Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000442.1

Orthogroup ID

OG0010197

Physical Location & Seq

Genomic Coordinates Forward (+)

34022 .. 36478

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000442.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

atggcttcctctgctcttcccccacctctctccacgcccactcaaacccccatacccaactctcctcacaatctctcttccccaaacttcccactgccaactctcgaaaccgccacaattcgctcccgcctaagcaggctctgccaagaaggccaaccccaccttgcccgccaactgttcgacactttgcctcgcccaactacccttctctggaacaccatcatcattggcttcatctgcaacaacatgcccactgaagccctcttgttctattcccacatgaaaaactcctcccccagcaccaaatgtgacccttacagttactcttccaccctcaaagcctgcgccgatacccgcaatttcaacattggcaaggctgtgcattgtcacattcttcggtgccttccgaacccaagtatgattgtgcagaattcgctaatgaatatgtactcttcctgctttggaagctttgatcatgccaagtatgacttagtacgcaaggtgtttgacacaatgcgcgagagaaatgtggttgcgtggaacacgttggtttcgtggtatgttaagactgagaggtatcgaggagcggttaagcagtttaggatgatgatgaggatgagaatagccccaagtgctgtgagttttgtcaatgttttccctgctttatccgccgtgagagactataaaaatgccaatgttttatatggtttggttgttagatttggcggtgagtatgtgaatgacttgtttgttgtgagctcggcgatatttatgtatgctgagcttggttgccttgattatgctaggaagattttcgaccgttgtttggggagaaacacagagatatggaacaccatgattggtgcgtatgttcagaataatcttcctagggaagcaatcagccttttctttcaagccatacgatcagatcaggctgttcttgatgaagtgacttttctttcggttttaactgcatgttcacagttgcaacagttggaactagctggacagttgcatgcttttattactaagcatttcagagtgatgcctgttattttactaaatgcaattatggtgatgtactcgaggtgcaattctattgagacgtcatttaagttttttcataagatgccggagagggatgctgtttcatggaataccatgatctctgtgttttctcagagtggcttggatgatgaggctttaatgcttgtttatgagatgcaaaaacaaaactttttgattgattctgtaactgtaactgctctactttcagctgcatcaaatcttagaaatatagatgttggacagcagacacatgcttatattattaggcatggaatagaatttgagggaatggaaagttatctcatagacatgtatgccaaatctggttcagtcaggattgcagaacgacttttcaaaaagaactatattgttgatagagatcatgctacttggaattctatggttactgggtacacacagaatggcatgattgaagaagcttttgtagtttttaggaaaatgctggagcagaagctaataccaaatgctgtgaccttagcatcaattttccctgcttgcaatccagtggggaacatagatatgggtaagcaactccatgggttctcttttcgtcactaccttgaccgagacgtcttcatgggaactgctctaattgacatgtactcaaaatgtggtgcactaacttatgctgaaaatgtgttttttgaaacccatgaaaagaattctgtcacatacaccacaatgatattgggctatggccaacatggaatgggtcagaaagctgtgtctttgtttcactcaatgaagagatctggcattgtacctgatgcagttacctttgttgctgtcttggctgcttgcagttatgctggtttggttgatgaaggtctttctttatatgattcaatgaaaatggagtacaacataaaatcattaactgcacattattgttgtatagcggacatgttagggagggttggaaaagtagttgaagcatacgagtttgttatagggttgggtgaagagggttacgtgatagaaatttggggatcacttcttggtgcatgcagaattcataaacaatttgaattgggcaagattgttgctgataaattgcttgaaataaaggctgctaatgtcaagacaggctaccatgttttgctctcaaatatgtatgctgaggaaggaaagtgggaaattgttgataaagtgagaaaacaaatgaaagagaaaggtttgaagaaggagcctggctgtagttggattgagattactggtatcctaaattgtttcatttctagggaccaaaagcaccctcggtgcagtgagatatatggtatgttggcggagttgactatgatgatgaaagaagctggttataggccttctcttaatttccatctagatgcaattttggaacctcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

818

Amino Acids

92.47

Weight (kDa)

