MD09G1193600.v1.1
ERF Family

Transmembrane 9 superfamily member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
17357468 .. 17361949
4482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1193600.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGGGTAGGAGGATCTCCGCCCCTACTACCACCAACGGGACGACCCTTACCTTCACCGTGCTCCTCCTCATCTCCTCGTCGCACTGCTTCTACCTCCCGGGCGTTGCTCCACGCGATTTCCACACTGGAGATGAACTTTCTATCAAAGTGAACAAATTGTCATCTACAAAGACGCAACTCCCATATGACTATTACTTCTTAAAATATTGTACTCCCCCACAGATTATAAACAGTGCAGAAAATCTGGGGGAGGTTCTCCGTGGTGATCGCATTGAGAATTCTATATACACTTTCAAAATGAGGGAGGAGCAATCCTGTGTAGTAGCTTGTCGACAAAATCTTGACGCTGAATCTGCAAAAAATTTTAAGGAGAAAATTGAAGATAAGTATCGAGTACAAATGATTTTGGATAACCTTCCAGTTGCTGTTCTCAGACAGAGGAGGGATGGAAGTCCCTCAACAACTTATGAACATGGATTCGGTGTTGGATTCAAAGGAAATTATGCTGGGAATAAAGAGGAGAAATATTTTATTAACAACCACTTGAGCTTCCGAGTTATGTATCACAAAGATCCCGAGACTGATTCTGCTCGAATAGTTGGGTTTGAGGTTACTCCAAACAGTATCAATCATGAATATAAGGAGTGGAATGGTAATAATACTCAGTTGGTGACATGCAATAAAGACACAAAAAATCTACCACCGGGAAGCAGTGTTCCACAAGAAGTTGACAAAGATAAGGAGATTGTATTTACATATGATGTCTCCTTTAAGGAAAGTGAGATCAAGTGGGCATCTCGGTGGGACACGTACCTTCTCATGAATGACGATCAGATCCACTGGTTTTCAATTATAAATTCATTGATGATAGTCCTCTTTTTATCTGGTATGGTGGCTATGATCATGATGAGAACTCTATACCGAGATATTGCCAACTATAATCAGCTGGACAGCCAAGATGAGGCTCAAGAAGAAACTGGATGGAAACTTGTTAATGGAGATGTTTTTAGGGCACCAATCAATTCCAATTTACTTTGTGTCTACGTAGGGACAGGGGTTCAGATCTTTGCAATGACACTTGTAACCATGATATTTGCATTGCTGGGCTTCTTGTCTCCTTCCAACCGAGGGGGTCTCATGACTGCCATGGTTCTCTTGTGGGTTTTCATGGGCTTATTTGCTGGCTACTCCTCTGCACGATTGTACAAAATGTTCAAGGGTACAGAGTGGAAGAGGAATACCTTAAAGACTGCCTTTATGTTTCCAGGAATTCTTTTTGCCGTCTTCTTTGTGCTGAATGCTCTAATTTGGGGGGAGAAGTCTTCTGGGGCTGTGCCTTTTGGGACAATGATTGCTTTGGTTTGCCTGTGGTTTGGAATATCAGTGCCCTTGGTCTTTGTGGGTAGTTATTTGGGGTTCAAAAAGCCACCTGTTGAAGACCCTGTAAAGACGAACAAAATTCCCCGGCAGGTGCCAGAGCAGGCATGGTATATGAAACCAGTATTCTCTATACTGATTGGAGGCATTCTTCCATTTGGAGCTGTTTTCATCGAGCTGTTCTTTATCTTGACATCAATTTGGCTGAACCAGTTCTACTATATCTTCGGCTTCCTTTTCATCGTGTTTGTTATCCTTCTGATCACCTGTGCGGAGATAACAATCGTGCTATGCTACTTCCAGTTATGCAGTGAAGACTACCACTGGTGGTGGAGATCTTACCTGACCGCTGGCTCATCTGCTCTTTACCTTCTCCTCTACTCTGCCTTCTACTTCTTTACCAAGTTGGAGATTACAAAGTTTGTTTCGGGCATCCTTTACTTCGGGTACATGCTAATTGTTTCATATGCTTTCTTCGTCCTGACCGGAACAATTGGTTTCTACGCATGTTTCTGGTTTGTTCGAAAGATCTACTCCTCTGTGAAGATTGACTGA

Protein Analysis

644

Amino Acids

73.69

Weight (kDa)

8.11

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 61 - 600 1.7e-225 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 227, 854
