Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009772

Physical Location & Seq

Genomic Coordinates Forward (+)

24100313 .. 24104904

Gene Structure 4592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGAGGGAGGAGCAATCCTGTGTAGTAGCTTGTCGAGTAAAGCTTGATGCTGAATCTGCAAGAAATTTTAAGGAAAAAATTGATGATAAATACCGTGTACAAATGATTTTGGATAACCTTCCAGTTGCTGTCCTCAGACAAAGGCGGGATGGAAGTCCGTCCACAACTTACGAACATGGATTCAGTGTTGGGTTCAAGGGAAATTATGCTGGGAGTAAAGAGGAGAAGTATTTTATCAACAATCACTTGAGCTTCAGAGTTATGTATCACAAAGATCCTGACACTGACTCTGCCCGAATTGTTGGGTTCGAGGTTACTCCAAACAGTATCAATCATGAATATAAGGAATGGGATGAGCAAAATACTCAGTTGGTAACATGCAATAAAGACACAAAAAATTTACCTCCTGGAAGCACTATTCCACAAGAAGTTGACAAAGATAAGGAGATTGTATTCACATTTGATGTTTCCTTTAAGGAAAGTGAAATCAAATGGGCATCTCGTTGGGACACGTACCTCCTCATGAATGACGATCAGATCCACTGGTTCTCAATTATAAACTCTCTGATGATTGTCCTCTTTTTATCTGGTATGGTGGCTATGATCATGATGAGGACTTTGTACAGAGATATCGCCAACTATAATCAGTTGGACACGCAAGATGAGGCTCAAGAAGAAACTGGATGGAAACTTGTGAATGGAGATGTTTTCAGGGCCCCAATCAATTCCAATTTACTTTGTGTCTACGTTGGTACAGGGGTTCAGATCTTTGGAATGACACTTGTAACTATGATATTTGCTTTGCTTGGCTTCCTGTCTCCTTCCAACCGAGGGGGTCTTATGACGGCCATGGTTTTGTTGTGGGTTTTCATGGGCTTATTTGCTGGTTATTCTTCTGCACGATTGTACAAGATGTTCAAGGGTACAGAGTGGAAGAGGAATACTTTGAAGACTGCATTTATGTTCCCAGGAATTCTGTTTGCTGTCTTCTTTGTGCTAAATGCCCTAATTTGGGGGGAGAAATCTTCTGGAGCCGTGCCCTTTGGGACAATGATTGCTTTGGTTTGCTTATGGTTTGGAATTTCAGTGCCTTTGGTCTTTGTGGGTAGTTATTTAGGGTTCAAAAAGCCAGCTGTTGAAGACCCTGTAAAGACTAACAAAATTCCACGGCAGGTACCAGAACAGGCATGGTATATGAAACCAGTCTTCTCAATACTTATTGGAGGCATCCTTCCATTTGGAGCTGTTTTCATTGAGCTGTTCTTTATCTTGACATCAATTTGGCTGAACCAGTTCTATTACATATTCGGGTTCCTTTTCATCGTTTTTGTCATCCTTTTAATCACTTGTGCGGAGATAACGATGGTGCTCTGCTACTTCCAGTTGTGCAGTGAAGATTACCACTGGTGGTGGAGATCATACCTGACCGCAGGCTCGTCTGCCCTTTACCTTCTCCTCTACTCTGCCTTCTACTTTTTTACCAAGTTGGAGATCACTAAGTTTGTTTCAGGCATCCTTTACTTTGGGTACATGTTGATCGTTTCGTATGCTTTCTTTGTCTTGACCGGAACTATTGGTTTCTATGCATGCTTCTGGTTTGTTCGGAAGATTTACGCCTCTGTGAAGATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006873 GO:0006875 GO:0006878 GO:0006882 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019725 GO:0030003 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055069 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0072503 GO:0072507 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

544

Amino Acids

62.64

Weight (kDa)

