RLG00000020011
ERF Family

Transmembrane 9 superfamily member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
59989366 .. 59993369
4004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020011

Sequence Viewer

Length: 1707 bp
ATGGCGCTGAATCGTTGTGGGTTCGTCTCTGTTTGGACTGATACTGGGTTGGATCTGCGGTTTTGGTTCAAAATGAGGGAGGAGCAATCCTGTGTAGTAGCTTGTCGAGTAAAGCTTGATGCTGAATCTGCAAGAAATTTTAAGGAAAAAATTGATGATAAATACCGAGTACAAATGATTTTGGATAACCTTCCAGTTGCTGTCCTCAGACAAAGGCGGGATGGAAGTCCGTCCACAACTTACGAACATGGATTCAGTGTTGGGTTCAAGGGAAATTATGCTGGGAGTAAAGAGGAGAAGTATTTTATCAACAATCACTTGAGCTTCAGAGTTATGTATCACAAAGATCCTGAGACTGACTCTGCACGAATTGTTGGGTTCGAGGTTACTCCAAACAGTATCAATCATGAATATAAGGAATGGGATGAGCAAAATACTCAGTTGGTAACATGCAATAAAGACACAAAAAATTTACCTCCTGGAAGCACTGTTCCACAAGAAGTTGACAAAGATAAGGAGATTGTATTCACATTTGATGTTTCCTTTAAGGAAAGTGAAATCAAATGGGCATCTCGTTGGGACACGTACCTCCTCATGAATGACGATCAGATCCACTGGTTCTCAATTATAAACTCTCTGATGATTGTCCTCTTTTTATCTGGTATGGTGGCTATGATCATGATGAGGACTTTGTACAGAGATATCGCCAACTATAATCAGTTGGACACGCAAGATGAGGCTCAAGAAGAAACTGGATGGAAACTTGTGAATGGAGATGTTTTCAGGGCCCCAATCAATTCCAATTTACTTTGTGTCTACGTTGGTACCGGGGTTCAGATCTTTGGAATGACACTTGTAACTATGATATTTGCTTTGCTTGGCTTCCTGTCTCCTTCCAACCGAGGGGGTCTTATGACGGCCATGGTTTTGTTGTGGGTTTTCATGGGCTTATTTGCCGGTTATTCTTCTGCACGATTGTACAAGATGTTCAAGGGTACAGAGTGGAAGAGGAATACTTTAAAGACTGCATTTATGTTCCCAGGAATTCTGTTTGCTGTCTTCTTTGTGCTAAATGCCCTAATTTGGGGGGAGAAATCTTCTGGAGCCGTGCCTTTTGGGACAATGATTGCTTTGGTTTGCTTATGGTTTGGAATTTCAGTGCCTTTGGTCTTTGTGGGTAGTTATTTAGGGTTCAAAAAGCCAGCTGTTGAAGACCCTGTAAAGACTAACAAAATTCCACGGCAGGTACCAGAACAGGCATGGTATATGAAACCAGTCTTCTCAATACTTATTGGAGGCATCCTTCCATTTGGAGCTGTTTTCATTGAGCTGTTCTTTATCTTGACATCAATTTGGCTGAACCAGTTCTATTACATATTCGGGTTCCTTTTCATCGTTTTTGTCATCCTTTTAATCACTTGTGCGGAGATAACGATGGTGCTCTGCTACTTCCAGTTGTGCAGTGAAGATTACCACTGGTGGTGGAGATCATACCTGACCGCAGGCTCGTCTGCCCTTTACCTTCTCCTCTACTCTGCCTTCTACTTTTTTACCAAGTTGGAGATCACTAAGTTTGTTTCAGGCATCCTTTACTTTGGGTACATGTTGATCGTTTCGTATGCTTTCTTTGTCTTGACCGGAACTATTGGTTTCTATGCATGCTTCTGGTTTGTTCGGAAGATTTACGCCTCTGTGAAGATTGACTGA

Protein Analysis

569

Amino Acids

65.48

Weight (kDa)

