MD09G1104300.v1.1

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013240
Physical Location & Seq
Reverse (-)
7622247 .. 7623063
817 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1104300.v1.1.491

Sequence Viewer

Length: 537 bp
ATGACGACTCTCAACGCTCTGCAGCATTTGTTTAAAGCTGCCAACGTTGATTCTCAAAGAATGTTACAGAAAACAGTCTGCTATGACAGATGGTTTTCGTGGACTATCATGGTGTCATGGGGTTACGCTGTTCAAGTATACGGAAACCATATTCTTCTGCCGGATGCCCTTCCCGTGCAAGAGACATTCAGCCAGTGGAAAAAGGGAAGTGTTTTAACAGGAGCTTATCTCTTTAACACAAGAGAACATCACAAGGATCCATGTCGAAGGCCTGTTGTTTTCTTTCTGGATGATGTGTCTTCTGGTGCGGGTAGAATCAAGAGCACCTACAAGAAGTCTTACGAAAATTGCTCCTACGACATGGCTTCTCCGAGGAGGTTGGAGGAGGTCAAAGTGTACTCACATAAGCTAGACTTTGATATGAAACAGGCGCCACGAAGACAATGTTGCGATGTATTACCTTCTTCGGGCAACAAGGTGATGGAAATCGAAATCAGAGAATGCAAAGAAGAAGAACTAATACACATGCATCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

179

Amino Acids

20.76

Weight (kDa)

8.49

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF604 PF04646 1 - 150 2.6e-45 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05280 AT1G05280
fragaria_vesca FvH4_6g43600
malus_domestica MD09G1104300.v1.1 MD17G1092000.v1.1
prunus_persica Prupe.3G221300_v2.0.a1
pyrus_communis pycom09g02750 pycom17g08910
rosa_chinensis RchiOBHm_Chr2g0160191
rosa_laevigata RLG00000021203
rosa_multiflora Rmu_sc0000403.1_g000007
rosa_roxburghii Rroxscaffold_2G00089970
rosa_rugosa Rorug02G0482300
rosa_samantha Rh2AG547700 Rh2BG560900 Rh2CG531500 Rh2DG569600
rosa_wichuraiana Rw2G045290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 308
AclI AACGTT 1 cut(s) 45
AclWI GGATC 2 cut(s) 251, 264
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 3 cut(s) 38, 224, 409
AluI AGCT 3 cut(s) 38, 224, 409
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 2 cut(s) 251, 264
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 22, 38
AspLEI GCGC 1 cut(s) 433
AsuHPI GGTGA 1 cut(s) 490
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 504, 536
BbsI GAAGAC 2 cut(s) 291, 445
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 2 cut(s) 25, 34
BccI CCATC 2 cut(s) 84, 475
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 2 cut(s) 23, 39
BlsI GCNGC 2 cut(s) 24, 40
BmiI GGNNCC 2 cut(s) 258, 432
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 291, 445
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BsaBI GATNNNNATC 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 3 cut(s) 169, 295, 529
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 388, 398
BseXI GCAGC 2 cut(s) 25, 34
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 258, 432
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 2 cut(s) 251, 264
BspT107I GGYRCC 1 cut(s) 430
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 1 cut(s) 256
BssNAI GTATAC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 431
BstF5I GGATG 3 cut(s) 169, 295, 529
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 25, 34
BstV2I GAAGAC 2 cut(s) 291, 445
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 465
BtsCI GGATG 3 cut(s) 169, 295, 529
BtsIMutI CAGTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 397
CviAII CATG 5 cut(s) 109, 117, 261, 361, 526
CviJI RGCY 6 cut(s) 38, 192, 224, 271, 365, 409
CviKI_1 RGCY 6 cut(s) 38, 192, 224, 271, 365, 409
CviQI GTAC 1 cut(s) 397
DinI GGCGCC 1 cut(s) 432
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 34
Eco147I AGGCCT 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 531
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
FaeI CATG 5 cut(s) 112, 120, 264, 364, 529
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 5 cut(s) 108, 116, 260, 360, 525
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 23, 39
FokI GGATG 3 cut(s) 176, 302, 516
Fsp4HI GCNGC 2 cut(s) 23, 39
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 432
GluI GCNGC 2 cut(s) 23, 39
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 161
HhaI GCGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 5 cut(s) 112, 120, 264, 364, 529
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HinfI GANTC 3 cut(s) 7, 50, 315
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 3 cut(s) 102, 139, 397
Hpy188I TCNGA 2 cut(s) 372, 497
Hpy188III TCNNGA 2 cut(s) 287, 319
Hpy8I GTNNAC 3 cut(s) 102, 139, 397
HpyAV CCTTC 3 cut(s) 179, 261, 471
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 22, 178, 504, 529
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 5 cut(s) 112, 120, 264, 364, 529
HspAI GCGC 1 cut(s) 431
KasI GGCGCC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 221, 356
LpnPI CCDG 7 cut(s) 174, 204, 206, 272, 285, 288, 413
Lsp1109I GCAGC 2 cut(s) 25, 34
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 63, 122
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 6 cut(s) 146, 291, 450, 456, 521, 524
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 4 cut(s) 366, 369, 376, 379
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 3 cut(s) 33, 215, 234
MspI CCGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 506
NarI GGCGCC 1 cut(s) 431
NdeII GATC 1 cut(s) 256
NlaIII CATG 5 cut(s) 112, 120, 264, 364, 529
NlaIV GGNNCC 2 cut(s) 258, 432
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 1 cut(s) 529
PceI AGGCCT 1 cut(s) 271
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 50, 315
PkrI GCNGC 2 cut(s) 24, 40
PluTI GGCGCC 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 258, 432
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 33, 215, 234
SatI GCNGC 2 cut(s) 23, 39
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 326
SetI ASST 9 cut(s) 40, 48, 226, 329, 380, 390, 411, 463, 480
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 20
SfoI GGCGCC 1 cut(s) 432
Sse9I AATT 1 cut(s) 346
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 1 cut(s) 308
SspDI GGCGCC 1 cut(s) 430
SspMI CTAG 1 cut(s) 410
StuI AGGCCT 1 cut(s) 271
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 265, 489
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 50, 315
Tru1I TTAA 3 cut(s) 33, 215, 234
Tru9I TTAA 3 cut(s) 33, 215, 234
TscAI CASTG 1 cut(s) 200
TseI GCWGC 2 cut(s) 22, 38
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 2 cut(s) 156, 522
TspRI CASTG 1 cut(s) 200
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.