6.99

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	1 - 501	3.4e-208	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55130 AT3G13772
fragaria_vesca	FvH4_6g33330 FvH4_6g33330
malus_domestica	MD09G1193600.v1.1 MD17G1174300.v1.1
prunus_persica	Prupe.3G050000_v2.0.a1 Prupe.3G050000_v2.0.a1
pyrus_communis	pycom09g11010 pycom17g17840
rosa_chinensis	RchiOBHm_Chr1g0327081 RchiOBHm_Chr2g0143181
rosa_laevigata	RLG00000020011
rosa_multiflora	Rmu_sc0008800.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102070
rosa_rugosa	Rorug02G0378900
rosa_samantha	Rh2AG431700 Rh2BG440300 Rh2CG417600 Rh2DG450500
rosa_wichuraiana	Rw2G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	1162
Acc65I	GGTACC	1 cut(s)	1174
AccB1I	GGYRCC	1 cut(s)	1174
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	3 cut(s)	145, 1352, 1428
AclWI	GGATC	2 cut(s)	269, 532
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	5 cut(s)	64, 397, 972, 1080, 1161
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	8 cut(s)	99, 515, 623, 754, 908, 925, 1176, 1529
AfiI	CCNNNNNNNGG	3 cut(s)	831, 1011, 1012
AflIII	ACRYGT	2 cut(s)	510, 1530
AgsI	TTSAA	5 cut(s)	196, 919, 949, 1123, 1139
AjnI	CCWGG	2 cut(s)	406, 967
AluBI	AGCT	6 cut(s)	29, 43, 252, 1133, 1244, 1258
AluI	AGCT	6 cut(s)	29, 43, 252, 1133, 1244, 1258
Alw21I	GWGCWC	1 cut(s)	1371
Alw26I	GTCTC	1 cut(s)	822
AlwI	GGATC	2 cut(s)	269, 532
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	714, 846
ApaI	GGGCCC	1 cut(s)	718
ApoI	RAATTY	5 cut(s)	64, 397, 972, 1080, 1161
Asp700I	GAANNNNTTC	1 cut(s)	1292
Asp718I	GGTACC	1 cut(s)	1174
AspS9I	GGNCC	2 cut(s)	714, 715
BaeGI	GKGCMC	2 cut(s)	718, 1041
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BanI	GGYRCC	1 cut(s)	1174
BanII	GRGCYC	1 cut(s)	718
BbsI	GAAGAC	4 cut(s)	956, 979, 1146, 1198
Bbv12I	GWGCWC	1 cut(s)	1371
BccI	CCATC	3 cut(s)	143, 678, 1357
BceAI	ACGGC	3 cut(s)	861, 1019, 1184
BciT130I	CCWGG	2 cut(s)	408, 969
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	1162
BglII	AGATCT	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	408, 969
BmgT120I	GGNCC	2 cut(s)	714, 715
BmiI	GGNNCC	5 cut(s)	716, 717, 1033, 1176, 1313
BmrFI	CCNGG	2 cut(s)	408, 969
BmsI	GCATC	4 cut(s)	37, 506, 1236, 1521
BpiI	GAAGAC	4 cut(s)	956, 979, 1146, 1198
BpmI	CTGGAG	1 cut(s)	1050
BpuEI	CTTGAG	2 cut(s)	268, 654
BsaAI	YACGTR	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	829, 849, 967, 1166
BsaWI	WCCGGW	1 cut(s)	1565
Bsc4I	CCNNNNNNNGG	3 cut(s)	831, 1011, 1012
Bse1I	ACTGG	7 cut(s)	122, 548, 685, 1202, 1291, 1381, 1409
BseBI	CCWGG	2 cut(s)	408, 969
BseDI	CCNNGG	4 cut(s)	829, 849, 967, 1166
BseGI	GGATG	6 cut(s)	154, 358, 689, 1227, 1332, 1512
BseLI	CCNNNNNNNGG	3 cut(s)	831, 1011, 1012
BseMII	CTCAG	2 cut(s)	148, 380
BseNI	ACTGG	7 cut(s)	122, 548, 685, 1202, 1291, 1381, 1409
BseRI	GAGGAG	4 cut(s)	23, 236, 509, 1445
BseSI	GKGCMC	2 cut(s)	718, 1041
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	2 cut(s)	882, 1408
BshFI	GGCC	2 cut(s)	716, 848