8.23

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22150 AT3G22150
fragaria_vesca	FvH4_5g30430 FvH4_5g30430
malus_domestica	MD09G1140900.v1.1 MD09G1141400.v1.1 MD09G1141900.v1.1
prunus_persica	Prupe.3G184500_v2.0.a1
pyrus_communis	pycom09g06220 pycom17g12210
rosa_chinensis	RchiOBHm_Chr2g0153281
rosa_laevigata	RLG00000020690
rosa_multiflora	Rmu_sc0000442.1_g000012 Rmu_sc0004856.1_g000015
rosa_roxburghii	Rroxscaffold_2G00095060
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh2AG500900 Rh2BG512400 Rh2CG487100 Rh2DG524100
rosa_wichuraiana	Rw2G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1658
AatII	GACGTC	2 cut(s)	1109, 1662
AccB1I	GGYRCC	1 cut(s)	399
AccBSI	CCGCTC	1 cut(s)	587
AccII	CGCG	1 cut(s)	519
AciI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
AclWI	GGATC	1 cut(s)	2086
AcoI	YGGCCR	1 cut(s)	1786
AcsI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	1106, 1659
AfaI	GTAC	7 cut(s)	449, 495, 1082, 1481, 1691, 1851, 1949
AfiI	CCNNNNNNNGG	2 cut(s)	210, 826
AflIII	ACRYGT	4 cut(s)	543, 1377, 1686, 1992
AjnI	CCWGG	1 cut(s)	2278
AluBI	AGCT	9 cut(s)	468, 759, 784, 1004, 1277, 1508, 1543, 1811, 2402
AluI	AGCT	9 cut(s)	468, 759, 784, 1004, 1277, 1508, 1543, 1811, 2402
Alw21I	GWGCWC	2 cut(s)	761, 1708
Alw26I	GTCTC	3 cut(s)	672, 1097, 1650
Alw44I	GTGCAC	1 cut(s)	1704
AlwI	GGATC	1 cut(s)	2086
AlwNI	CAGNNNCTG	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	3 cut(s)	151, 1786, 2411
ApaLI	GTGCAC	1 cut(s)	1704
ApeKI	GCWGC	3 cut(s)	1277, 1883, 2159
ApoI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
ArsI	GACNNNNNNTTYG	2 cut(s)	943, 975
Asp700I	GAANNNNTTC	1 cut(s)	812
AspA2I	CCTAGG	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	347, 519
AspS9I	GGNCC	1 cut(s)	2332
AsuHPI	GGTGA	3 cut(s)	740, 1087, 2060
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	1 cut(s)	2332
AvrII	CCTAGG	1 cut(s)	887
BaeGI	GKGCMC	1 cut(s)	1708
BalI	TGGCCA	1 cut(s)	1788
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	1654
Bbv12I	GWGCWC	2 cut(s)	761, 1708
BbvCI	CCTCAGC	1 cut(s)	2208
BbvI	GCAGC	3 cut(s)	1264, 1870, 2146
BccI	CCATC	2 cut(s)	227, 2436
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	1 cut(s)	2280
BciVI	GTATCC	1 cut(s)	2318
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	672, 1097, 1650
BfaI	CTAG	5 cut(s)	804, 888, 1001, 2328, 2432
BfmI	CTRYAG	1 cut(s)	2284
BfuI	GTATCC	1 cut(s)	2318
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	1838
BisI	GCNGC	3 cut(s)	1278, 1884, 2160
BlnI	CCTAGG	1 cut(s)	887
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	3 cut(s)	1279, 1885, 2161
Bme1390I	CCNGG	1 cut(s)	2280
Bme18I	GGWCC	1 cut(s)	2332
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	1 cut(s)	2332
BmiI	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
BmrFI	CCNGG	1 cut(s)	2280
BmrI	ACTGGG	1 cut(s)	1485
BmsI	GCATC	8 cut(s)	1035, 1119, 1132, 1212, 1289, 1577, 1846, 2425
BmuI	ACTGGG	1 cut(s)	1485
BpiI	GAAGAC	1 cut(s)	1654
BpmI	CTGGAG	1 cut(s)	1553
Bpu10I	CCTNAGC	3 cut(s)	131, 1564, 2208
Bpu1102I	GCTNAGC	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	2062
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaHI	GRCGYC	2 cut(s)	1106, 1659