7.48

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 20 - 525 1.7e-209 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
Acc36I ACCTGC 1 cut(s) 1234
Acc65I GGTACC 2 cut(s) 824, 1246
AccB1I GGYRCC 2 cut(s) 824, 1246
AccI GTMKAC 1 cut(s) 816
AciI CCGC 4 cut(s) 58, 217, 1424, 1500
AclWI GGATC 3 cut(s) 60, 341, 604
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 5 cut(s) 136, 469, 1044, 1152, 1233
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 8 cut(s) 171, 587, 695, 826, 980, 997, 1248, 1601
AfiI CCNNNNNNNGG 3 cut(s) 903, 1083, 1084
AflIII ACRYGT 2 cut(s) 582, 1602
AgsI TTSAA 5 cut(s) 70, 268, 991, 1195, 1211
AjnI CCWGG 2 cut(s) 478, 1039
AloI GAACNNNNNNTCC 2 cut(s) 474, 506
AluBI AGCT 6 cut(s) 101, 115, 324, 1205, 1316, 1330
AluI AGCT 6 cut(s) 101, 115, 324, 1205, 1316, 1330
Alw21I GWGCWC 1 cut(s) 1443
Alw26I GTCTC 3 cut(s) 31, 347, 894
AlwI GGATC 3 cut(s) 60, 341, 604
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 2 cut(s) 786, 918
ApaI GGGCCC 1 cut(s) 790
ApoI RAATTY 5 cut(s) 136, 469, 1044, 1152, 1233
Asp700I GAANNNNTTC 1 cut(s) 1364
Asp718I GGTACC 2 cut(s) 824, 1246
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 786, 787
AsuC2I CCSGG 1 cut(s) 829
BaeGI GKGCMC 1 cut(s) 790
BaeI ACNNNNGTAYC 4 cut(s) 808, 816, 841, 849
BanI GGYRCC 2 cut(s) 824, 1246
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 3 cut(s) 1051, 1218, 1270
Bbv12I GWGCWC 1 cut(s) 1443
BccI CCATC 3 cut(s) 215, 750, 1429
BceAI ACGGC 3 cut(s) 933, 1091, 1256
BciT130I CCWGG 2 cut(s) 480, 1041
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 31, 347, 894
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 837
Bme1390I CCNGG 3 cut(s) 480, 829, 1041
BmgT120I GGNCC 2 cut(s) 786, 787
BmiI GGNNCC 6 cut(s) 788, 789, 826, 1105, 1248, 1385
BmrFI CCNGG 3 cut(s) 480, 829, 1041
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 4 cut(s) 109, 578, 1308, 1593
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 3 cut(s) 1051, 1218, 1270
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 1 cut(s) 1122
BpuEI CTTGAG 2 cut(s) 340, 726
BpuMI CCSGG 1 cut(s) 829
BsaAI YACGTR 1 cut(s) 585
BsaJI CCNNGG 5 cut(s) 828, 901, 921, 1039, 1238
BsaWI WCCGGW 1 cut(s) 1637
Bsc4I CCNNNNNNNGG 3 cut(s) 903, 1083, 1084
Bse118I RCCGGY 1 cut(s) 956
Bse1I ACTGG 8 cut(s) 49, 194, 620, 757, 1274, 1363, 1453, 1481
BseBI CCWGG 2 cut(s) 480, 1041
BseDI CCNNGG 5 cut(s) 828, 901, 921, 1039, 1238
BseGI GGATG 6 cut(s) 226, 430, 761, 1299, 1404, 1584
BseLI CCNNNNNNNGG 3 cut(s) 903, 1083, 1084
BseMII CTCAG 3 cut(s) 220, 342, 452
BseNI ACTGG 8 cut(s) 49, 194, 620, 757, 1274, 1363, 1453, 1481
BseRI GAGGAG 4 cut(s) 95, 308, 581, 1517
BseSI GKGCMC 1 cut(s) 790
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 3 cut(s) 348, 954, 1480
BshFI GGCC 2 cut(s) 788, 920
BshNI GGYRCC 2 cut(s) 824, 1246
BsiHKAI GWGCWC 1 cut(s) 1443
BsiSI CCGG 3 cut(s) 828, 957, 1638
BslFI GGGAC 2 cut(s) 593, 1132
BslI CCNNNNNNNGG 3 cut(s) 903, 1083, 1084
BsmAI GTCTC 3 cut(s) 31, 347, 894
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 593, 1132
BsnI GGCC 2 cut(s) 788, 920
Bsp120I GGGCCC 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 790, 1443
Bsp1407I TGTACA 2 cut(s) 693, 978
Bsp143I GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 4 cut(s) 58, 217, 1424, 1500