BshNI	GGYRCC	1 cut(s)	1174
BsiHKAI	GWGCWC	1 cut(s)	1371
BsiSI	CCGG	1 cut(s)	1566
BslFI	GGGAC	2 cut(s)	521, 1060
BslI	CCNNNNNNNGG	3 cut(s)	831, 1011, 1012
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	521, 1060
BsnI	GGCC	2 cut(s)	716, 848
Bsp120I	GGGCCC	1 cut(s)	714
Bsp1286I	GDGCHC	3 cut(s)	718, 1041, 1371
Bsp1407I	TGTACA	3 cut(s)	97, 621, 906
Bsp143I	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	3 cut(s)	145, 1352, 1428
BspANI	GGCC	2 cut(s)	716, 848
BspCNI	CTCAG	2 cut(s)	147, 379
BspHI	TCATGA	3 cut(s)	334, 522, 606
BspLI	GGNNCC	5 cut(s)	716, 717, 1033, 1176, 1313
BspMI	ACCTGC	1 cut(s)	1162
BspPI	GGATC	2 cut(s)	269, 532
BspT107I	GGYRCC	1 cut(s)	1174
BsrGI	TGTACA	3 cut(s)	97, 621, 906
BsrI	ACTGG	7 cut(s)	122, 548, 685, 1202, 1291, 1381, 1409
BssECI	CCNNGG	4 cut(s)	829, 849, 967, 1166
BssMI	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	408, 969
Bst4CI	ACNGT	2 cut(s)	95, 326
Bst6I	CTCTTC	1 cut(s)	929
BstAUI	TGTACA	3 cut(s)	97, 621, 906
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	1131, 1432, 1588
BstDEI	CTNAG	3 cut(s)	134, 366, 1497
BstDSI	CCRYGG	2 cut(s)	849, 1166
BstF5I	GGATG	6 cut(s)	154, 358, 689, 1227, 1332, 1512
BstKTI	GATC	8 cut(s)	277, 535, 540, 606, 768, 1418, 1494, 1539
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	408, 969
BstNSI	RCATGY	3 cut(s)	381, 1534, 1590
BstSCI	CCNGG	2 cut(s)	406, 967
BstSLI	GKGCMC	2 cut(s)	718, 1041
BstV2I	GAAGAC	4 cut(s)	956, 979, 1146, 1198
BstX2I	RGATCY	3 cut(s)	274, 537, 765
BstYI	RGATCY	3 cut(s)	274, 537, 765
BsuRI	GGCC	2 cut(s)	716, 848
BtgI	CCRYGG	2 cut(s)	849, 1166
BtsCI	GGATG	6 cut(s)	154, 358, 689, 1227, 1332, 1512
BtsI	GCAGTG	1 cut(s)	1396
BtsIMutI	CAGTG	6 cut(s)	190, 282, 541, 1092, 1396, 1402
BveI	ACCTGC	1 cut(s)	1162
Cac8I	GCNNGC	3 cut(s)	1131, 1432, 1588
CaiI	CAGNNNCTG	1 cut(s)	128
CciI	TCATGA	3 cut(s)	334, 522, 606
Cfr13I	GGNCC	2 cut(s)	714, 715
Csp6I	GTAC	8 cut(s)	98, 514, 622, 753, 907, 924, 1175, 1528
CviQI	GTAC	8 cut(s)	98, 514, 622, 753, 907, 924, 1175, 1528
DdeI	CTNAG	3 cut(s)	134, 366, 1497
DpnI	GATC	8 cut(s)	276, 534, 539, 605, 767, 1417, 1493, 1538
DpnII	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	714, 715
EcoRI	GAATTC	1 cut(s)	972
EcoRII	CCWGG	2 cut(s)	406, 967
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	849
EcoT22I	ATGCAT	1 cut(s)	1588
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	849
FaqI	GGGAC	2 cut(s)	521, 1060
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	744
FokI	GGATG	6 cut(s)	161, 365, 696, 1214, 1319, 1499
FriOI	GRGCYC	1 cut(s)	718
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	716, 848
HapII	CCGG	1 cut(s)	1566
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	53, 180, 287
HpaII	CCGG	1 cut(s)	1566
Hpy166II	GTNNAC	4 cut(s)	98, 162, 433, 745
Hpy188I	TCNGA	6 cut(s)	137, 257, 537, 567, 765, 1605
Hpy188III	TCNNGA	8 cut(s)	278, 335, 523, 607, 671, 1029, 1270, 1561
Hpy8I	GTNNAC	4 cut(s)	98, 162, 433, 745
HpyAV	CCTTC	5 cut(s)	128, 831, 1241, 1460, 1477
HpyCH4III	ACNGT	2 cut(s)	95, 326