BsaJI	CCNNGG	3 cut(s)	887, 1624, 2345
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 826
Bse1I	ACTGG	3 cut(s)	1480, 1592, 2308
Bse8I	GATNNNNATC	1 cut(s)	1446
BseBI	CCWGG	1 cut(s)	2280
BseDI	CCNNGG	3 cut(s)	887, 1624, 2345
BseGI	GGATG	4 cut(s)	609, 621, 1147, 1198
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	2 cut(s)	210, 826
BseMII	CTCAG	4 cut(s)	561, 771, 1193, 2199
BseNI	ACTGG	3 cut(s)	1480, 1592, 2308
BseRI	GAGGAG	3 cut(s)	54, 280, 597
BseSI	GKGCMC	1 cut(s)	1708
BseXI	GCAGC	3 cut(s)	1264, 1870, 2146
BseYI	CCCAGC	1 cut(s)	296
BsgI	GTGCAG	3 cut(s)	446, 1953, 2371
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	3 cut(s)	153, 1788, 2413
BshNI	GGYRCC	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	820
BsiHKAI	GWGCWC	2 cut(s)	761, 1708
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	1 cut(s)	1133
BslFI	GGGAC	1 cut(s)	2345
BslI	CCNNNNNNNGG	2 cut(s)	210, 826
BsmAI	GTCTC	3 cut(s)	672, 1097, 1650
BsmBI	CGTCTC	2 cut(s)	1097, 1650
BsmFI	GGGAC	1 cut(s)	2345
BsnI	GGCC	3 cut(s)	153, 1788, 2413
BsoBI	CYCGRG	1 cut(s)	1084
Bsp1286I	GDGCHC	2 cut(s)	761, 1708
Bsp143I	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp19I	CCATGG	1 cut(s)	1624
BspACI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
BspANI	GGCC	3 cut(s)	153, 1788, 2413
BspCNI	CTCAG	4 cut(s)	562, 772, 1192, 2200
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
BspPI	GGATC	1 cut(s)	2086
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	587
BsrI	ACTGG	3 cut(s)	1480, 1592, 2308
BssECI	CCNNGG	3 cut(s)	887, 1624, 2345
BssMI	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
BssNI	GRCGYC	2 cut(s)	1106, 1659
BssT1I	CCWWGG	2 cut(s)	887, 1624
Bst2UI	CCWGG	1 cut(s)	2280
Bst4CI	ACNGT	7 cut(s)	177, 320, 821, 984, 993, 1011, 1258
Bst6I	CTCTTC	6 cut(s)	21, 82, 331, 457, 1829, 2046
BstACI	GRCGYC	2 cut(s)	1106, 1659
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	2062
BstC8I	GCNNGC	7 cut(s)	137, 169, 343, 1017, 1585, 1888, 2095
BstDEI	CTNAG	9 cut(s)	131, 490, 570, 780, 1029, 1179, 1289, 1564, 2208
BstDSI	CCRYGG	1 cut(s)	1624
BstF5I	GGATG	4 cut(s)	609, 621, 1147, 1198
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	347, 519
BstKTI	GATC	7 cut(s)	475, 926, 931, 1167, 1450, 1841, 2081
BstMAI	GTCTC	3 cut(s)	672, 1097, 1650
BstMBI	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 141, 150, 237, 433, 465, 632, 668, 1880
BstNI	CCWGG	1 cut(s)	2280
BstNSI	RCATGY	8 cut(s)	250, 978, 1019, 1322, 1381, 1690, 1996, 2097
BstSCI	CCNGG	1 cut(s)	2278
BstSFI	CTRYAG	1 cut(s)	2284
BstSLI	GKGCMC	1 cut(s)	1708
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	1264, 1870, 2146
BstV2I	GAAGAC	1 cut(s)	1654
BstX2I	RGATCY	1 cut(s)	1838
BstYI	RGATCY	1 cut(s)	1838
BsuI	GTATCC	1 cut(s)	2318
BsuRI	GGCC	3 cut(s)	153, 1788, 2413
BtgI	CCRYGG	1 cut(s)	1624
BtsCI	GGATG	4 cut(s)	609, 621, 1147, 1198
BtsI	GCAGTG	2 cut(s)	92, 2359
BtsIMutI	CAGTG	4 cut(s)	92, 252, 1599, 2359
Cac8I	GCNNGC	7 cut(s)	137, 169, 343, 1017, 1585, 1888, 2095
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	2 cut(s)	347, 519
Cfr13I	GGNCC	1 cut(s)	2332
Csp6I	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
CviQI	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
