Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009772

Physical Location & Seq

Genomic Coordinates Reverse (-)

15696387 .. 15696854

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCGGCAGATCTCCGGCTGTTCCTCCTTATTAATAATCATCGTGCTCCCCCTCATCTCCTCCGCAGCCCACAACTTCTCTCTTCCCGGCGTTGCTCCCCGTGATTTCCACACTGCCACTGGAGATCCCCTTTCTATCGAAGTGAACAAATTGTCATCTACTAAGACACAACACACATATGACTACTACTACTTAAGTTATTGTAACACAGAGATTATAAAAAGTGCAGAAAATCTGGGGGAGGTTCTTCGTGGTGATCAAATTGAAAATTCTGTATATGCTTTCAAAAAAAGAACTGCTTCTTCGTCTTCTTCAAGTTCAAATCCAGGGTTTTTCAACCCCTCATCATCTTCCTCTAAAATCATGGTCATAGCAGAGCTTAATTTCAATTGTGAGAGAGACGGGGGAATCAAAGTAACTGGAAGGAGTTCTAGAGAAAAGATGAGAGAGAGAGAGAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006873 GO:0006875 GO:0006878 GO:0006882 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019725 GO:0030003 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055069 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0072503 GO:0072507 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

155

Amino Acids

16.99

Weight (kDa)

8.45

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	60 - 101	1.3e-06	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55130 AT3G13772
fragaria_vesca	FvH4_6g33330 FvH4_6g33330
malus_domestica	MD09G1193600.v1.1 MD17G1174300.v1.1
prunus_persica	Prupe.3G050000_v2.0.a1 Prupe.3G050000_v2.0.a1
pyrus_communis	pycom09g11010 pycom17g17840
rosa_chinensis	RchiOBHm_Chr1g0327081 RchiOBHm_Chr2g0143181
rosa_laevigata	RLG00000020011
rosa_multiflora	Rmu_sc0008800.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102070
rosa_rugosa	Rorug02G0378900
rosa_samantha	Rh2AG431700 Rh2BG440300 Rh2CG417600 Rh2DG450500
rosa_wichuraiana	Rw2G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	271
AflII	CTTAAG	1 cut(s)	196
AgsI	TTSAA	6 cut(s)	269, 289, 318, 324, 340, 391
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	35
Asp700I	GAANNNNTTC	2 cut(s)	301, 430
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	196
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	90, 330
BmrFI	CCNGG	2 cut(s)	90, 330
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	127, 427
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	127, 427
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	18, 90
BsmAI	GTCTC	1 cut(s)	396
BsmBI	CGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	12, 127, 259
BspACI	CCGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	127, 427
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	12, 127, 259
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	15, 130, 262
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	3 cut(s)	12, 127, 259
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	88, 328
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	12, 127
BstYI	RGATCY	2 cut(s)	12, 127
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 120
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	3 cut(s)	21, 71, 382
CviKI_1	RGCY	3 cut(s)	21, 71, 382
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	3 cut(s)	14, 129, 261
DpnII	GATC	3 cut(s)	12, 127, 259
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	1 cut(s)	370
FaiI	YATR	7 cut(s)	181, 183, 221, 280, 282, 368, 374
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	2 cut(s)	18, 90
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	2 cut(s)	18, 90
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	12, 127, 259
LmnI	GCTCC	2 cut(s)	54, 103
LpnPI	CCDG	7 cut(s)	31, 103, 108, 224, 315, 342, 408
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	206, 418
MalI	GATC	3 cut(s)	14, 129, 261
MboI	GATC	3 cut(s)	12, 127, 259
MboII	GAAGA	6 cut(s)	77, 242, 297, 303, 306, 345
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	2 cut(s)	12, 127
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	5 cut(s)	152, 264, 271, 385, 391
MnlI	CCTC	6 cut(s)	37, 65, 73, 238, 355, 367
MroXI	GAANNNNTTC	2 cut(s)	301, 430
MseI	TTAA	3 cut(s)	35, 197, 384
MslI	CAYNNNNRTG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	2 cut(s)	18, 90
MspR9I	CCNGG	2 cut(s)	90, 330
MunI	CAATTG	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	3 cut(s)	12, 127, 259
NlaIII	CATG	1 cut(s)	370
PdmI	GAANNNNTTC	2 cut(s)	301, 430
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	12, 127
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	35, 197, 384
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	3 cut(s)	12, 127, 259
ScrFI	CCNGG	2 cut(s)	90, 330
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	2 cut(s)	249, 384
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	5 cut(s)	152, 264, 271, 385, 391
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	88, 328
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	152, 264, 271, 385, 391
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	3 cut(s)	35, 197, 384
Tru9I	TTAA	3 cut(s)	35, 197, 384
TscAI	CASTG	2 cut(s)	121, 127
TseI	GCWGC	1 cut(s)	68
TspRI	CASTG	2 cut(s)	121, 127
Vha464I	CTTAAG	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	1 cut(s)	271
XbaI	TCTAGA	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmnI	GAANNNNTTC	2 cut(s)	301, 430
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.