AarI CACCTGC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 1459
AccB1I GGYRCC 2 cut(s) 1012, 1471
AccI GTMKAC 2 cut(s) 331, 1041
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 18, 1649, 1725
AclWI GGATC 3 cut(s) 20, 566, 829
AcsI RAATTY 5 cut(s) 277, 361, 856, 1269, 1458
AfaI GTAC 6 cut(s) 211, 396, 812, 1205, 1222, 1826
AfiI CCNNNNNNNGG 3 cut(s) 36, 961, 1128
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 7 cut(s) 295, 380, 493, 849, 1216, 1420, 1436
AjnI CCWGG 1 cut(s) 1264
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 5 cut(s) 326, 549, 946, 1541, 1555
AluI AGCT 5 cut(s) 326, 549, 946, 1541, 1555
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 4 cut(s) 572, 769, 1119, 1139
AlwI GGATC 3 cut(s) 20, 566, 829
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 2 cut(s) 97, 575
ApoI RAATTY 5 cut(s) 277, 361, 856, 1269, 1458
Asp700I GAANNNNTTC 1 cut(s) 1589
AsuC2I CCSGG 4 cut(s) 98, 99, 705, 1465
AsuHPI GGTGA 4 cut(s) 46, 275, 682, 1633
AsuII TTCGAA 1 cut(s) 1900
AvaI CYCGRG 2 cut(s) 97, 575
BaeGI GKGCMC 2 cut(s) 1015, 1389
BanI GGYRCC 2 cut(s) 1012, 1471
BbsI GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 2 cut(s) 440, 975
BceAI ACGGC 1 cut(s) 1265
BciT130I CCWGG 1 cut(s) 1266
BclI TGATCA 2 cut(s) 900, 1638
BcnI CCSGG 4 cut(s) 98, 99, 705, 1465
BcoDI GTCTC 4 cut(s) 572, 769, 1119, 1139
BfuAI ACCTGC 1 cut(s) 1459
BglII AGATCT 3 cut(s) 1062, 1712, 1905
Bme1390I CCNGG 5 cut(s) 98, 99, 705, 1266, 1465
BmeT110I CYCGRG 2 cut(s) 97, 575
BmiI GGNNCC 2 cut(s) 1014, 1473
BmrFI CCNGG 5 cut(s) 98, 99, 705, 1266, 1465
BmsI GCATC 2 cut(s) 803, 1818
BpiI GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
BplI GAGNNNNNCTC 2 cut(s) 1119, 1151
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 1900
BpuEI CTTGAG 2 cut(s) 565, 951
BpuMI CCSGG 4 cut(s) 98, 99, 705, 1465
BsaAI YACGTR 2 cut(s) 810, 1045
BsaBI GATNNNNATC 2 cut(s) 387, 1658
BsaI GGTCTC 1 cut(s) 1139
BsaJI CCNNGG 6 cut(s) 97, 259, 1126, 1146, 1389, 1463
BsaWI WCCGGW 1 cut(s) 1862
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 961, 1128
Bse1I ACTGG 8 cut(s) 130, 419, 845, 982, 1499, 1588, 1678, 1706
Bse3DI GCAATG 2 cut(s) 1077, 1097
Bse8I GATNNNNATC 2 cut(s) 387, 1658
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 6 cut(s) 97, 259, 1126, 1146, 1389, 1463
