Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010197

Physical Location & Seq

Genomic Coordinates Forward (+)

65338411 .. 65354440

Gene Structure 16030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG487100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGGCTTCCTCTGCTCTTCCCCCACCTCTCTCCATGCCCACTCAAACCCCCATACCCAACTCTCCTCACAATCTCTTTTCCCCAACCTTCCCACTGCCAACTCTCGAAACCGCCACAATTCGCTCCCGCCTACGCAGGCTCTGCCAAGAAGGCCAACCCCACCTTGCCCGCCAACTGTTCGACACTTTGCCTCGCCCAACAACCCTTCTCTGGAACACCATCATCATTGGCTTCATCTGCAACAATATGCCCTCTGAAGCCATCTTGTTCTATTCCCACATGAAAAACTCCTCCCCCAACACCAAATGTGACCCTTACACTTACTCTTCCACCCTCAAAGCCTGCGCCGATACCCGCAATTTCAACACTGGCAAGGCTGTGCATTGTCACATTCTTCGGTGCCTTCCGAACCCAAGTATGATTGTGCAGAATTCGCTAATGAATATGTACTCTTCCTGCATTGGAAGCTTTGATCATGCCAAGTATGACTTAGTACGCAAGGTGTTCGACACAATGCGCGAGAGAAATGTGGTTGCGTGGAACACGTTGGTTTCGTGGTATGTTAAGACTGAGAGGTATCGAGGAGCGGTTAAGCAGTTTAGGATGATGATGAGGATGAGAATAACCCCAAGTGCTGTGAGTTTTGTCAATGTTTTCCCTGCTTTATCCGCCGTGACAGACTATAAAAATGCCAATGTTTTATATGGTTTGGTTTTTAGATTTGGCGGTGAGTATGTGCATGACTTGTTTGTTGTGAGCTCGGCGATATTTATGTATGCTGAGCTTGGTTGCCTTGATTATGCTAGGAAGATTTTCGACCGTTGTTTGGGGAGAAACACAGAGATATGGAACACCATGATTGGTGGGTATGTTCAGAATAATCTTCCTGGGGAAGCAATCAGCCTTTTCTTTCAAGCCATACGATCAGAACAGGCTGTTCTTGATGAAGTGACTTTTCTTTCGGTTTTAACTGCATGTTCACAGTTGCAACAGTTGGAACTAGCTGGACAGTTGCATGCTTTTATTACTAAGCATTTCAGAGTGATGCCTGTTATTTTACTAAATGCAATTATGGTGATGTACTCTAGGTGCAATTCTATTGAGACGTCGTTTAAGTTTTTTCATAAGATGCCGGAGAGGGATGCTGTTTCATGGAATACTATGATCTCTGTGTTTTCTCAGAGTGGCTTGGATGATGATGCTTTAATGCTTGTTTATGAGATGCAAAAGCAAAAGTTTTTGATCGATTCTGTAACTGTAACTGCTCTGCTTTCGGCTGCATCAAATCTTAGAAACCTAGATGTTGGACAGCAGACACATGCTTATATTATTAGGCATGGAATAGAATTTGAGGGAATGGAAAGTTATCTCATAGACATGTATGCCAAATCTGGTTCAGTCAGGATTGCAGAACGACTTTTCAAAAAGAACTATATTGTTGATAGAGATCATGCTACTTGGAATTCTATGGTTACTGGGTACACACAGAACGGCATGATTGAAGAAGCTTTTGTAGTTTTTAGGAAAATGCTGGAGCAGAAGCTAATACCAAATGCTGTGACCTTAGCATCAATTTTCCCTGCTTGCAATCCAGTGGGGAACATAGACATGGGTAAGCAACTCCATGGGTTCTCTTTTCGTCACTACCTTAACCGAGACGTCTTCGTGGGAACTGCTCTAATTGACATGTACTCAAAATGTGGTGCACTAACTTATGCTGAAAATGTGTTTTTTGAAACCCATGAAAAGAATTCTGTCACATACACCACAATGATATTGGGCTATGGCCAACATGGAATGGGTCAGAAAGCTGTGTCTTTGTTTCACTCAATGAAGAGATCTGGCATTGTACCTGATGCAGTTACCTTTGTTGCAGTCTTGTCTGCTTGCAGTTATGCTGGTTTGGTTGATGAAGGTCTTTCTTTATATGATTCAATGAAAATGGAGTACAACATAAAATCATTAACTGCACATTATTGTTGTATAGCGGACATGTTAGGGAGGGTTGGAAAAGTAGTTGAAGCATACGATTTTGTTATAGGGTTGGGTGAAGAGGGTTACGTGATAGAAATTTGGGGATCACTTCTTGGTGCATGCAGAATTCATAAACAATTTGAATTGGGCAAGATTGTTGCTGATAAATTGCTTGAAATAAAGGCTGCTACTGTCAAGACAGGCTACCATGTTTTGCTCTCAAATATGTATGCTGAGGAAGGAAAGTGGGAAATTGTTGATAAAATGAGAAAACAAATGAAAGAGAAAGGTTTGAAGAAGGAGCCTGGCTGTAGTTGGATTGAGATTACTGGTTTCCTGAACTGTTTCATTTCTAGGGACCAAAAGCACCCTCAGTGCAGTGAGATATATGGTATGTTGGCGGAGTTGACTATGATGATGAAAGAAGCTGGTTATAGGCCTTCTCTCAATTCCCATCTAGATGCAATTTTGGAACCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