BspANI GGCC 2 cut(s) 788, 920
BspCNI CTCAG 3 cut(s) 219, 343, 451
BspHI TCATGA 3 cut(s) 406, 594, 678
BspLI GGNNCC 6 cut(s) 788, 789, 826, 1105, 1248, 1385
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 3 cut(s) 60, 341, 604
BspT107I GGYRCC 2 cut(s) 824, 1246
BsrFI RCCGGY 1 cut(s) 956
BsrGI TGTACA 2 cut(s) 693, 978
BsrI ACTGG 8 cut(s) 49, 194, 620, 757, 1274, 1363, 1453, 1481
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 5 cut(s) 828, 901, 921, 1039, 1238
BssMI GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
BssT1I CCWWGG 1 cut(s) 921
Bst2UI CCWGG 2 cut(s) 480, 1041
Bst4CI ACNGT 2 cut(s) 398, 490
Bst6I CTCTTC 1 cut(s) 1001
BstAUI TGTACA 2 cut(s) 693, 978
BstBAI YACGTR 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 1203, 1504, 1660
BstDEI CTNAG 4 cut(s) 206, 351, 438, 1569
BstDSI CCRYGG 2 cut(s) 921, 1238
BstF5I GGATG 6 cut(s) 226, 430, 761, 1299, 1404, 1584
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 9 cut(s) 55, 349, 607, 612, 678, 840, 1490, 1566, 1611
BstMAI GTCTC 3 cut(s) 31, 347, 894
BstMBI GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 480, 1041
BstNSI RCATGY 3 cut(s) 453, 1606, 1662
BstSCI CCNGG 3 cut(s) 478, 827, 1039
BstSLI GKGCMC 1 cut(s) 790
BstV2I GAAGAC 3 cut(s) 1051, 1218, 1270
BstX2I RGATCY 4 cut(s) 52, 346, 609, 837
BstYI RGATCY 4 cut(s) 52, 346, 609, 837
BsuRI GGCC 2 cut(s) 788, 920
BtgI CCRYGG 2 cut(s) 921, 1238
BtsCI GGATG 6 cut(s) 226, 430, 761, 1299, 1404, 1584
BtsI GCAGTG 1 cut(s) 1468
BtsIMutI CAGTG 6 cut(s) 262, 486, 613, 1164, 1468, 1474
BveI ACCTGC 1 cut(s) 1234
Cac8I GCNNGC 3 cut(s) 1203, 1504, 1660
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 3 cut(s) 406, 594, 678
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 956
Cfr13I GGNCC 2 cut(s) 786, 787
Csp6I GTAC 8 cut(s) 170, 586, 694, 825, 979, 996, 1247, 1600
CviQI GTAC 8 cut(s) 170, 586, 694, 825, 979, 996, 1247, 1600
DdeI CTNAG 4 cut(s) 206, 351, 438, 1569
DpnI GATC 9 cut(s) 54, 348, 606, 611, 677, 839, 1489, 1565, 1610
DpnII GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
DraI TTTAAA 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 1001
Eco130I CCWWGG 1 cut(s) 921
Eco24I GRGCYC 1 cut(s) 790
Eco32I GATATC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 786, 787
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 2 cut(s) 478, 1039
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 921
EcoT22I ATGCAT 1 cut(s) 1660
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 921
Esp3I CGTCTC 1 cut(s) 31
FaqI GGGAC 2 cut(s) 593, 1132
FauI CCCGC 1 cut(s) 210
FbaI TGATCA 1 cut(s) 675
FblI GTMKAC 1 cut(s) 816
FokI GGATG 6 cut(s) 233, 437, 768, 1286, 1391, 1571
FriOI GRGCYC 1 cut(s) 790
GlaI GCGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 788, 920
HapII CCGG 3 cut(s) 828, 957, 1638
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 4 cut(s) 10, 125, 252, 359
HpaII CCGG 3 cut(s) 828, 957, 1638
Hpy166II GTNNAC 3 cut(s) 234, 505, 817
Hpy188I TCNGA 6 cut(s) 209, 329, 609, 639, 837, 1677
Hpy188III TCNNGA 8 cut(s) 350, 407, 595, 679, 743, 1101, 1342, 1633
Hpy8I GTNNAC 3 cut(s) 234, 505, 817
HpyAV CCTTC 5 cut(s) 200, 903, 1313, 1532, 1549
HpyCH4III ACNGT 2 cut(s) 398, 490
HpyCH4IV ACGT 2 cut(s) 584, 819