BseGI GGATG 3 cut(s) 451, 986, 1809
BseJI GATNNNNATC 2 cut(s) 387, 1658
BseLI CCNNNNNNNGG 3 cut(s) 36, 961, 1128
BseMI GCAATG 2 cut(s) 1077, 1097
BseMII CTCAG 2 cut(s) 445, 677
BseNI ACTGG 8 cut(s) 130, 419, 845, 982, 1499, 1588, 1678, 1706
BseRI GAGGAG 9 cut(s) 53, 56, 64, 320, 454, 533, 1180, 1742, 1903
BseSI GKGCMC 2 cut(s) 1015, 1389
BseYI CCCAGC 2 cut(s) 506, 1102
BsgI GTGCAG 2 cut(s) 255, 1179
Bsh1236I CGCG 1 cut(s) 114
BshNI GGYRCC 2 cut(s) 1012, 1471
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 2 cut(s) 97, 575
BsiSI CCGG 4 cut(s) 98, 704, 1465, 1863
BslFI GGGAC 5 cut(s) 52, 438, 818, 1063, 1357
BslI CCNNNNNNNGG 3 cut(s) 36, 961, 1128
BsmAI GTCTC 4 cut(s) 572, 769, 1119, 1139
BsmFI GGGAC 5 cut(s) 52, 438, 818, 1063, 1357
BsmI GAATGC 2 cut(s) 1303, 1524
Bso31I GGTCTC 1 cut(s) 1139
BsoBI CYCGRG 2 cut(s) 97, 575
Bsp119I TTCGAA 1 cut(s) 1900
Bsp1286I GDGCHC 3 cut(s) 63, 1015, 1389
Bsp1407I TGTACA 1 cut(s) 1203
Bsp19I CCATGG 1 cut(s) 1146
BspACI CCGC 3 cut(s) 18, 1649, 1725
BspCNI CTCAG 2 cut(s) 444, 676
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 4 cut(s) 631, 819, 903, 1137
BspLI GGNNCC 2 cut(s) 1014, 1473
BspMI ACCTGC 1 cut(s) 1459
BspPI GGATC 3 cut(s) 20, 566, 829
BspT104I TTCGAA 1 cut(s) 1900
BspT107I GGYRCC 2 cut(s) 1012, 1471
BspTNI GGTCTC 1 cut(s) 1139
BsrDI GCAATG 2 cut(s) 1077, 1097
BsrGI TGTACA 1 cut(s) 1203
BsrI ACTGG 8 cut(s) 130, 419, 845, 982, 1499, 1588, 1678, 1706
BssECI CCNNGG 6 cut(s) 97, 259, 1126, 1146, 1389, 1463
BssT1I CCWWGG 2 cut(s) 1146, 1389
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 3 cut(s) 58, 233, 623
Bst6I CTCTTC 1 cut(s) 1226
BstAUI TGTACA 1 cut(s) 1203
BstBAI YACGTR 2 cut(s) 810, 1045
BstBI TTCGAA 1 cut(s) 1900
BstC8I GCNNGC 3 cut(s) 1183, 1482, 1729
BstDEI CTNAG 2 cut(s) 431, 663
BstDSI CCRYGG 2 cut(s) 259, 1146
BstF5I GGATG 3 cut(s) 451, 986, 1809
BstFNI CGCG 1 cut(s) 114
BstMAI GTCTC 4 cut(s) 572, 769, 1119, 1139
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 1 cut(s) 1266
BstNSI RCATGY 3 cut(s) 678, 1831, 1887
BstSCI CCNGG 5 cut(s) 96, 97, 703, 1264, 1463
BstSLI GKGCMC 2 cut(s) 1015, 1389
BstSNI TACGTA 1 cut(s) 1045
BstUI CGCG 1 cut(s) 114
BstV2I GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
BstX2I RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
BstYI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
BtgI CCRYGG 2 cut(s) 259, 1146
