Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22150 AT3G22150 |
| fragaria_vesca | FvH4_5g30430 FvH4_5g30430 |
| malus_domestica | MD09G1140900.v1.1 MD09G1141400.v1.1 MD09G1141900.v1.1 |
| prunus_persica | Prupe.3G184500_v2.0.a1 |
| pyrus_communis | pycom09g06220 pycom17g12210 |
| rosa_chinensis | RchiOBHm_Chr2g0153281 |
| rosa_laevigata | RLG00000020690 |
| rosa_multiflora | Rmu_sc0000442.1_g000012 Rmu_sc0004856.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00095060 |
| rosa_rugosa | Rorug02G0437900 |
| rosa_samantha | Rh2AG500900 Rh2BG512400 Rh2CG487100 Rh2DG524100 |
| rosa_wichuraiana | Rw2G041110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 408 |
| AccI | GTMKAC | 1 cut(s) | 1442 |
| AciI | CCGC | 5 cut(s) | 136, 178, 364, 678, 1648 |
| AclWI | GGATC | 1 cut(s) | 2095 |
| AcsI | RAATTY | 6 cut(s) | 1425, 1471, 1759, 2039, 2079, 2109 |
| AcuI | CTGAAG | 1 cut(s) | 1530 |
| AdeI | CACNNNGTG | 1 cut(s) | 641 |
| AfaI | GTAC | 7 cut(s) | 326, 458, 504, 1655, 1700, 1860, 1958 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 219, 292, 870 |
| AflIII | ACRYGT | 2 cut(s) | 1386, 2001 |
| AgeI | ACCGGT | 1 cut(s) | 2312 |
| AjnI | CCWGG | 1 cut(s) | 1305 |
| Alw21I | GWGCWC | 2 cut(s) | 770, 1822 |
| Alw26I | GTCTC | 2 cut(s) | 681, 2279 |
| AlwI | GGATC | 1 cut(s) | 2095 |
| AoxI | GGCC | 5 cut(s) | 3, 160, 294, 1461, 2420 |
| ApeKI | GCWGC | 1 cut(s) | 1627 |
| ApoI | RAATTY | 6 cut(s) | 1425, 1471, 1759, 2039, 2079, 2109 |
| AsiGI | ACCGGT | 1 cut(s) | 2312 |
| AspLEI | GCGC | 2 cut(s) | 356, 1715 |
| AspS9I | GGNCC | 1 cut(s) | 2341 |
| AsuHPI | GGTGA | 6 cut(s) | 746, 970, 1561, 1823, 2069, 2078 |
| AvaII | GGWCC | 1 cut(s) | 2341 |
| BanI | GGYRCC | 1 cut(s) | 408 |
| BanII | GRGCYC | 2 cut(s) | 770, 1822 |
| Bbv12I | GWGCWC | 2 cut(s) | 770, 1822 |
| BbvCI | CCTCAGC | 2 cut(s) | 91, 140 |
| BbvI | GCAGC | 1 cut(s) | 1639 |
| BccI | CCATC | 3 cut(s) | 236, 370, 1360 |
| BceAI | ACGGC | 2 cut(s) | 746, 1992 |
| BciT130I | CCWGG | 1 cut(s) | 1307 |
| BciVI | GTATCC | 1 cut(s) | 1481 |
| BcoDI | GTCTC | 2 cut(s) | 681, 2279 |
| BfaI | CTAG | 3 cut(s) | 813, 2337, 2441 |
| BfmI | CTRYAG | 1 cut(s) | 1897 |
| BfuI | GTATCC | 1 cut(s) | 1481 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 159 |
| BglII | AGATCT | 1 cut(s) | 1847 |
| BisI | GCNGC | 1 cut(s) | 1628 |
| BlpI | GCTNAGC | 1 cut(s) | 769 |
| BlsI | GCNGC | 1 cut(s) | 1629 |
| Bme1390I | CCNGG | 1 cut(s) | 1307 |
| Bme18I | GGWCC | 1 cut(s) | 2341 |
| BmgT120I | GGNCC | 1 cut(s) | 2341 |
| BmiI | GGNNCC | 4 cut(s) | 410, 1747, 2342, 2457 |
| BmrFI | CCNGG | 1 cut(s) | 1307 |
| BmrI | ACTGGG | 2 cut(s) | 1796, 2350 |
| BmsI | GCATC | 6 cut(s) | 1044, 1221, 1527, 1586, 1855, 2434 |