HpyCH4V TGCA 7 cut(s) 131, 365, 453, 971, 1028, 1461, 1658
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 4 cut(s) 206, 351, 438, 1569
HpySE526I ACGT 2 cut(s) 584, 819
HspAI GCGC 1 cut(s) 5
KpnI GGTACC 2 cut(s) 828, 1250
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
LmnI GCTCC 3 cut(s) 82, 1103, 1313
LweI GCATC 4 cut(s) 109, 578, 1308, 1593
MaeII ACGT 2 cut(s) 584, 819
MaeIII GTNAC 3 cut(s) 385, 445, 856
MalI GATC 9 cut(s) 54, 348, 606, 611, 677, 839, 1489, 1565, 1610
MboI GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
MboII GAAGA 9 cut(s) 758, 957, 1018, 1051, 1089, 1223, 1270, 1478, 1690
MflI RGATCY 4 cut(s) 52, 346, 609, 837
MhlI GDGCHC 2 cut(s) 790, 1443
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 4 cut(s) 30, 702, 921, 1539
Mph1103I ATGCAT 1 cut(s) 1660
MroXI GAANNNNTTC 1 cut(s) 1364
MseI TTAA 4 cut(s) 141, 546, 1019, 1412
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 3 cut(s) 828, 957, 1638
MspR9I CCNGG 3 cut(s) 480, 829, 1041
MvaI CCWGG 2 cut(s) 480, 1041
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 829
NcoI CCATGG 1 cut(s) 921
NdeII GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
NlaIV GGNNCC 6 cut(s) 788, 789, 826, 1105, 1248, 1385
NsiI ATGCAT 1 cut(s) 1660
NspI RCATGY 3 cut(s) 453, 1606, 1662
PaeI GCATGC 1 cut(s) 1662
PagI TCATGA 3 cut(s) 406, 594, 678
PciI ACATGT 1 cut(s) 1602
PdmI GAANNNNTTC 1 cut(s) 1364
PfeI GAWTC 3 cut(s) 10, 125, 252
PfoI TCCNGGA 1 cut(s) 478
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 585
PscI ACATGT 1 cut(s) 1602
PsiI TTATAA 1 cut(s) 629
Psp6I CCWGG 2 cut(s) 478, 1039
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 2 cut(s) 478, 1039
PspN4I GGNNCC 6 cut(s) 788, 789, 826, 1105, 1248, 1385
PspOMI GGGCCC 1 cut(s) 786
PspPI GGNCC 2 cut(s) 786, 787
PsrI GAACNNNNNNTAC 2 cut(s) 971, 1003
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 4 cut(s) 52, 346, 609, 837
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 8 cut(s) 171, 587, 695, 826, 980, 997, 1248, 1601
RsaNI GTAC 8 cut(s) 170, 586, 694, 825, 979, 996, 1247, 1600
SaqAI TTAA 4 cut(s) 141, 546, 1019, 1412
Sau3AI GATC 9 cut(s) 52, 346, 604, 609, 675, 837, 1487, 1563, 1608
Sau96I GGNCC 2 cut(s) 786, 787
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 480, 829, 1041
SduI GDGCHC 2 cut(s) 790, 1443
SfaNI GCATC 4 cut(s) 109, 578, 1308, 1593
SmlI CTYRAG 2 cut(s) 319, 741
SmoI CTYRAG 2 cut(s) 319, 741
SphI GCATGC 1 cut(s) 1662
SsiI CCGC 4 cut(s) 58, 217, 1424, 1500
StyD4I CCNGG 3 cut(s) 478, 827, 1039
StyI CCWWGG 1 cut(s) 921
TaaI ACNGT 2 cut(s) 398, 490
TaiI ACGT 2 cut(s) 587, 822
TaqI TCGA 2 cut(s) 106, 381
TatI WGTACW 3 cut(s) 169, 693, 978
TfiI GAWTC 3 cut(s) 10, 125, 252
Tru1I TTAA 4 cut(s) 141, 546, 1019, 1412
Tru9I TTAA 4 cut(s) 141, 546, 1019, 1412
TscAI CASTG 6 cut(s) 262, 493, 620, 1164, 1468, 1481
TspDTI ATGAA 6 cut(s) 423, 611, 931, 1283, 1312, 1381
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 6 cut(s) 262, 493, 620, 1164, 1468, 1481
XapI RAATTY 5 cut(s) 136, 469, 1044, 1152, 1233
XceI RCATGY 3 cut(s) 453, 1606, 1662
XcmI CCANNNNNNNNNTGG 1 cut(s) 1257
XmiI GTMKAC 1 cut(s) 816
XmnI GAANNNNTTC 1 cut(s) 1364
Zsp2I ATGCAT 1 cut(s) 1660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.