818

Amino Acids

92.48

Weight (kDa)

8.23

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 116	3.8e-06	PPR repeat family
PPR_2	PF13041	175 - 220	3.2e-07	PPR repeat family
PPR_2	PF13041	381 - 426	1.3e-07	PPR repeat family
PPR_1	PF12854	482 - 510	1e-05	PPR repeat
PPR_2	PF13041	483 - 529	3.3e-09	PPR repeat family
PPR	PF01535	486 - 513	6.8e-08	PPR repeat
PPR_2	PF13041	583 - 630	2.1e-13	PPR repeat family
PPR	PF01535	586 - 616	5.3e-09	PPR repeat
E_motif	PF20431	702 - 766	2e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22150 AT3G22150
fragaria_vesca	FvH4_5g30430 FvH4_5g30430
malus_domestica	MD09G1140900.v1.1 MD09G1141400.v1.1 MD09G1141900.v1.1
prunus_persica	Prupe.3G184500_v2.0.a1
pyrus_communis	pycom09g06220 pycom17g12210
rosa_chinensis	RchiOBHm_Chr2g0153281
rosa_laevigata	RLG00000020690
rosa_multiflora	Rmu_sc0000442.1_g000012 Rmu_sc0004856.1_g000015
rosa_roxburghii	Rroxscaffold_2G00095060
rosa_rugosa	Rorug02G0437900
rosa_samantha	Rh2AG500900 Rh2BG512400 Rh2CG487100 Rh2DG524100
rosa_wichuraiana	Rw2G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1109, 1662
AccB1I	GGYRCC	1 cut(s)	399
AccBSI	CCGCTC	1 cut(s)	587
AccII	CGCG	1 cut(s)	519
AciI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
AclWI	GGATC	1 cut(s)	2086
AcoI	YGGCCR	1 cut(s)	1786
AcsI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	1106, 1659
AfaI	GTAC	7 cut(s)	449, 495, 1082, 1481, 1691, 1851, 1949
AfiI	CCNNNNNNNGG	2 cut(s)	210, 826
AflIII	ACRYGT	4 cut(s)	543, 1377, 1686, 1992
AjnI	CCWGG	2 cut(s)	886, 2278
AluBI	AGCT	8 cut(s)	468, 759, 784, 1004, 1508, 1543, 1811, 2402
AluI	AGCT	8 cut(s)	468, 759, 784, 1004, 1508, 1543, 1811, 2402
Alw21I	GWGCWC	2 cut(s)	761, 1708
Alw26I	GTCTC	2 cut(s)	1097, 1650
Alw44I	GTGCAC	1 cut(s)	1704
AlwI	GGATC	1 cut(s)	2086
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	3 cut(s)	151, 1786, 2411
ApaLI	GTGCAC	1 cut(s)	1704
ApeKI	GCWGC	2 cut(s)	1277, 2159
ApoI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
ArsI	GACNNNNNNTTYG	2 cut(s)	943, 975
Asp700I	GAANNNNTTC	2 cut(s)	812, 2318
AspLEI	GCGC	2 cut(s)	347, 519
AspS9I	GGNCC	1 cut(s)	2332
AsuHPI	GGTGA	3 cut(s)	740, 1087, 2060
AvaII	GGWCC	1 cut(s)	2332
BaeGI	GKGCMC	1 cut(s)	1708
BalI	TGGCCA	1 cut(s)	1788
BanI	GGYRCC	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	1654
Bbv12I	GWGCWC	2 cut(s)	761, 1708
BbvCI	CCTCAGC	1 cut(s)	2208
BbvI	GCAGC	2 cut(s)	1264, 2146
