Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010197

Physical Location & Seq

Genomic Coordinates Reverse (-)

4588132 .. 4590713

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGAACAACTCACACACATCAATAGCCATGGCCTCCTCTGCTCTTCCTCTTCCTCTCTCCACACCCTCCCCCACCACTCAAACCACCACAGCCACCGCCCCGGACCACCTCTCCTCCCCAATCCTCCCCCTCGCAAAGCTCAAAACCCCCACCATCCGCTCCCGCCTCAGCAAACTCTGCCAGGAAGGCCAACCCCACCTTGCCCGCCAACTGTTCGACACTTTGCCTCGCCCCTCCTGCGTGCTCTGGAACACCATCATCATTGGATTCATCTGCAACAACATGCCCAATGAAGCCCTCTTGTTCTACTCCCAGATGAAATCCGCCTCTCCTGGCACCAAGGCCGACCCTTACACTTACTCTTCTACCCTCAAAGCCTGTGCCAACACGCGCAATTTCAAGATGGGTAAAGCCCTGCATTGCCATGTTCTTCGGTGTCTTCCGAACCCCAGCAGGATTGTGTGCAATTCGCTTTTGAATATGTACTCTGCTTGTTATAATGACTTTGATTATTCACAGTATGATTTAGTGCGTAGGGTGTTTGATACGATGCGCAAGAGAAATGTGGTTGCTTGGAATACGCTGGTTTCGTGGTATGTTAAGACAGAAAGATATGCAGAAGCAGTGAAGCAGTTTAGGATGATGATGGGAATGAGAATAACACCGAGTGCTGTCAGTTTTGTCAATGTTTTCCCTGCGCTTTCCGCTATGGGAGACTATAAGAACGCGAATGTTCTACACAGTATGCTTCTTAGGTTGGGTGGGGAATATGTGACTGACTTGTTTGTTGTGAGCTCGGCAATATTTATGTATGCCGAGCTTGGTTGCCTTGAATATGCTAGGAAGATTTTTGACCATTGTTCGGAGAGAAATACAGAGATTTGGAACACTATGATCGGTGCATATGTTCAAAATAACCATCCTATTGAAGCGATCGACCTCTTCTTTCAAGCTGTAAACTCAGAACTGGCTATTCTTGATGAGGTGACTTTCCTATCAGTTTTAACTGCATGTTCACAGATGCAACAGTTGGAATTAGCTCGACAGCTGCATGCTTTTATCATCAAGCATTTGAGATTGATGCCCGTTATTTTACTCAATGCGACTATCGTAATGTATTCAAGGTGCAATTCTGTTGACATGTCATTCAAAATTTTTCATAAGATGCCCGAGAGGGATGTTGTTTCATGGAATACTATGATTTCTGCATTTGTGCAAAATGGTTTAGATGATGAAGCTTTGATGCTTTTTTATGAGATGCAAAAGCAAAGGTTCATGATTGATTCAGTAACTGTAACTGCTCTACTTTCGGCTTCATCAAATCTTAGAAATCCAGATATTGGAAAGCAGACTCATGCTTATCTTATTAGGCATGACATACAATTTGAGGGGATGGACAGTTATCTCATTGACATGTATGCTAAATCTGGTTCAGTAAGGATCGCAGAACGGGTTTTCAAAAAAGACTACAGCTGTGATAGAGATCAGGCTACTTGGAATTCTATGATTGCTGGGTACACACAGAATGGGATATCTGAAGAAGCTTTCTTTGTCTTTAGGCAGATGCTTGAGCAAAATCTAATACCAAATGCTGTGACCTTAGCATCGGTTCTCCCAGCTTGTAATCCAGTGGGAAACATAGATATGGGTAAGCAACTCCATGGGTTCTCTATCCGCCACTACCTTGACCAAAATGTCTTCGTGGGATCTGCTCTAATTGACATGTATTCCAAATGTGGTGCAGTCACTAATGCTGAAAATGTTTTCGCCGGATCCCATGAGAAGAACTCTGTCACATATACCACAATGATACTGGGCTACGGTCAGCATGGAATGGGTGAGAGAGCTCTCTCTTTGTTTCACTCAATGCAGAAATCTGGCATTGCACCTGATGCCATAACCTTTGTTGCAGTCTTGTCTGCCTGCAGTTATGCTGGTTTGGTTAACGAAGGTCTTTCGATATATGATTCAATGAAAAGGGAATACAATATTAAACCACTAACGGCACACTATTGCTGTATAGCAGACATGTTAGGGAGGGTTGGGAGAGTGGTTGAAGCCTACGAGTTTGTCAAAGGGTTGGGTGAAGAGGGTGCTGTGATGGAAATTTGGGGCTCACTTCTTGGGGCGTGCAGAATTCATAAACATTTTGAATTGGGAAAGATTGTTGCTGGGAAATTGCTTGAACTAGAGGCAGCAAATGGCAAAACGGGCTACCATGTTTTGCTCTCAAATATGTATGCCGAGGAAGGCAAGTGGGAAAACGTGGATAATGTGAGGAAACAAATAAGGGAAAAAGGTTTGAGGAAGGAGACTGGATGTAGTTGGATTGATATTAGCGGTTTTTTGAACTGTTTCACATCCAGGGACCAAAACCATCCTCAGGGTGATGAGATATATGATATATTGGAGGAATTGACTGTGAAGATGAAAGATACTGGTTATAGGCCTTCTCTCAATTCTTCCTTAGATGCAATCTTGGAACCTTATGACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

