Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010197

Physical Location & Seq

Genomic Coordinates Reverse (-)

11033534 .. 11034638

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTAAGCAAATCCATGGGTTCTCTATCCGCCACTACCTTGACCAAAACGTCTTCGTGGGATCTGCTCTAATTGACATGTATTCCAAATGTGGTGCAGTCACTTATGCTGAAAATGTTTTCGCTGGATCCCATGAGAAGAACACTGTCACATATACCACAATGATGCTGGGCTACGGTCAGAATGGAATGGGTGAGAGAGCTCTCTCTTTGTTTCACTCAATGCAGAAATCTGGCACTGCACCTGATGCCATAATCTTTGTTGCGGTCTTGTCTGCCTGCAGTTATGCTGGTTTGGTTAACGAAGGTCTTTCGATATACGATTCAATGAAAGGGGAATACAATATTAAACCACTAACGGCACACTATTGCTATATAGCTGACATGTTAGGGAGGGTTGGGAGAGTGGTTGAAGCCTACGAGTTTGTCAAAGGGTTGGGCGAAGAGGGTGATGCGATGGAAATTTGGGGCTCACTTCTTGGGGCGTGCAGAATTCATAAACATTTTGAATTGGGAAAGATTGTTGCTGGGAAATTGCTTGAACTAGAGGCAGCAAATGGCAAAACGGGCTACCATGTTTTGCTCTCAAATATGTATGCCGAGGAAGGCAAGTGGGAAAACGTGGATACTGTGAGGAAACAAATGAGGGAAAAGGGTTTGAGGAAGGAGACTGGATGTAGTTGGATTGATATTAGCGGTTTTTTGAACTGTTTCGCATCTCCTTTGCAGGATCATAACAAGAACTATCTATCCATGGAAAACTGCCCTTCATGTCAGCAGTTGTCTAAGTTATATTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

268

Amino Acids

29.64

Weight (kDa)