| BmuI | ACTGGG | 2 cut(s) | 1796, 2350 |
| Bpu10I | CCTNAGC | 3 cut(s) | 91, 140, 1573 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 769 |
| BpuEI | CTTGAG | 2 cut(s) | 1562, 2296 |
| BsaAI | YACGTR | 1 cut(s) | 506 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1455 |
| BsaJI | CCNNGG | 2 cut(s) | 2095, 2217 |
| BsaWI | WCCGGW | 1 cut(s) | 2312 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 25, 55 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 219, 292, 870 |
| Bse118I | RCCGGY | 1 cut(s) | 2312 |
| Bse1I | ACTGG | 8 cut(s) | 1601, 1651, 1747, 1791, 2188, 2293, 2356, 2416 |
| Bse3DI | GCAATG | 1 cut(s) | 391 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1455 |
| BseBI | CCWGG | 1 cut(s) | 1307 |
| BseDI | CCNNGG | 2 cut(s) | 2095, 2217 |
| BseGI | GGATG | 3 cut(s) | 1156, 1371, 2297 |
| BseJI | GATNNNNATC | 1 cut(s) | 1455 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 219, 292, 870 |
| BseMI | GCAATG | 1 cut(s) | 391 |
| BseMII | CTCAG | 8 cut(s) | 105, 154, 593, 783, 1134, 1218, 2136, 2443 |
| BseNI | ACTGG | 8 cut(s) | 1601, 1651, 1747, 1791, 2188, 2293, 2356, 2416 |
| BseRI | GAGGAG | 1 cut(s) | 289 |
| BseXI | GCAGC | 1 cut(s) | 1639 |
| BseYI | CCCAGC | 2 cut(s) | 422, 1588 |
| BsgI | GTGCAG | 1 cut(s) | 2125 |
| BshFI | GGCC | 5 cut(s) | 5, 162, 296, 1463, 2422 |
| BshNI | GGYRCC | 1 cut(s) | 408 |
| BshTI | ACCGGT | 1 cut(s) | 2312 |
| BsiHKAI | GWGCWC | 2 cut(s) | 770, 1822 |
| BsiSI | CCGG | 1 cut(s) | 2313 |
| BslFI | GGGAC | 1 cut(s) | 2354 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 219, 292, 870 |
| BsmAI | GTCTC | 2 cut(s) | 681, 2279 |
| BsmFI | GGGAC | 1 cut(s) | 2354 |
| BsmI | GAATGC | 1 cut(s) | 1181 |
| BsnI | GGCC | 5 cut(s) | 5, 162, 296, 1463, 2422 |
| Bsp1286I | GDGCHC | 2 cut(s) | 770, 1822 |
| Bsp143I | GATC | 3 cut(s) | 1456, 1847, 2087 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 769 |
| BspACI | CCGC | 5 cut(s) | 136, 178, 364, 678, 1648 |
| BspANI | GGCC | 5 cut(s) | 5, 162, 296, 1463, 2422 |
| BspCNI | CTCAG | 8 cut(s) | 104, 153, 592, 782, 1135, 1219, 2137, 2442 |
| BspLI | GGNNCC | 4 cut(s) | 410, 1747, 2342, 2457 |
| BspPI | GGATC | 1 cut(s) | 2095 |
| BspQI | GCTCTTC | 1 cut(s) | 21 |
| BspT107I | GGYRCC | 1 cut(s) | 408 |
| BsrDI | GCAATG | 1 cut(s) | 391 |
| BsrFI | RCCGGY | 1 cut(s) | 2312 |
| BsrI | ACTGG | 8 cut(s) | 1601, 1651, 1747, 1791, 2188, 2293, 2356, 2416 |
| BssAI | RCCGGY | 1 cut(s) | 2312 |
| BssECI | CCNNGG | 2 cut(s) | 2095, 2217 |
| BssMI | GATC | 3 cut(s) | 1456, 1847, 2087 |
| BssNAI | GTATAC | 1 cut(s) | 1443 |
| BssT1I | CCWWGG | 1 cut(s) | 2095 |
| Bst1107I | GTATAC | 1 cut(s) | 1443 |
| Bst2UI | CCWGG | 1 cut(s) | 1307 |
| Bst4CI | ACNGT | 6 cut(s) | 214, 993, 1002, 1245, 1267, 2327 |