833

Amino Acids

93.5

Weight (kDa)

6.76

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	78 - 129	3.1e-07	PPR repeat family
PPR_2	PF13041	187 - 233	1.1e-06	PPR repeat family
PPR_2	PF13041	392 - 438	1.4e-10	PPR repeat family
PPR	PF01535	395 - 423	2.3e-08	PPR repeat
PPR_2	PF13041	495 - 541	3.1e-08	PPR repeat family
PPR	PF01535	498 - 526	2.4e-06	PPR repeat
PPR_2	PF13041	595 - 642	6.5e-13	PPR repeat family
PPR	PF01535	598 - 628	7.4e-09	PPR repeat
E_motif	PF20431	714 - 778	2e-15	E motif
Eplus_motif	PF20430	786 - 810	3.2e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22150 AT3G22150
fragaria_vesca	FvH4_5g30430 FvH4_5g30430
malus_domestica	MD09G1140900.v1.1 MD09G1141400.v1.1 MD09G1141900.v1.1
prunus_persica	Prupe.3G184500_v2.0.a1
pyrus_communis	pycom09g06220 pycom17g12210
rosa_chinensis	RchiOBHm_Chr2g0153281
rosa_laevigata	RLG00000020690
rosa_multiflora	Rmu_sc0000442.1_g000012 Rmu_sc0004856.1_g000015
rosa_roxburghii	Rroxscaffold_2G00095060
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh2AG500900 Rh2BG512400 Rh2CG487100 Rh2DG524100
rosa_wichuraiana	Rw2G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AasI	GACNNNNNNGTC	1 cut(s)	1694
Acc16I	TGCGCA	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	1340
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	2 cut(s)	391, 728
AciI	CCGC	8 cut(s)	96, 157, 163, 205, 324, 705, 1675, 2340
AclWI	GGATC	4 cut(s)	1448, 1714, 1767, 1780
AcsI	RAATTY	4 cut(s)	1152, 1498, 2106, 2136
AcuI	CTGAAG	1 cut(s)	1557
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	485, 1517
AfiI	CCNNNNNNNGG	3 cut(s)	862, 1340, 2383
AflIII	ACRYGT	4 cut(s)	1140, 1413, 1722, 2028
AjnI	CCWGG	3 cut(s)	180, 331, 2363
Alw21I	GWGCWC	3 cut(s)	246, 797, 1849
Alw26I	GTCTC	2 cut(s)	708, 2306
AlwI	GGATC	4 cut(s)	1448, 1714, 1767, 1780
AlwNI	CAGNNNCTG	1 cut(s)	1292
Ama87I	CYCGRG	1 cut(s)	1169
AoxI	GGCC	4 cut(s)	30, 187, 342, 2447
ApeKI	GCWGC	2 cut(s)	1048, 2195
ApoI	RAATTY	4 cut(s)	1152, 1498, 2106, 2136
ArsI	GACNNNNNNTTYG	2 cut(s)	1367, 1399
Asp700I	GAANNNNTTC	1 cut(s)	2354
AspLEI	GCGC	3 cut(s)	393, 555, 700
AspS9I	GGNCC	2 cut(s)	103, 2368
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	997, 1850, 2096, 2399
AvaI	CYCGRG	1 cut(s)	1169
AvaII	GGWCC	2 cut(s)	103, 2368
AxyI	CCTNAGG	1 cut(s)	2382
BamHI	GGATCC	1 cut(s)	1772
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	3 cut(s)	797, 1849, 2117
BbsI	GAAGAC	2 cut(s)	431, 1690
Bbv12I	GWGCWC	3 cut(s)	246, 797, 1849
BbvCI	CCTCAGC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	1035, 2207