DdeI	CTNAG	9 cut(s)	131, 490, 570, 780, 1029, 1179, 1289, 1564, 2208
DpnI	GATC	7 cut(s)	474, 925, 930, 1166, 1449, 1840, 2080
DpnII	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
DrdI	GACNNNNNNGTC	1 cut(s)	1658
DseDI	GACNNNNNNGTC	1 cut(s)	1658
EaeI	YGGCCR	1 cut(s)	1786
Eam1104I	CTCTTC	6 cut(s)	21, 82, 331, 457, 1829, 2046
EarI	CTCTTC	6 cut(s)	21, 82, 331, 457, 1829, 2046
EciI	GGCGGA	2 cut(s)	658, 2390
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	887, 1624
Eco147I	AGGCCT	1 cut(s)	2413
Eco24I	GRGCYC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	2332
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	1084
EcoICRI	GAGCTC	1 cut(s)	759
EcoRI	GAATTC	4 cut(s)	430, 1462, 1750, 2100
EcoRII	CCWGG	1 cut(s)	2278
EcoT14I	CCWWGG	2 cut(s)	887, 1624
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	2 cut(s)	887, 1624
Esp3I	CGTCTC	2 cut(s)	1097, 1650
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	1 cut(s)	2345
FauI	CCCGC	3 cut(s)	134, 176, 362
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	1278, 1884, 2160
FokI	GGATG	4 cut(s)	616, 628, 1154, 1205
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	3 cut(s)	1278, 1884, 2160
FspBI	CTAG	5 cut(s)	804, 888, 1001, 2328, 2432
GlaI	GCGC	2 cut(s)	346, 518
GluI	GCNGC	3 cut(s)	1278, 1884, 2160
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	1553
HaeIII	GGCC	3 cut(s)	153, 1788, 2413
HapII	CCGG	1 cut(s)	1133
HhaI	GCGC	2 cut(s)	347, 519
Hin1I	GRCGYC	2 cut(s)	1106, 1659
Hin6I	GCGC	2 cut(s)	345, 517
HinP1I	GCGC	2 cut(s)	345, 517
HincII	GTYRAC	1 cut(s)	2382
HindII	GTYRAC	1 cut(s)	2382
HindIII	AAGCTT	2 cut(s)	466, 1506
HinfI	GANTC	2 cut(s)	1247, 1931
HpaII	CCGG	1 cut(s)	1133
HphI	GGTGA	3 cut(s)	740, 1087, 2060
Hpy166II	GTNNAC	4 cut(s)	980, 1482, 1706, 2382
Hpy188I	TCNGA	6 cut(s)	408, 876, 928, 1040, 1182, 1806
Hpy188III	TCNNGA	6 cut(s)	104, 211, 941, 1402, 2170, 2432
Hpy8I	GTNNAC	4 cut(s)	980, 1482, 1706, 2382
HpyAV	CCTTC	7 cut(s)	143, 215, 413, 1907, 2207, 2266, 2424
HpyCH4III	ACNGT	7 cut(s)	177, 320, 821, 984, 993, 1011, 1258
HpyCH4IV	ACGT	4 cut(s)	545, 1106, 1659, 2061
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 141, 150, 237, 433, 465, 632, 668, 1880
HpyF3I	CTNAG	9 cut(s)	131, 490, 570, 780, 1029, 1179, 1289, 1564, 2208
HpySE526I	ACGT	4 cut(s)	545, 1106, 1659, 2061
Hsp92I	GRCGYC	2 cut(s)	1106, 1659
HspAI	GCGC	2 cut(s)	345, 517
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	4 cut(s)	128, 584, 1534, 2275
Lsp1109I	GCAGC	3 cut(s)	1264, 1870, 2146
LweI	GCATC	8 cut(s)	1035, 1119, 1132, 1212, 1289, 1577, 1846, 2425
MaeI	CTAG	5 cut(s)	804, 888, 1001, 2328, 2432
MaeII	ACGT	4 cut(s)	545, 1106, 1659, 2061
MalI	GATC	7 cut(s)	474, 925, 930, 1166, 1449, 1840, 2080
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
MflI	RGATCY	1 cut(s)	1838
MhlI	GDGCHC	2 cut(s)	761, 1708
MlsI	TGGCCA	1 cut(s)	1788
MluNI	TGGCCA	1 cut(s)	1788
MmeI	TCCRAC	4 cut(s)	975, 1285, 1987, 2270
Mox20I	TGGCCA	1 cut(s)	1788
MroXI	GAANNNNTTC	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	1788
MseI	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1964, 2421
MslI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
Msp20I	TGGCCA	1 cut(s)	1788
MspA1I	CMGCKG	1 cut(s)	1277