HpyCH4IV	ACGT	2 cut(s)	512, 747
HpyCH4V	TGCA	6 cut(s)	59, 381, 899, 956, 1389, 1586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	134, 366, 1497
HpySE526I	ACGT	2 cut(s)	512, 747
KpnI	GGTACC	1 cut(s)	1178
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
LmnI	GCTCC	3 cut(s)	10, 1031, 1241
LweI	GCATC	4 cut(s)	37, 506, 1236, 1521
MaeII	ACGT	2 cut(s)	512, 747
MaeIII	GTNAC	3 cut(s)	313, 373, 784
MalI	GATC	8 cut(s)	276, 534, 539, 605, 767, 1417, 1493, 1538
MboI	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
MflI	RGATCY	3 cut(s)	274, 537, 765
MhlI	GDGCHC	3 cut(s)	718, 1041, 1371
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	3 cut(s)	630, 849, 1467
Mph1103I	ATGCAT	1 cut(s)	1588
MroXI	GAANNNNTTC	1 cut(s)	1292
MseI	TTAA	3 cut(s)	69, 474, 1340
MspA1I	CMGCKG	1 cut(s)	1133
MspI	CCGG	1 cut(s)	1566
MspR9I	CCNGG	2 cut(s)	408, 969
MvaI	CCWGG	2 cut(s)	408, 969
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
NlaIV	GGNNCC	5 cut(s)	716, 717, 1033, 1176, 1313
NsiI	ATGCAT	1 cut(s)	1588
NspI	RCATGY	3 cut(s)	381, 1534, 1590
PaeI	GCATGC	1 cut(s)	1590
PagI	TCATGA	3 cut(s)	334, 522, 606
PciI	ACATGT	1 cut(s)	1530
PdmI	GAANNNNTTC	1 cut(s)	1292
PfeI	GAWTC	2 cut(s)	53, 180
PfoI	TCCNGGA	1 cut(s)	406
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	513
PscI	ACATGT	1 cut(s)	1530
PsiI	TTATAA	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	406, 967
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	406, 967
PspN4I	GGNNCC	5 cut(s)	716, 717, 1033, 1176, 1313
PspOMI	GGGCCC	1 cut(s)	714
PspPI	GGNCC	2 cut(s)	714, 715
PsrI	GAACNNNNNNTAC	2 cut(s)	899, 931
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	274, 537, 765
PvuII	CAGCTG	1 cut(s)	1133
RsaI	GTAC	8 cut(s)	99, 515, 623, 754, 908, 925, 1176, 1529
RsaNI	GTAC	8 cut(s)	98, 514, 622, 753, 907, 924, 1175, 1528
SaqAI	TTAA	3 cut(s)	69, 474, 1340
Sau3AI	GATC	8 cut(s)	274, 532, 537, 603, 765, 1415, 1491, 1536
Sau96I	GGNCC	2 cut(s)	714, 715
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	408, 969
SduI	GDGCHC	3 cut(s)	718, 1041, 1371
SfaNI	GCATC	4 cut(s)	37, 506, 1236, 1521
SmlI	CTYRAG	2 cut(s)	247, 669
SmoI	CTYRAG	2 cut(s)	247, 669
SphI	GCATGC	1 cut(s)	1590
SsiI	CCGC	3 cut(s)	145, 1352, 1428
StyD4I	CCNGG	2 cut(s)	406, 967
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	95, 326
TaiI	ACGT	2 cut(s)	515, 750
TaqI	TCGA	2 cut(s)	34, 309
TatI	WGTACW	3 cut(s)	97, 621, 906
TfiI	GAWTC	2 cut(s)	53, 180
Tru1I	TTAA	3 cut(s)	69, 474, 1340
Tru9I	TTAA	3 cut(s)	69, 474, 1340
TscAI	CASTG	6 cut(s)	190, 289, 548, 1092, 1396, 1409
TspDTI	ATGAA	6 cut(s)	351, 539, 859, 1211, 1240, 1309
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	6 cut(s)	190, 289, 548, 1092, 1396, 1409
XapI	RAATTY	5 cut(s)	64, 397, 972, 1080, 1161
XceI	RCATGY	3 cut(s)	381, 1534, 1590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1185
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	1292
Zsp2I	ATGCAT	1 cut(s)	1588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.