BccI	CCATC	8 cut(s)	161, 263, 397, 640, 927, 1387, 2095, 2385
BceAI	ACGGC	1 cut(s)	2019
BciT130I	CCWGG	3 cut(s)	182, 333, 2365
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	708, 2306
BfaI	CTAG	2 cut(s)	840, 2189
BfmI	CTRYAG	2 cut(s)	1468, 1924
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	2 cut(s)	1049, 2196
BlsI	GCNGC	2 cut(s)	1050, 2197
Bme1390I	CCNGG	4 cut(s)	101, 182, 333, 2365
Bme18I	GGWCC	2 cut(s)	103, 2368
BmeT110I	CYCGRG	1 cut(s)	1169
BmgT120I	GGNCC	2 cut(s)	103, 2368
BmiI	GGNNCC	4 cut(s)	337, 1774, 2369, 2484
BmrFI	CCNGG	4 cut(s)	101, 182, 333, 2365
BmrI	ACTGGG	1 cut(s)	1823
BmuI	ACTGGG	1 cut(s)	1823
BpiI	GAAGAC	2 cut(s)	431, 1690
BplI	GAGNNNNNCTC	2 cut(s)	1772, 1804
Bpu10I	CCTNAGC	2 cut(s)	167, 1600
BpuEI	CTTGAG	1 cut(s)	1589
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	1482
BsaJI	CCNNGG	6 cut(s)	27, 99, 339, 1660, 2244, 2364
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 98, 125, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	862, 1340, 2383
Bse1I	ACTGG	5 cut(s)	972, 1628, 1818, 2320, 2443
Bse21I	CCTNAGG	1 cut(s)	2382
Bse3DI	GCAATG	2 cut(s)	418, 1881
Bse8I	GATNNNNATC	1 cut(s)	1482
BseBI	CCWGG	3 cut(s)	182, 333, 2365
BseDI	CCNNGG	6 cut(s)	27, 99, 339, 1660, 2244, 2364
BseGI	GGATG	8 cut(s)	153, 645, 919, 1183, 1398, 2324, 2360, 2377
BseJI	GATNNNNATC	1 cut(s)	1482
BseLI	CCNNNNNNNGG	3 cut(s)	862, 1340, 2383
BseMI	GCAATG	2 cut(s)	418, 1881
BseMII	CTCAG	3 cut(s)	181, 975, 2396
BseNI	ACTGG	5 cut(s)	972, 1628, 1818, 2320, 2443
BseRI	GAGGAG	2 cut(s)	25, 103
BseXI	GCAGC	2 cut(s)	1035, 2207
BseYI	CCCAGC	4 cut(s)	449, 1511, 1615, 2171
BsgI	GTGCAG	2 cut(s)	1761, 2152
Bsh1236I	CGCG	2 cut(s)	391, 728
Bsh1285I	CGRYCG	1 cut(s)	936
BshFI	GGCC	4 cut(s)	32, 189, 344, 2449
BshNI	GGYRCC	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	936
BsiHKAI	GWGCWC	3 cut(s)	246, 797, 1849
BsiHKCI	CYCGRG	1 cut(s)	1169
BsiSI	CCGG	2 cut(s)	101, 1770
BslFI	GGGAC	1 cut(s)	2381
BslI	CCNNNNNNNGG	3 cut(s)	862, 1340, 2383
BsmAI	GTCTC	2 cut(s)	708, 2306
BsmFI	GGGAC	1 cut(s)	2381
BsnI	GGCC	4 cut(s)	32, 189, 344, 2449
BsoBI	CYCGRG	1 cut(s)	1169
Bsp1286I	GDGCHC	4 cut(s)	246, 797, 1849, 2117
Bsp143I	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
Bsp19I	CCATGG	2 cut(s)	27, 1660
BspACI	CCGC	8 cut(s)	96, 157, 163, 205, 324, 705, 1675, 2340
BspANI	GGCC	4 cut(s)	32, 189, 344, 2449
BspCNI	CTCAG	3 cut(s)	180, 974, 2395
BspFNI	CGCG	2 cut(s)	391, 728
BspHI	TCATGA	1 cut(s)	1275
BspLI	GGNNCC	4 cut(s)	337, 1774, 2369, 2484
BspMAI	CTGCAG	1 cut(s)	1928
BspPI	GGATC	4 cut(s)	1448, 1714, 1767, 1780
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	418, 1881