BtsCI GGATG 3 cut(s) 451, 986, 1809
BtsI GCAGTG 3 cut(s) 82, 718, 1693
BtsIMutI CAGTG 8 cut(s) 82, 123, 238, 718, 838, 1389, 1693, 1699
BveI ACCTGC 1 cut(s) 1459
Cac8I GCNNGC 3 cut(s) 1183, 1482, 1729
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 4 cut(s) 631, 819, 903, 1137
Cfr9I CCCGGG 1 cut(s) 97
CseI GACGC 2 cut(s) 181, 353
Csp6I GTAC 6 cut(s) 210, 395, 811, 1204, 1221, 1825
CviQI GTAC 6 cut(s) 210, 395, 811, 1204, 1221, 1825
DdeI CTNAG 2 cut(s) 431, 663
Eam1104I CTCTTC 1 cut(s) 1226
EarI CTCTTC 1 cut(s) 1226
EciI GGCGGA 1 cut(s) 7
Eco105I TACGTA 1 cut(s) 1045
Eco130I CCWWGG 2 cut(s) 1146, 1389
Eco31I GGTCTC 1 cut(s) 1139
Eco88I CYCGRG 2 cut(s) 97, 575
EcoRI GAATTC 2 cut(s) 277, 1269
EcoRII CCWGG 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 1146, 1389
ErhI CCWWGG 2 cut(s) 1146, 1389
FalI AAGNNNNNCTT 2 cut(s) 1238, 1270
FaqI GGGAC 5 cut(s) 52, 438, 818, 1063, 1357
FauNDI CATATG 3 cut(s) 184, 757, 1843
FbaI TGATCA 2 cut(s) 900, 1638
FblI GTMKAC 2 cut(s) 331, 1041
FokI GGATG 3 cut(s) 458, 993, 1796
GsaI CCCAGC 2 cut(s) 510, 1106
GsuI CTGGAG 1 cut(s) 147
HapII CCGG 4 cut(s) 98, 704, 1465, 1863
HgaI GACGC 2 cut(s) 181, 353
HincII GTYRAC 2 cut(s) 332, 730
HindII GTYRAC 2 cut(s) 332, 730
HinfI GANTC 4 cut(s) 350, 477, 489, 584
HpaII CCGG 4 cut(s) 98, 704, 1465, 1863
HphI GGTGA 4 cut(s) 46, 275, 682, 1633
Hpy166II GTNNAC 4 cut(s) 151, 332, 730, 1042
Hpy188I TCNGA 5 cut(s) 434, 554, 834, 1062, 1638
Hpy188III TCNNGA 9 cut(s) 341, 575, 632, 820, 904, 968, 1138, 1567, 1858
Hpy8I GTNNAC 4 cut(s) 151, 332, 730, 1042
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 7 cut(s) 61, 425, 824, 1128, 1643, 1757, 1774
HpyCH4III ACNGT 3 cut(s) 58, 233, 623
HpyCH4IV ACGT 2 cut(s) 809, 1044
HpyCH4V TGCA 7 cut(s) 236, 356, 678, 1070, 1097, 1196, 1686
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 431, 663
HpySE526I ACGT 2 cut(s) 809, 1044
Ksp22I TGATCA 2 cut(s) 900, 1638
LmnI GCTCC 4 cut(s) 66, 112, 307, 1538
LweI GCATC 2 cut(s) 803, 1818
MaeII ACGT 2 cut(s) 809, 1044
MaeIII GTNAC 3 cut(s) 610, 670, 1081
MfeI CAATTG 1 cut(s) 1869
MflI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
MhlI GDGCHC 3 cut(s) 63, 1015, 1389
MmeI TCCRAC 3 cut(s) 466, 1146, 1764
MroXI GAANNNNTTC 1 cut(s) 1589
MseI TTAA 6 cut(s) 200, 366, 534, 771, 993, 1244
MslI CAYNNNNRTG 1 cut(s) 799
MspA1I CMGCKG 2 cut(s) 946, 1727