MspI	CCGG	1 cut(s)	1133
MspR9I	CCNGG	1 cut(s)	2280
MvaI	CCWGG	1 cut(s)	2280
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	9 cut(s)	11, 141, 150, 237, 433, 465, 632, 668, 1880
NcoI	CCATGG	1 cut(s)	1624
NdeII	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
NlaIV	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	6 cut(s)	308, 386, 949, 1558, 1640, 1756
NspI	RCATGY	8 cut(s)	250, 978, 1019, 1322, 1381, 1690, 1996, 2097
PaeI	GCATGC	2 cut(s)	1019, 2097
PaeR7I	CTCGAG	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	2413
PciI	ACATGT	3 cut(s)	1377, 1686, 1992
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	2 cut(s)	1247, 1931
PkrI	GCNGC	3 cut(s)	1279, 1885, 2161
Ppu21I	YACGTR	1 cut(s)	2062
PscI	ACATGT	3 cut(s)	1377, 1686, 1992
Psp124BI	GAGCTC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	2278
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	2278
PspN4I	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
PspPI	GGNCC	1 cut(s)	2332
PspXI	VCTCGAGB	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	1838
PvuII	CAGCTG	1 cut(s)	1277
RsaI	GTAC	7 cut(s)	449, 495, 1082, 1481, 1691, 1851, 1949
RsaNI	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
RseI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
SacI	GAGCTC	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1964, 2421
SatI	GCNGC	3 cut(s)	1278, 1884, 2160
Sau3AI	GATC	7 cut(s)	472, 923, 928, 1164, 1447, 1838, 2078
Sau96I	GGNCC	1 cut(s)	2332
ScrFI	CCNGG	1 cut(s)	2280
SduI	GDGCHC	2 cut(s)	761, 1708
SfaNI	GCATC	8 cut(s)	1035, 1119, 1132, 1212, 1289, 1577, 1846, 2425
SfcI	CTRYAG	1 cut(s)	2284
Sfr274I	CTCGAG	1 cut(s)	1084
SinI	GGWCC	1 cut(s)	2332
SlaI	CTCGAG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
SmlI	CTYRAG	1 cut(s)	1084
SmoI	CTYRAG	1 cut(s)	1084
SphI	GCATGC	2 cut(s)	1019, 2097
SseBI	AGGCCT	1 cut(s)	2413
SsiI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
SspMI	CTAG	5 cut(s)	804, 888, 1001, 2328, 2432
SstI	GAGCTC	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	2413
StyD4I	CCNGG	1 cut(s)	2278
StyI	CCWWGG	2 cut(s)	887, 1624
TaaI	ACNGT	7 cut(s)	177, 320, 821, 984, 993, 1011, 1258
TaiI	ACGT	4 cut(s)	548, 1109, 1662, 2064
TaqI	TCGA	5 cut(s)	105, 180, 580, 816, 1085
TaqII	GACCGA	1 cut(s)	1668
TatI	WGTACW	4 cut(s)	447, 1080, 1689, 1947
TfiI	GAWTC	2 cut(s)	1247, 1931
Tru1I	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1964, 2421
Tru9I	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1964, 2421
TscAI	CASTG	4 cut(s)	99, 259, 1599, 2359
TseFI	GTSAC	6 cut(s)	308, 386, 949, 1558, 1640, 1756
TseI	GCWGC	3 cut(s)	1277, 1883, 2159
Tsp45I	GTSAC	6 cut(s)	308, 386, 949, 1558, 1640, 1756
TspRI	CASTG	4 cut(s)	99, 259, 1599, 2359
VneI	GTGCAC	1 cut(s)	1704
VpaK11BI	GGWCC	1 cut(s)	2332
XapI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
XbaI	TCTAGA	1 cut(s)	2431
XceI	RCATGY	8 cut(s)	250, 978, 1019, 1322, 1381, 1690, 1996, 2097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1774
XhoI	CTCGAG	1 cut(s)	1084
XmaJI	CCTAGG	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	5 cut(s)	804, 888, 1001, 2328, 2432
ZraI	GACGTC	2 cut(s)	1107, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.