6.31

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	47 - 94	2.5e-10	PPR repeat family
PPR	PF01535	50 - 79	9.9e-09	PPR repeat
E_motif	PF20431	166 - 230	2.1e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22150 AT3G22150
fragaria_vesca	FvH4_5g30430 FvH4_5g30430
malus_domestica	MD09G1140900.v1.1 MD09G1141400.v1.1 MD09G1141900.v1.1
prunus_persica	Prupe.3G184500_v2.0.a1
pyrus_communis	pycom09g06220 pycom17g12210
rosa_chinensis	RchiOBHm_Chr2g0153281
rosa_laevigata	RLG00000020690
rosa_multiflora	Rmu_sc0000442.1_g000012 Rmu_sc0004856.1_g000015
rosa_roxburghii	Rroxscaffold_2G00095060
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh2AG500900 Rh2BG512400 Rh2CG487100 Rh2DG524100
rosa_wichuraiana	Rw2G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	31, 266, 696
AclWI	GGATC	4 cut(s)	70, 123, 136, 738
AcsI	RAATTY	2 cut(s)	462, 492
AflIII	ACRYGT	2 cut(s)	78, 384
AgsI	TTSAA	5 cut(s)	327, 413, 509, 542, 706
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	2 cut(s)	203, 380
AluI	AGCT	2 cut(s)	203, 380
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	4 cut(s)	70, 123, 136, 738
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	462, 492
Asp700I	GAANNNNTTC	1 cut(s)	710
AsuHPI	GGTGA	2 cut(s)	206, 461
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	205, 473
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
BmiI	GGNNCC	1 cut(s)	130
BmsI	GCATC	4 cut(s)	156, 238, 442, 725
BpiI	GAAGAC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	16, 600, 753
Bse1I	ACTGG	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	16, 600, 753
BseGI	GGATG	1 cut(s)	680
BseNI	ACTGG	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	563
BseYI	CCCAGC	2 cut(s)	169, 527
BsgI	GTGCAG	3 cut(s)	117, 225, 508
BsiHKAI	GWGCWC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	205, 473
Bsp143I	GATC	3 cut(s)	62, 128, 730
Bsp19I	CCATGG	2 cut(s)	16, 753
BspACI	CCGC	3 cut(s)	31, 266, 696
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	4 cut(s)	70, 123, 136, 738
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	3 cut(s)	16, 600, 753
BssMI	GATC	3 cut(s)	62, 128, 730
BssT1I	CCWWGG	2 cut(s)	16, 753
Bst4CI	ACNGT	4 cut(s)	148, 179, 631, 710
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	280, 487
BstDEI	CTNAG	1 cut(s)	786
BstDSI	CCRYGG	2 cut(s)	16, 753
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	3 cut(s)	65, 131, 733
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	3 cut(s)	62, 128, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 567
BstNSI	RCATGY	2 cut(s)	82, 388
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	563
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	62, 128
BstYI	RGATCY	2 cut(s)	62, 128
BsuI	GTATCC	1 cut(s)	619
BtgI	CCRYGG	2 cut(s)	16, 753
BtgZI	GCGATG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	680
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	144, 237
Cac8I	GCNNGC	2 cut(s)	280, 487
CviAII	CATG	7 cut(s)	17, 79, 134, 385, 575, 754, 771
CviJI	RGCY	6 cut(s)	174, 203, 380, 416, 471, 570
CviKI_1	RGCY	6 cut(s)	174, 203, 380, 416, 471, 570
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	3 cut(s)	64, 130, 732
DpnII	GATC	3 cut(s)	62, 128, 730
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	16, 753
Eco24I	GRGCYC	2 cut(s)	205, 473
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	492
EcoT14I	CCWWGG	2 cut(s)	16, 753
EcoT38I	GRGCYC	2 cut(s)	205, 473
ErhI	CCWWGG	2 cut(s)	16, 753
FaeI	CATG	7 cut(s)	20, 82, 137, 388, 578, 757, 774
FatI	CATG	7 cut(s)	16, 78, 133, 384, 574, 753, 770
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	687
FriOI	GRGCYC	2 cut(s)	205, 473
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	2 cut(s)	173, 531
Hin1II	CATG	7 cut(s)	20, 82, 137, 388, 578, 757, 774
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	323
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	206, 461
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	299, 599, 658, 777
HpyCH4III	ACNGT	4 cut(s)	148, 179, 631, 710
HpyCH4IV	ACGT	2 cut(s)	51, 621
HpyCH4V	TGCA	6 cut(s)	98, 226, 242, 282, 489, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 567
HpyF3I	CTNAG	1 cut(s)	786
HpySE526I	ACGT	2 cut(s)	51, 621
Hsp92II	CATG	7 cut(s)	20, 82, 137, 388, 578, 757, 774
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	62, 128, 730
LpnPI	CCDG	9 cut(s)	111, 155, 219, 258, 276, 292, 513, 657, 713
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	4 cut(s)	156, 238, 442, 725
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	51, 621
MaeIII	GTNAC	2 cut(s)	100, 148
MalI	GATC	3 cut(s)	64, 130, 732
MboI	GATC	3 cut(s)	62, 128, 730
MboII	GAAGA	3 cut(s)	46, 151, 455
MflI	RGATCY	2 cut(s)	62, 128
MhlI	GDGCHC	2 cut(s)	205, 473
MluCI	AATT	5 cut(s)	72, 462, 492, 509, 533
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	7 cut(s)	387, 439, 541, 595, 627, 639, 654
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	3 cut(s)	6, 300, 348
MslI	CAYNNNNRTG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	248, 567
NcoI	CCATGG	2 cut(s)	16, 753
NdeII	GATC	3 cut(s)	62, 128, 730
NlaIII	CATG	7 cut(s)	20, 82, 137, 388, 578, 757, 774
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	100, 148
NspI	RCATGY	2 cut(s)	82, 388
PciI	ACATGT	2 cut(s)	78, 384
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	553
PscI	ACATGT	2 cut(s)	78, 384
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	2 cut(s)	169, 527
PspN4I	GGNNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	62, 128
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	6, 300, 348
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	62, 128, 730
SduI	GDGCHC	2 cut(s)	205, 473
SetI	ASST	7 cut(s)	42, 54, 205, 247, 310, 382, 624
SfaNI	GCATC	4 cut(s)	156, 238, 442, 725
SfcI	CTRYAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	72, 462, 492, 509, 533
SsiI	CCGC	3 cut(s)	31, 266, 696
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	16, 753
TaaI	ACNGT	4 cut(s)	148, 179, 631, 710
TaiI	ACGT	2 cut(s)	54, 624
TaqI	TCGA	1 cut(s)	314
TasI	AATT	5 cut(s)	72, 462, 492, 509, 533
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	6, 300, 348
Tru9I	TTAA	3 cut(s)	6, 300, 348
TscAI	CASTG	2 cut(s)	151, 244
TseFI	GTSAC	2 cut(s)	100, 148
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	100, 148
TspDTI	ATGAA	3 cut(s)	344, 485, 759
TspRI	CASTG	2 cut(s)	151, 244
XapI	RAATTY	2 cut(s)	462, 492
XceI	RCATGY	2 cut(s)	82, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.