BccI	CCATC	3 cut(s)	227, 269, 2436
BceAI	ACGGC	2 cut(s)	656, 1507
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	2 cut(s)	888, 2280
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	1097, 1650
BfaI	CTAG	6 cut(s)	804, 1001, 1086, 1298, 2328, 2432
BfmI	CTRYAG	1 cut(s)	2284
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	1838
BisI	GCNGC	2 cut(s)	1278, 2160
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	2 cut(s)	1279, 2161
Bme1390I	CCNGG	2 cut(s)	888, 2280
Bme18I	GGWCC	1 cut(s)	2332
BmgT120I	GGNCC	1 cut(s)	2332
BmiI	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
BmrFI	CCNGG	2 cut(s)	888, 2280
BmrI	ACTGGG	1 cut(s)	1485
BmsI	GCATC	9 cut(s)	1035, 1119, 1132, 1189, 1212, 1289, 1577, 1846, 2425
BmuI	ACTGGG	1 cut(s)	1485
BpiI	GAAGAC	1 cut(s)	1654
BpmI	CTGGAG	1 cut(s)	1553
Bpu10I	CCTNAGC	2 cut(s)	1564, 2208
Bpu1102I	GCTNAGC	1 cut(s)	780
Bsa29I	ATCGAT	1 cut(s)	1245
BsaAI	YACGTR	1 cut(s)	2062
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaHI	GRCGYC	2 cut(s)	1106, 1659
BsaJI	CCNNGG	2 cut(s)	887, 1624
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 826
Bse1I	ACTGG	4 cut(s)	373, 1480, 1592, 2308
Bse8I	GATNNNNATC	1 cut(s)	1446
BseBI	CCWGG	2 cut(s)	888, 2280
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	2 cut(s)	887, 1624
BseGI	GGATG	4 cut(s)	609, 621, 1147, 1198
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	2 cut(s)	210, 826
BseMII	CTCAG	5 cut(s)	561, 771, 1193, 2199, 2360
BseNI	ACTGG	4 cut(s)	373, 1480, 1592, 2308
BseRI	GAGGAG	3 cut(s)	54, 280, 597
BseSI	GKGCMC	1 cut(s)	1708
BseXI	GCAGC	2 cut(s)	1264, 2146
BsgI	GTGCAG	3 cut(s)	446, 1953, 2371
Bsh1236I	CGCG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	820
BshFI	GGCC	3 cut(s)	153, 1788, 2413
BshNI	GGYRCC	1 cut(s)	399
BshVI	ATCGAT	1 cut(s)	1245
BsiEI	CGRYCG	1 cut(s)	820
BsiHKAI	GWGCWC	2 cut(s)	761, 1708
BsiSI	CCGG	1 cut(s)	1133
BslFI	GGGAC	1 cut(s)	2345
BslI	CCNNNNNNNGG	2 cut(s)	210, 826
BsmAI	GTCTC	2 cut(s)	1097, 1650
BsmBI	CGTCTC	2 cut(s)	1097, 1650
BsmFI	GGGAC	1 cut(s)	2345
BsnI	GGCC	3 cut(s)	153, 1788, 2413
Bsp1286I	GDGCHC	2 cut(s)	761, 1708
Bsp143I	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp19I	CCATGG	1 cut(s)	1624
BspACI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
BspANI	GGCC	3 cut(s)	153, 1788, 2413
BspCNI	CTCAG	5 cut(s)	562, 772, 1192, 2200, 2359
BspDI	ATCGAT	1 cut(s)	1245
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
BspPI	GGATC	1 cut(s)	2086
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	399
BsrBI	CCGCTC	1 cut(s)	587
BsrI	ACTGG	4 cut(s)	373, 1480, 1592, 2308
BssECI	CCNNGG	2 cut(s)	887, 1624