MspI CCGG 4 cut(s) 98, 704, 1465, 1863
MspR9I CCNGG 5 cut(s) 98, 99, 705, 1266, 1465
MunI CAATTG 1 cut(s) 1869
Mva1269I GAATGC 2 cut(s) 1303, 1524
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 4 cut(s) 98, 99, 705, 1465
NcoI CCATGG 1 cut(s) 1146
NdeI CATATG 3 cut(s) 184, 757, 1843
NlaIV GGNNCC 2 cut(s) 1014, 1473
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 3 cut(s) 678, 1831, 1887
NspV TTCGAA 1 cut(s) 1900
PagI TCATGA 4 cut(s) 631, 819, 903, 1137
PaqCI CACCTGC 1 cut(s) 1459
PctI GAATGC 2 cut(s) 1303, 1524
PdmI GAANNNNTTC 1 cut(s) 1589
PfeI GAWTC 4 cut(s) 350, 477, 489, 584
PfoI TCCNGGA 1 cut(s) 1264
Ppu21I YACGTR 2 cut(s) 810, 1045
PsiI TTATAA 2 cut(s) 227, 854
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 2 cut(s) 506, 1102
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 2 cut(s) 1014, 1473
PsrI GAACNNNNNNTAC 4 cut(s) 1196, 1228, 1577, 1609
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 6 cut(s) 211, 396, 812, 1205, 1222, 1826
RsaNI GTAC 6 cut(s) 210, 395, 811, 1204, 1221, 1825
RseI CAYNNNNRTG 1 cut(s) 799
SalI GTCGAC 1 cut(s) 330
SaqAI TTAA 6 cut(s) 200, 366, 534, 771, 993, 1244
ScrFI CCNGG 5 cut(s) 98, 99, 705, 1266, 1465
SduI GDGCHC 3 cut(s) 63, 1015, 1389
SfaNI GCATC 2 cut(s) 803, 1818
SfuI TTCGAA 1 cut(s) 1900
SmaI CCCGGG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 799
SmlI CTYRAG 2 cut(s) 544, 966
SmoI CTYRAG 2 cut(s) 544, 966
SnaBI TACGTA 1 cut(s) 1045
SsiI CCGC 3 cut(s) 18, 1649, 1725
SspI AATATT 2 cut(s) 206, 527
StyD4I CCNGG 5 cut(s) 96, 97, 703, 1264, 1463
StyI CCWWGG 2 cut(s) 1146, 1389
TaaI ACNGT 3 cut(s) 58, 233, 623
TaiI ACGT 2 cut(s) 812, 1047
TaqI TCGA 5 cut(s) 331, 391, 592, 1551, 1900
TatI WGTACW 3 cut(s) 209, 394, 1203
TfiI GAWTC 4 cut(s) 350, 477, 489, 584
Tru1I TTAA 6 cut(s) 200, 366, 534, 771, 993, 1244
Tru9I TTAA 6 cut(s) 200, 366, 534, 771, 993, 1244
TscAI CASTG 8 cut(s) 89, 130, 238, 718, 845, 1389, 1693, 1706
TseFI GTSAC 1 cut(s) 670
Tsp45I GTSAC 1 cut(s) 670
TspGWI ACGGA 1 cut(s) 248
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 8 cut(s) 89, 130, 238, 718, 845, 1389, 1693, 1706
XapI RAATTY 5 cut(s) 277, 361, 856, 1269, 1458
XceI RCATGY 3 cut(s) 678, 1831, 1887
XcmI CCANNNNNNNNNTGG 1 cut(s) 1482
XmaI CCCGGG 1 cut(s) 97
XmiI GTMKAC 2 cut(s) 331, 1041
XmnI GAANNNNTTC 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.