| Bst6I | CTCTTC | 4 cut(s) | 21, 201, 2014, 2055 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 150 |
| BstBAI | YACGTR | 1 cut(s) | 506 |
| BstC8I | GCNNGC | 4 cut(s) | 178, 352, 466, 2104 |
| BstF5I | GGATG | 3 cut(s) | 1156, 1371, 2297 |
| BstHHI | GCGC | 2 cut(s) | 356, 1715 |
| BstKTI | GATC | 3 cut(s) | 1459, 1850, 2090 |
| BstMAI | GTCTC | 2 cut(s) | 681, 2279 |
| BstMBI | GATC | 3 cut(s) | 1456, 1847, 2087 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 150, 159, 677, 980, 2184 |
| BstNI | CCWGG | 1 cut(s) | 1307 |
| BstNSI | RCATGY | 5 cut(s) | 259, 987, 1028, 1390, 2005 |
| BstSCI | CCNGG | 1 cut(s) | 1305 |
| BstSFI | CTRYAG | 1 cut(s) | 1897 |
| BstSNI | TACGTA | 1 cut(s) | 506 |
| BstV1I | GCAGC | 1 cut(s) | 1639 |
| BstX2I | RGATCY | 1 cut(s) | 1847 |
| BstYI | RGATCY | 1 cut(s) | 1847 |
| BstZ17I | GTATAC | 1 cut(s) | 1443 |
| BsuI | GTATCC | 1 cut(s) | 1481 |
| BsuRI | GGCC | 5 cut(s) | 5, 162, 296, 1463, 2422 |
| BtsCI | GGATG | 3 cut(s) | 1156, 1371, 2297 |
| BtsIMutI | CAGTG | 2 cut(s) | 1608, 2363 |
| Cac8I | GCNNGC | 4 cut(s) | 178, 352, 466, 2104 |
| CfoI | GCGC | 2 cut(s) | 356, 1715 |
| Cfr10I | RCCGGY | 1 cut(s) | 2312 |
| Cfr13I | GGNCC | 1 cut(s) | 2341 |
| Csp6I | GTAC | 7 cut(s) | 325, 457, 503, 1654, 1699, 1859, 1957 |
| CspAI | ACCGGT | 1 cut(s) | 2312 |
| CviQI | GTAC | 7 cut(s) | 325, 457, 503, 1654, 1699, 1859, 1957 |
| DpnI | GATC | 3 cut(s) | 1458, 1849, 2089 |
| DpnII | GATC | 3 cut(s) | 1456, 1847, 2087 |
| DraIII | CACNNNGTG | 1 cut(s) | 641 |
| Eam1104I | CTCTTC | 4 cut(s) | 21, 201, 2014, 2055 |
| EarI | CTCTTC | 4 cut(s) | 21, 201, 2014, 2055 |
| EciI | GGCGGA | 1 cut(s) | 1637 |
| Ecl136II | GAGCTC | 2 cut(s) | 768, 1820 |
| Eco105I | TACGTA | 1 cut(s) | 506 |
| Eco130I | CCWWGG | 1 cut(s) | 2095 |
| Eco147I | AGGCCT | 2 cut(s) | 296, 2422 |
| Eco24I | GRGCYC | 2 cut(s) | 770, 1822 |
| Eco47I | GGWCC | 1 cut(s) | 2341 |
| Eco53kI | GAGCTC | 2 cut(s) | 768, 1820 |
| Eco57I | CTGAAG | 1 cut(s) | 1530 |
| EcoICRI | GAGCTC | 2 cut(s) | 768, 1820 |
| EcoRI | GAATTC | 3 cut(s) | 1471, 1759, 2109 |
| EcoRII | CCWGG | 1 cut(s) | 1305 |
| EcoT14I | CCWWGG | 1 cut(s) | 2095 |
| EcoT38I | GRGCYC | 2 cut(s) | 770, 1822 |
| ErhI | CCWWGG | 1 cut(s) | 2095 |
| FaqI | GGGAC | 1 cut(s) | 2354 |
| FauI | CCCGC | 3 cut(s) | 143, 185, 371 |
| FblI | GTMKAC | 1 cut(s) | 1442 |
| Fnu4HI | GCNGC | 1 cut(s) | 1628 |
| FokI | GGATG | 3 cut(s) | 1163, 1378, 2304 |
| FriOI | GRGCYC | 2 cut(s) | 770, 1822 |
| Fsp4HI | GCNGC | 1 cut(s) | 1628 |
| FspBI | CTAG | 3 cut(s) | 813, 2337, 2441 |
| GlaI | GCGC | 2 cut(s) | 355, 1714 |
| GluI | GCNGC | 1 cut(s) | 1628 |
| GsaI | CCCAGC | 2 cut(s) | 426, 1592 |
| HaeIII | GGCC | 5 cut(s) | 5, 162, 296, 1463, 2422 |