BssMI	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
BssNI	GRCGYC	2 cut(s)	1106, 1659
BssT1I	CCWWGG	1 cut(s)	1624
Bst2UI	CCWGG	2 cut(s)	888, 2280
Bst4CI	ACNGT	8 cut(s)	177, 821, 984, 993, 1011, 1258, 2167, 2318
Bst6I	CTCTTC	5 cut(s)	21, 331, 457, 1829, 2046
BstACI	GRCGYC	2 cut(s)	1106, 1659
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	2062
BstC8I	GCNNGC	7 cut(s)	137, 169, 343, 1017, 1585, 1888, 2095
BstDEI	CTNAG	9 cut(s)	490, 570, 780, 1029, 1179, 1289, 1564, 2208, 2346
BstDSI	CCRYGG	1 cut(s)	1624
BstF5I	GGATG	4 cut(s)	609, 621, 1147, 1198
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	347, 519
BstKTI	GATC	7 cut(s)	475, 926, 1167, 1245, 1450, 1841, 2081
BstMAI	GTCTC	2 cut(s)	1097, 1650
BstMBI	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
BstMCI	CGRYCG	1 cut(s)	820
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 141, 150, 237, 433, 465, 668
BstNI	CCWGG	2 cut(s)	888, 2280
BstNSI	RCATGY	7 cut(s)	978, 1019, 1322, 1381, 1690, 1996, 2097
BstSCI	CCNGG	2 cut(s)	886, 2278
BstSFI	CTRYAG	1 cut(s)	2284
BstSLI	GKGCMC	1 cut(s)	1708
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	1264, 2146
BstV2I	GAAGAC	1 cut(s)	1654
BstX2I	RGATCY	1 cut(s)	1838
BstYI	RGATCY	1 cut(s)	1838
Bsu15I	ATCGAT	1 cut(s)	1245
BsuRI	GGCC	3 cut(s)	153, 1788, 2413
BsuTUI	ATCGAT	1 cut(s)	1245
BtgI	CCRYGG	1 cut(s)	1624
BtsCI	GGATG	4 cut(s)	609, 621, 1147, 1198
BtsI	GCAGTG	2 cut(s)	92, 2359
BtsIMutI	CAGTG	5 cut(s)	92, 366, 1599, 2354, 2359
Cac8I	GCNNGC	7 cut(s)	137, 169, 343, 1017, 1585, 1888, 2095
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	2 cut(s)	347, 519
Cfr13I	GGNCC	1 cut(s)	2332
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
CviQI	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
DdeI	CTNAG	9 cut(s)	490, 570, 780, 1029, 1179, 1289, 1564, 2208, 2346
DpnI	GATC	7 cut(s)	474, 925, 1166, 1244, 1449, 1840, 2080
DpnII	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
EaeI	YGGCCR	1 cut(s)	1786
Eam1104I	CTCTTC	5 cut(s)	21, 331, 457, 1829, 2046
EarI	CTCTTC	5 cut(s)	21, 331, 457, 1829, 2046
EciI	GGCGGA	2 cut(s)	658, 2390
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	1624
Eco147I	AGGCCT	1 cut(s)	2413
Eco24I	GRGCYC	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	2332
Eco53kI	GAGCTC	1 cut(s)	759
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	759
EcoRI	GAATTC	4 cut(s)	430, 1462, 1750, 2100
EcoRII	CCWGG	2 cut(s)	886, 2278
EcoT14I	CCWWGG	1 cut(s)	1624
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	1624
Esp3I	CGTCTC	2 cut(s)	1097, 1650
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	1 cut(s)	2345
