
HinP1I GCGC 3 cut(s) 196, 1241, 1332
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 4 cut(s) 47, 221, 1058, 1367
HpaII CCGG 1 cut(s) 858
HphI GGTGA 3 cut(s) 365, 757, 1145
Hpy188I TCNGA 6 cut(s) 128, 472, 1057, 1210, 1366, 1374
Hpy188III TCNNGA 7 cut(s) 284, 401, 458, 760, 918, 980, 1108
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 8 cut(s) 34, 59, 166, 229, 379, 770, 1014, 1369
HpyCH4III ACNGT 6 cut(s) 74, 192, 700, 973, 1116, 1352
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 8 cut(s) 421, 569, 696, 704, 733, 1023, 1271, 1396
HpyF10VI GCNNNNNNNGC 5 cut(s) 433, 566, 575, 937, 1338
HpyF3I CTNAG 4 cut(s) 873, 1054, 1167, 1371
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 6 cut(s) 287, 675, 714, 754, 820, 850
HspAI GCGC 3 cut(s) 196, 1241, 1332
KpnI GGTACC 1 cut(s) 1099
Ksp22I TGATCA 3 cut(s) 286, 367, 762
KspI CCGCGG 1 cut(s) 840
Kzo9I GATC 3 cut(s) 286, 367, 762
LguI GCTCTTC 2 cut(s) 468, 868
LmnI GCTCC 1 cut(s) 433
Lsp1109I GCAGC 6 cut(s) 35, 38, 553, 565, 1255, 1316
LweI GCATC 3 cut(s) 617, 683, 1343
MaeI CTAG 2 cut(s) 579, 980
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 973
MalI GATC 3 cut(s) 288, 369, 764
MbiI CCGCTC 1 cut(s) 447
MboI GATC 3 cut(s) 286, 367, 762
MhlI GDGCHC 4 cut(s) 72, 480, 598, 1430
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 3 cut(s) 1086, 1168, 1237
MseI TTAA 2 cut(s) 99, 1178
MslI CAYNNNNRTG 2 cut(s) 709, 815
MspA1I CMGCKG 2 cut(s) 29, 839
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 1324
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 839
MwoI GCNNNNNNNGC 5 cut(s) 433, 566, 575, 937, 1338
NcoI CCATGG 1 cut(s) 816
NdeI CATATG 1 cut(s) 165
NdeII GATC 3 cut(s) 286, 367, 762
NlaIII CATG 6 cut(s) 287, 675, 714, 754, 820, 850
NlaIV GGNNCC 3 cut(s) 781, 892, 1097
NsbI TGCGCA 1 cut(s) 1333
NspI RCATGY 2 cut(s) 714, 754
PaeI GCATGC 1 cut(s) 714
PagI TCATGA 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 718
PciI ACATGT 1 cut(s) 750
PciSI GCTCTTC 2 cut(s) 468, 868
PctI GAATGC 1 cut(s) 1324
PfeI GAWTC 3 cut(s) 47, 1058, 1367
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 8 cut(s) 25, 28, 555, 568, 838, 841, 1270, 1331
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PscI ACATGT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 3 cut(s) 781, 892, 1097
PspPI GGNCC 1 cut(s) 449
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 508, 1097
RsaNI GTAC 2 cut(s) 507, 1096
RseI CAYNNNNRTG 2 cut(s) 709, 815
SacI GAGCTC 1 cut(s) 598
SacII CCGCGG 1 cut(s) 840
SapI GCTCTTC 2 cut(s) 468, 868
SaqAI TTAA 2 cut(s) 99, 1178
SatI GCNGC 8 cut(s) 24, 27, 554, 567, 837, 840, 1269, 1330
Sau3AI GATC 3 cut(s) 286, 367, 762
Sau96I GGNCC 1 cut(s) 449
ScaI AGTACT 1 cut(s) 508
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 4 cut(s) 72, 480, 598, 1430
SfaNI GCATC 3 cut(s) 617, 683, 1343
SfcI CTRYAG 2 cut(s) 188, 1236
Sfr303I CCGCGG 1 cut(s) 840
SgrBI CCGCGG 1 cut(s) 840
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 709, 815
SphI GCATGC 1 cut(s) 714
SsiI CCGC 4 cut(s) 447, 837, 839, 1406
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 579, 980
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 5 cut(s) 307, 480, 816, 1194, 1285
TaaI ACNGT 6 cut(s) 74, 192, 700, 973, 1116, 1352
TaiI ACGT 1 cut(s) 158
TaqI TCGA 6 cut(s) 267, 273, 598, 691, 866, 909
TatI WGTACW 1 cut(s) 506
TauI GCSGC 2 cut(s) 839, 842
TfiI GAWTC 3 cut(s) 47, 1058, 1367
Tru1I TTAA 2 cut(s) 99, 1178
Tru9I TTAA 2 cut(s) 99, 1178
TscAI CASTG 1 cut(s) 79
TseI GCWGC 6 cut(s) 23, 26, 553, 566, 1268, 1329
TspDTI ATGAA 7 cut(s) 105, 131, 185, 558, 632, 996, 1236
TspGWI ACGGA 2 cut(s) 446, 577
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 3 cut(s) 944, 1103, 1216
XbaI TCTAGA 1 cut(s) 979
XceI RCATGY 2 cut(s) 714, 754
XspI CTAG 2 cut(s) 579, 980
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.