| HapII | CCGG | 1 cut(s) | 2313 |
| HhaI | GCGC | 2 cut(s) | 356, 1715 |
| Hin6I | GCGC | 2 cut(s) | 354, 1713 |
| HinP1I | GCGC | 2 cut(s) | 354, 1713 |
| HincII | GTYRAC | 2 cut(s) | 1799, 2242 |
| HindII | GTYRAC | 2 cut(s) | 1799, 2242 |
| HindIII | AAGCTT | 3 cut(s) | 1209, 1515, 2031 |
| HinfI | GANTC | 6 cut(s) | 320, 418, 577, 1256, 1549, 1940 |
| HpaII | CCGG | 1 cut(s) | 2313 |
| HphI | GGTGA | 6 cut(s) | 746, 970, 1561, 1823, 2069, 2078 |
| Hpy166II | GTNNAC | 6 cut(s) | 327, 989, 1443, 1699, 1799, 2242 |
| Hpy188I | TCNGA | 7 cut(s) | 319, 490, 582, 937, 1228, 1679, 2322 |
| Hpy188III | TCNNGA | 6 cut(s) | 74, 220, 373, 950, 1084, 2441 |
| Hpy8I | GTNNAC | 6 cut(s) | 327, 989, 1443, 1699, 1799, 2242 |
| Hpy99I | CGWCG | 1 cut(s) | 2401 |
| HpyAV | CCTTC | 7 cut(s) | 16, 152, 286, 902, 1916, 2216, 2433 |
| HpyCH4III | ACNGT | 6 cut(s) | 214, 993, 1002, 1245, 1267, 2327 |
| HpyCH4IV | ACGT | 3 cut(s) | 505, 537, 554 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 150, 159, 677, 980, 2184 |
| HpySE526I | ACGT | 3 cut(s) | 505, 537, 554 |
| HspAI | GCGC | 2 cut(s) | 354, 1713 |
| Kzo9I | GATC | 3 cut(s) | 1456, 1847, 2087 |
| LguI | GCTCTTC | 1 cut(s) | 21 |
| LmnI | GCTCC | 3 cut(s) | 137, 1635, 2455 |
| Lsp1109I | GCAGC | 1 cut(s) | 1639 |
| LweI | GCATC | 6 cut(s) | 1044, 1221, 1527, 1586, 1855, 2434 |
| MaeI | CTAG | 3 cut(s) | 813, 2337, 2441 |
| MaeII | ACGT | 3 cut(s) | 505, 537, 554 |
| MaeIII | GTNAC | 6 cut(s) | 958, 1261, 1267, 1567, 1765, 2071 |
| MalI | GATC | 3 cut(s) | 1458, 1849, 2089 |
| MboI | GATC | 3 cut(s) | 1456, 1847, 2087 |
| MboII | GAAGA | 9 cut(s) | 8, 188, 327, 395, 829, 1523, 1768, 2031, 2072 |
| MfeI | CAATTG | 1 cut(s) | 182 |
| MflI | RGATCY | 1 cut(s) | 1847 |
| MhlI | GDGCHC | 2 cut(s) | 770, 1822 |
| MlyI | GAGTC | 2 cut(s) | 314, 571 |
| MmeI | TCCRAC | 5 cut(s) | 984, 1657, 1996, 2279, 2361 |
| MseI | TTAA | 6 cut(s) | 573, 609, 977, 1214, 1965, 1973 |
| MslI | CAYNNNNRTG | 5 cut(s) | 396, 779, 1385, 1616, 1778 |
| MspI | CCGG | 1 cut(s) | 2313 |
| MspR9I | CCNGG | 1 cut(s) | 1307 |
| MunI | CAATTG | 1 cut(s) | 182 |
| Mva1269I | GAATGC | 1 cut(s) | 1181 |
| MvaI | CCWGG | 1 cut(s) | 1307 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 150, 159, 677, 980, 2184 |
| NdeII | GATC | 3 cut(s) | 1456, 1847, 2087 |
| NlaIV | GGNNCC | 4 cut(s) | 410, 1747, 2342, 2457 |
| NmeAIII | GCCGAG | 1 cut(s) | 2242 |
| NmuCI | GTSAC | 4 cut(s) | 958, 1567, 1765, 2071 |
| NspI | RCATGY | 5 cut(s) | 259, 987, 1028, 1390, 2005 |
| PceI | AGGCCT | 2 cut(s) | 296, 2422 |
| PciI | ACATGT | 2 cut(s) | 1386, 2001 |
| PciSI | GCTCTTC | 1 cut(s) | 21 |
| PctI | GAATGC | 1 cut(s) | 1181 |
| PfeI | GAWTC | 4 cut(s) | 418, 1256, 1549, 1940 |