FauI	CCCGC	3 cut(s)	134, 176, 362
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	2 cut(s)	1278, 2160
FokI	GGATG	4 cut(s)	616, 628, 1154, 1205
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	2 cut(s)	1278, 2160
FspBI	CTAG	6 cut(s)	804, 1001, 1086, 1298, 2328, 2432
GlaI	GCGC	2 cut(s)	346, 518
GluI	GCNGC	2 cut(s)	1278, 2160
GsuI	CTGGAG	1 cut(s)	1553
HaeIII	GGCC	3 cut(s)	153, 1788, 2413
HapII	CCGG	1 cut(s)	1133
HhaI	GCGC	2 cut(s)	347, 519
Hin1I	GRCGYC	2 cut(s)	1106, 1659
Hin6I	GCGC	2 cut(s)	345, 517
HinP1I	GCGC	2 cut(s)	345, 517
HincII	GTYRAC	1 cut(s)	2382
HindII	GTYRAC	1 cut(s)	2382
HindIII	AAGCTT	2 cut(s)	466, 1506
HinfI	GANTC	2 cut(s)	1247, 1931
HpaII	CCGG	1 cut(s)	1133
HphI	GGTGA	3 cut(s)	740, 1087, 2060
Hpy166II	GTNNAC	4 cut(s)	980, 1482, 1706, 2382
Hpy188I	TCNGA	7 cut(s)	256, 408, 876, 928, 1040, 1182, 1806
Hpy188III	TCNNGA	7 cut(s)	104, 211, 941, 1402, 2170, 2311, 2432
Hpy8I	GTNNAC	4 cut(s)	980, 1482, 1706, 2382
Hpy99I	CGWCG	1 cut(s)	1111
HpyAV	CCTTC	8 cut(s)	97, 143, 215, 413, 1907, 2207, 2266, 2424
HpyCH4III	ACNGT	8 cut(s)	177, 821, 984, 993, 1011, 1258, 2167, 2318
HpyCH4IV	ACGT	4 cut(s)	545, 1106, 1659, 2061
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 141, 150, 237, 433, 465, 668
HpyF3I	CTNAG	9 cut(s)	490, 570, 780, 1029, 1179, 1289, 1564, 2208, 2346
HpySE526I	ACGT	4 cut(s)	545, 1106, 1659, 2061
Hsp92I	GRCGYC	2 cut(s)	1106, 1659
HspAI	GCGC	2 cut(s)	345, 517
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	4 cut(s)	128, 584, 1534, 2275
Lsp1109I	GCAGC	2 cut(s)	1264, 2146
LweI	GCATC	9 cut(s)	1035, 1119, 1132, 1189, 1212, 1289, 1577, 1846, 2425
MaeI	CTAG	6 cut(s)	804, 1001, 1086, 1298, 2328, 2432
MaeII	ACGT	4 cut(s)	545, 1106, 1659, 2061
MalI	GATC	7 cut(s)	474, 925, 1166, 1244, 1449, 1840, 2080
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
MflI	RGATCY	1 cut(s)	1838
MhlI	GDGCHC	2 cut(s)	761, 1708
MlsI	TGGCCA	1 cut(s)	1788
MluNI	TGGCCA	1 cut(s)	1788
MmeI	TCCRAC	4 cut(s)	975, 1285, 1987, 2270
Mox20I	TGGCCA	1 cut(s)	1788
MroXI	GAANNNNTTC	2 cut(s)	812, 2318
MscI	TGGCCA	1 cut(s)	1788
MseI	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1650, 1964
MslI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
Msp20I	TGGCCA	1 cut(s)	1788
MspI	CCGG	1 cut(s)	1133
MspR9I	CCNGG	2 cut(s)	888, 2280
MvaI	CCWGG	2 cut(s)	888, 2280
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	7 cut(s)	11, 141, 150, 237, 433, 465, 668
NcoI	CCATGG	1 cut(s)	1624
NdeII	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
NlaIV	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	7 cut(s)	308, 386, 673, 949, 1558, 1640, 1756