BsrI	ACTGG	5 cut(s)	972, 1628, 1818, 2320, 2443
BssECI	CCNNGG	6 cut(s)	27, 99, 339, 1660, 2244, 2364
BssMI	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
BssT1I	CCWWGG	3 cut(s)	27, 339, 1660
Bst2UI	CCWGG	3 cut(s)	182, 333, 2365
Bst4CI	ACNGT	9 cut(s)	213, 519, 743, 1029, 1294, 1400, 1823, 2354, 2422
Bst6I	CTCTTC	5 cut(s)	48, 54, 367, 947, 2082
BstAPI	GCANNNNNTGC	2 cut(s)	177, 1892
BstC8I	GCNNGC	5 cut(s)	205, 242, 1053, 1924, 2131
BstDEI	CTNAG	7 cut(s)	167, 752, 961, 1325, 1600, 2382, 2467
BstDSI	CCRYGG	2 cut(s)	27, 1660
BstF5I	GGATG	8 cut(s)	153, 645, 919, 1183, 1398, 2324, 2360, 2377
BstFNI	CGCG	2 cut(s)	391, 728
BstHHI	GCGC	3 cut(s)	393, 555, 700
BstKTI	GATC	6 cut(s)	897, 936, 1443, 1486, 1709, 1775
BstMAI	GTCTC	2 cut(s)	708, 2306
BstMBI	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
BstMCI	CGRYCG	1 cut(s)	936
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 177, 186, 237, 704, 1892, 2211
BstNI	CCWGG	3 cut(s)	182, 333, 2365
BstNSI	RCATGY	7 cut(s)	286, 1014, 1055, 1144, 1417, 1726, 2032
BstSCI	CCNGG	4 cut(s)	99, 180, 331, 2363
BstSFI	CTRYAG	2 cut(s)	1468, 1924
BstUI	CGCG	2 cut(s)	391, 728
BstV1I	GCAGC	2 cut(s)	1035, 2207
BstV2I	GAAGAC	2 cut(s)	431, 1690
BstX2I	RGATCY	2 cut(s)	1706, 1772
BstYI	RGATCY	2 cut(s)	1706, 1772
Bsu36I	CCTNAGG	1 cut(s)	2382
BsuRI	GGCC	4 cut(s)	32, 189, 344, 2449
BtgI	CCRYGG	2 cut(s)	27, 1660
BtsCI	GGATG	8 cut(s)	153, 645, 919, 1183, 1398, 2324, 2360, 2377
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	630, 1635
Cac8I	GCNNGC	5 cut(s)	205, 242, 1053, 1924, 2131
CaiI	CAGNNNCTG	1 cut(s)	1292
CciI	TCATGA	1 cut(s)	1275
CfoI	GCGC	3 cut(s)	393, 555, 700
Cfr13I	GGNCC	2 cut(s)	103, 2368
Csp6I	GTAC	2 cut(s)	484, 1516
CviQI	GTAC	2 cut(s)	484, 1516
DdeI	CTNAG	7 cut(s)	167, 752, 961, 1325, 1600, 2382, 2467
DpnI	GATC	6 cut(s)	896, 935, 1442, 1485, 1708, 1774
DpnII	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
DraIII	CACNNNGTG	1 cut(s)	668
DrdI	GACNNNNNNGTC	1 cut(s)	1694
DseDI	GACNNNNNNGTC	1 cut(s)	1694
Eam1104I	CTCTTC	5 cut(s)	48, 54, 367, 947, 2082
EarI	CTCTTC	5 cut(s)	48, 54, 367, 947, 2082
EciI	GGCGGA	2 cut(s)	313, 1664
Ecl136II	GAGCTC	2 cut(s)	795, 1847
Eco130I	CCWWGG	3 cut(s)	27, 339, 1660
Eco147I	AGGCCT	1 cut(s)	2449
Eco24I	GRGCYC	3 cut(s)	797, 1849, 2117
Eco32I	GATATC	1 cut(s)	1533
Eco47I	GGWCC	2 cut(s)	103, 2368
Eco53kI	GAGCTC	2 cut(s)	795, 1847
Eco57I	CTGAAG	1 cut(s)	1557
Eco81I	CCTNAGG	1 cut(s)	2382
Eco88I	CYCGRG	1 cut(s)	1169
EcoICRI	GAGCTC	2 cut(s)	795, 1847
EcoRI	GAATTC	2 cut(s)	1498, 2136
EcoRII	CCWGG	3 cut(s)	180, 331, 2363
EcoRV	GATATC	1 cut(s)	1533
EcoT14I	CCWWGG	3 cut(s)	27, 339, 1660