| PinAI | ACCGGT | 1 cut(s) | 2312 |
| PkrI | GCNGC | 1 cut(s) | 1629 |
| PleI | GAGTC | 2 cut(s) | 314, 571 |
| PpsI | GAGTC | 2 cut(s) | 314, 571 |
| Ppu21I | YACGTR | 1 cut(s) | 506 |
| PscI | ACATGT | 2 cut(s) | 1386, 2001 |
| Psp124BI | GAGCTC | 2 cut(s) | 770, 1822 |
| Psp6I | CCWGG | 1 cut(s) | 1305 |
| PspFI | CCCAGC | 2 cut(s) | 422, 1588 |
| PspGI | CCWGG | 1 cut(s) | 1305 |
| PspN4I | GGNNCC | 4 cut(s) | 410, 1747, 2342, 2457 |
| PspPI | GGNCC | 1 cut(s) | 2341 |
| PsuI | RGATCY | 1 cut(s) | 1847 |
| RsaI | GTAC | 7 cut(s) | 326, 458, 504, 1655, 1700, 1860, 1958 |
| RsaNI | GTAC | 7 cut(s) | 325, 457, 503, 1654, 1699, 1859, 1957 |
| RseI | CAYNNNNRTG | 5 cut(s) | 396, 779, 1385, 1616, 1778 |
| SacI | GAGCTC | 2 cut(s) | 770, 1822 |
| SapI | GCTCTTC | 1 cut(s) | 21 |
| SaqAI | TTAA | 6 cut(s) | 573, 609, 977, 1214, 1965, 1973 |
| SatI | GCNGC | 1 cut(s) | 1628 |
| Sau3AI | GATC | 3 cut(s) | 1456, 1847, 2087 |
| Sau96I | GGNCC | 1 cut(s) | 2341 |
| SchI | GAGTC | 2 cut(s) | 314, 571 |
| ScrFI | CCNGG | 1 cut(s) | 1307 |
| SduI | GDGCHC | 2 cut(s) | 770, 1822 |
| SfaNI | GCATC | 6 cut(s) | 1044, 1221, 1527, 1586, 1855, 2434 |
| SfcI | CTRYAG | 1 cut(s) | 1897 |
| SinI | GGWCC | 1 cut(s) | 2341 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 396, 779, 1385, 1616, 1778 |
| SmlI | CTYRAG | 2 cut(s) | 1541, 2275 |
| SmoI | CTYRAG | 2 cut(s) | 1541, 2275 |
| SnaBI | TACGTA | 1 cut(s) | 506 |
| SseBI | AGGCCT | 2 cut(s) | 296, 2422 |
| SsiI | CCGC | 5 cut(s) | 136, 178, 364, 678, 1648 |
| SspI | AATATT | 3 cut(s) | 1128, 1963, 2209 |
| SspMI | CTAG | 3 cut(s) | 813, 2337, 2441 |
| SstI | GAGCTC | 2 cut(s) | 770, 1822 |
| StuI | AGGCCT | 2 cut(s) | 296, 2422 |
| StyD4I | CCNGG | 1 cut(s) | 1305 |
| StyI | CCWWGG | 1 cut(s) | 2095 |
| TaaI | ACNGT | 6 cut(s) | 214, 993, 1002, 1245, 1267, 2327 |
| TaiI | ACGT | 3 cut(s) | 508, 540, 557 |
| TatI | WGTACW | 3 cut(s) | 456, 1698, 1956 |
| TfiI | GAWTC | 4 cut(s) | 418, 1256, 1549, 1940 |
| Tru1I | TTAA | 6 cut(s) | 573, 609, 977, 1214, 1965, 1973 |
| Tru9I | TTAA | 6 cut(s) | 573, 609, 977, 1214, 1965, 1973 |
| TscAI | CASTG | 2 cut(s) | 1608, 2363 |
| TseFI | GTSAC | 4 cut(s) | 958, 1567, 1765, 2071 |
| TseI | GCWGC | 1 cut(s) | 1627 |
| Tsp45I | GTSAC | 4 cut(s) | 958, 1567, 1765, 2071 |
| TspGWI | ACGGA | 3 cut(s) | 1249, 1362, 2090 |
| TspRI | CASTG | 2 cut(s) | 1608, 2363 |
| VpaK11BI | GGWCC | 1 cut(s) | 2341 |
| XapI | RAATTY | 6 cut(s) | 1425, 1471, 1759, 2039, 2079, 2109 |
| XbaI | TCTAGA | 1 cut(s) | 2440 |
| XceI | RCATGY | 5 cut(s) | 259, 987, 1028, 1390, 2005 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1783 |
| XmiI | GTMKAC | 1 cut(s) | 1442 |
| XspI | CTAG | 3 cut(s) | 813, 2337, 2441 |