NspI	RCATGY	7 cut(s)	978, 1019, 1322, 1381, 1690, 1996, 2097
PaeI	GCATGC	2 cut(s)	1019, 2097
PceI	AGGCCT	1 cut(s)	2413
PciI	ACATGT	3 cut(s)	1377, 1686, 1992
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PdmI	GAANNNNTTC	2 cut(s)	812, 2318
PfeI	GAWTC	2 cut(s)	1247, 1931
PkrI	GCNGC	2 cut(s)	1279, 2161
Ppu21I	YACGTR	1 cut(s)	2062
PscI	ACATGT	3 cut(s)	1377, 1686, 1992
Psp124BI	GAGCTC	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	886, 2278
PspGI	CCWGG	2 cut(s)	886, 2278
PspN4I	GGNNCC	4 cut(s)	401, 2277, 2333, 2448
PspPI	GGNCC	1 cut(s)	2332
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	1838
RsaI	GTAC	7 cut(s)	449, 495, 1082, 1481, 1691, 1851, 1949
RsaNI	GTAC	7 cut(s)	448, 494, 1081, 1480, 1690, 1850, 1948
RseI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
SacI	GAGCTC	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1650, 1964
SatI	GCNGC	2 cut(s)	1278, 2160
Sau3AI	GATC	7 cut(s)	472, 923, 1164, 1242, 1447, 1838, 2078
Sau96I	GGNCC	1 cut(s)	2332
ScrFI	CCNGG	2 cut(s)	888, 2280
SduI	GDGCHC	2 cut(s)	761, 1708
SfaNI	GCATC	9 cut(s)	1035, 1119, 1132, 1189, 1212, 1289, 1577, 1846, 2425
SfcI	CTRYAG	1 cut(s)	2284
SinI	GGWCC	1 cut(s)	2332
SmiMI	CAYNNNNRTG	4 cut(s)	1376, 1607, 1769, 2433
SphI	GCATGC	2 cut(s)	1019, 2097
SseBI	AGGCCT	1 cut(s)	2413
SsiI	CCGC	9 cut(s)	111, 127, 169, 355, 587, 669, 726, 1988, 2375
SspMI	CTAG	6 cut(s)	804, 1001, 1086, 1298, 2328, 2432
SstI	GAGCTC	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	2413
StyD4I	CCNGG	2 cut(s)	886, 2278
StyI	CCWWGG	1 cut(s)	1624
TaaI	ACNGT	8 cut(s)	177, 821, 984, 993, 1011, 1258, 2167, 2318
TaiI	ACGT	4 cut(s)	548, 1109, 1662, 2064
TaqI	TCGA	6 cut(s)	105, 180, 507, 580, 816, 1245
TatI	WGTACW	4 cut(s)	447, 1080, 1689, 1947
TfiI	GAWTC	2 cut(s)	1247, 1931
Tru1I	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1650, 1964
Tru9I	TTAA	7 cut(s)	564, 591, 968, 1113, 1205, 1650, 1964
TscAI	CASTG	5 cut(s)	99, 373, 1599, 2354, 2359
TseFI	GTSAC	7 cut(s)	308, 386, 673, 949, 1558, 1640, 1756
TseI	GCWGC	2 cut(s)	1277, 2159
Tsp45I	GTSAC	7 cut(s)	308, 386, 673, 949, 1558, 1640, 1756
TspRI	CASTG	5 cut(s)	99, 373, 1599, 2354, 2359
VneI	GTGCAC	1 cut(s)	1704
VpaK11BI	GGWCC	1 cut(s)	2332
XapI	RAATTY	6 cut(s)	430, 1346, 1462, 1750, 2070, 2100
XbaI	TCTAGA	1 cut(s)	2431
XceI	RCATGY	7 cut(s)	978, 1019, 1322, 1381, 1690, 1996, 2097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1774
XmnI	GAANNNNTTC	2 cut(s)	812, 2318
XspI	CTAG	6 cut(s)	804, 1001, 1086, 1298, 2328, 2432
ZraI	GACGTC	2 cut(s)	1107, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.