EcoT38I	GRGCYC	3 cut(s)	797, 1849, 2117
ErhI	CCWWGG	3 cut(s)	27, 339, 1660
FaqI	GGGAC	1 cut(s)	2381
FauI	CCCGC	2 cut(s)	170, 212
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	2 cut(s)	1049, 2196
FokI	GGATG	8 cut(s)	140, 652, 906, 1190, 1405, 2331, 2347, 2364
FriOI	GRGCYC	3 cut(s)	797, 1849, 2117
Fsp4HI	GCNGC	2 cut(s)	1049, 2196
FspBI	CTAG	2 cut(s)	840, 2189
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	3 cut(s)	392, 554, 699
GluI	GCNGC	2 cut(s)	1049, 2196
GsaI	CCCAGC	4 cut(s)	453, 1515, 1619, 2175
HaeIII	GGCC	4 cut(s)	32, 189, 344, 2449
HapII	CCGG	2 cut(s)	101, 1770
HhaI	GCGC	3 cut(s)	393, 555, 700
Hin6I	GCGC	3 cut(s)	391, 553, 698
HinP1I	GCGC	3 cut(s)	391, 553, 698
HincII	GTYRAC	2 cut(s)	1138, 1945
HindII	GTYRAC	2 cut(s)	1138, 1945
HindIII	AAGCTT	2 cut(s)	1236, 1542
HinfI	GANTC	4 cut(s)	267, 1283, 1351, 1967
HpaI	GTTAAC	1 cut(s)	1945
HpaII	CCGG	2 cut(s)	101, 1770
HphI	GGTGA	4 cut(s)	997, 1850, 2096, 2399
Hpy166II	GTNNAC	5 cut(s)	958, 1016, 1138, 1518, 1945
Hpy188I	TCNGA	4 cut(s)	444, 865, 964, 1537
Hpy188III	TCNNGA	5 cut(s)	247, 400, 977, 1276, 1334
Hpy8I	GTNNAC	5 cut(s)	958, 1016, 1138, 1518, 1945
HpyAV	CCTTC	5 cut(s)	179, 1943, 2243, 2302, 2460
HpyCH4III	ACNGT	9 cut(s)	213, 519, 743, 1029, 1294, 1400, 1823, 2354, 2422
HpyCH4IV	ACGT	1 cut(s)	2265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 177, 186, 237, 704, 1892, 2211
HpyF3I	CTNAG	7 cut(s)	167, 752, 961, 1325, 1600, 2382, 2467
HpySE526I	ACGT	1 cut(s)	2265
HspAI	GCGC	3 cut(s)	391, 553, 698
KspAI	GTTAAC	1 cut(s)	1945
Kzo9I	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	2 cut(s)	1035, 2207
MaeI	CTAG	2 cut(s)	840, 2189
MaeII	ACGT	1 cut(s)	2265
MaeIII	GTNAC	7 cut(s)	772, 985, 1288, 1294, 1594, 1744, 1792
MalI	GATC	6 cut(s)	896, 935, 1442, 1485, 1708, 1774
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
MflI	RGATCY	2 cut(s)	1706, 1772
MhlI	GDGCHC	4 cut(s)	246, 797, 1849, 2117
MlyI	GAGTC	1 cut(s)	1345
MmeI	TCCRAC	2 cut(s)	1011, 2306
MroXI	GAANNNNTTC	1 cut(s)	2354
MseI	TTAA	4 cut(s)	600, 1004, 1944, 1992
MslI	CAYNNNNRTG	3 cut(s)	423, 1412, 1643
MspA1I	CMGCKG	2 cut(s)	1048, 1473
MspI	CCGG	2 cut(s)	101, 1770
MspR9I	CCNGG	4 cut(s)	101, 182, 333, 2365
MvaI	CCWGG	3 cut(s)	182, 333, 2365
MvnI	CGCG	2 cut(s)	391, 728
MwoI	GCNNNNNNNGC	7 cut(s)	38, 177, 186, 237, 704, 1892, 2211
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	2 cut(s)	27, 1660
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
NlaIV	GGNNCC	4 cut(s)	337, 1774, 2369, 2484
NmeAIII	GCCGAG	3 cut(s)	776, 841, 2269
NmuCI	GTSAC	5 cut(s)	772, 985, 1594, 1744, 1792
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	7 cut(s)	286, 1014, 1055, 1144, 1417, 1726, 2032
PaeI	GCATGC	1 cut(s)	1055
PagI	TCATGA	1 cut(s)	1275
PceI	AGGCCT	1 cut(s)	2449
PciI	ACATGT	4 cut(s)	1140, 1413, 1722, 2028
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	2354
PfeI	GAWTC	3 cut(s)	267, 1283, 1967
PflMI	CCANNNNNTGG	1 cut(s)	1340
PkrI	GCNGC	2 cut(s)	1050, 2197
Ple19I	CGATCG	1 cut(s)	936
PleI	GAGTC	1 cut(s)	1345
PpsI	GAGTC	1 cut(s)	1345
PscI	ACATGT	4 cut(s)	1140, 1413, 1722, 2028
PsiI	TTATAA	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	797, 1849
Psp6I	CCWGG	3 cut(s)	180, 331, 2363
PspFI	CCCAGC	4 cut(s)	449, 1511, 1615, 2171
PspGI	CCWGG	3 cut(s)	180, 331, 2363
PspN4I	GGNNCC	4 cut(s)	337, 1774, 2369, 2484
PspPI	GGNCC	2 cut(s)	103, 2368
PstI	CTGCAG	1 cut(s)	1928
PstNI	CAGNNNCTG	1 cut(s)	1292
PsuI	RGATCY	2 cut(s)	1706, 1772
PvuI	CGATCG	1 cut(s)	936
PvuII	CAGCTG	2 cut(s)	1048, 1473
RsaI	GTAC	2 cut(s)	485, 1517
RsaNI	GTAC	2 cut(s)	484, 1516
RseI	CAYNNNNRTG	3 cut(s)	423, 1412, 1643
SacI	GAGCTC	2 cut(s)	797, 1849
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	600, 1004, 1944, 1992
SatI	GCNGC	2 cut(s)	1049, 2196
Sau3AI	GATC	6 cut(s)	894, 933, 1440, 1483, 1706, 1772
Sau96I	GGNCC	2 cut(s)	103, 2368
SchI	GAGTC	1 cut(s)	1345
ScrFI	CCNGG	4 cut(s)	101, 182, 333, 2365
SduI	GDGCHC	4 cut(s)	246, 797, 1849, 2117
SfcI	CTRYAG	2 cut(s)	1468, 1924
SinI	GGWCC	2 cut(s)	103, 2368
SmiMI	CAYNNNNRTG	3 cut(s)	423, 1412, 1643
SmlI	CTYRAG	1 cut(s)	1568
SmoI	CTYRAG	1 cut(s)	1568
SphI	GCATGC	1 cut(s)	1055
SseBI	AGGCCT	1 cut(s)	2449
SsiI	CCGC	8 cut(s)	96, 157, 163, 205, 324, 705, 1675, 2340
SspI	AATATT	2 cut(s)	804, 1990
SspMI	CTAG	2 cut(s)	840, 2189
SstI	GAGCTC	2 cut(s)	797, 1849
StuI	AGGCCT	1 cut(s)	2449
StyD4I	CCNGG	4 cut(s)	99, 180, 331, 2363
StyI	CCWWGG	3 cut(s)	27, 339, 1660
TaaI	ACNGT	9 cut(s)	213, 519, 743, 1029, 1294, 1400, 1823, 2354, 2422
TaiI	ACGT	1 cut(s)	2268
TaqI	TCGA	4 cut(s)	216, 936, 1042, 1958
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	3 cut(s)	267, 1283, 1967
Tru1I	TTAA	4 cut(s)	600, 1004, 1944, 1992
Tru9I	TTAA	4 cut(s)	600, 1004, 1944, 1992
TscAI	CASTG	2 cut(s)	630, 1635
TseFI	GTSAC	5 cut(s)	772, 985, 1594, 1744, 1792
TseI	GCWGC	2 cut(s)	1048, 2195
Tsp45I	GTSAC	5 cut(s)	772, 985, 1594, 1744, 1792
TspRI	CASTG	2 cut(s)	630, 1635
Van91I	CCANNNNNTGG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	103, 2368
XapI	RAATTY	4 cut(s)	1152, 1498, 2106, 2136
XceI	RCATGY	7 cut(s)	286, 1014, 1055, 1144, 1417, 1726, 2032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1810
XmnI	GAANNNNTTC	1 cut(s)	2354
XspI	CTAG	2 cut(s)	840, 2189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.