Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009772

Physical Location & Seq

Genomic Coordinates Forward (+)

48396303 .. 48398623

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGGGCCTTTTCTATACCGTTACCGGTTTCTCTAATAACCCCTGCTGCGACTGAAGCACTTGCACTTTGGCATGGGGTTAATTACTGTCAGTATTTGGGAGTGAAAAATGTGGTAGTAAAGGGGGATGCCCTTAATGTCCTTAATGGGTTGGGCACTCATGGATGGGACTTGAGCGAAATTGGAGGAGTTCTCGATGCAGTTAGAGTTATGATGAGGGAGTTTGAGCTTTTCTCATGGAAACATGTGAAGAAACGACTCAACCAAGTGGCTCACAGGCCTGCTCGGTCGGCATTGGCTTTGCCCCAGGCTATGTTTTGCAAGGAGGTTGGCCCTCCGTGGCTGCATGATTTAATTGATGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0006873 GO:0006875 GO:0006878 GO:0006882 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019725 GO:0030003 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055069 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0072503 GO:0072507 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

122

Amino Acids

13.4

Weight (kDa)

8.66

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	14 - 97	6e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55130 AT3G13772
fragaria_vesca	FvH4_6g33330 FvH4_6g33330
malus_domestica	MD09G1193600.v1.1 MD17G1174300.v1.1
prunus_persica	Prupe.3G050000_v2.0.a1 Prupe.3G050000_v2.0.a1
pyrus_communis	pycom09g11010 pycom17g17840
rosa_chinensis	RchiOBHm_Chr1g0327081 RchiOBHm_Chr2g0143181
rosa_laevigata	RLG00000020011
rosa_multiflora	Rmu_sc0008800.1_g000015
rosa_roxburghii	Rroxscaffold_2G00102070
rosa_rugosa	Rorug02G0378900
rosa_samantha	Rh2AG431700 Rh2BG440300 Rh2CG417600 Rh2DG450500
rosa_wichuraiana	Rw2G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	244
AgeI	ACCGGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AoxI	GGCC	3 cut(s)	6, 278, 331
ApeKI	GCWGC	2 cut(s)	47, 343
AsiGI	ACCGGT	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	6, 332
BaeGI	GKGCMC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	34, 330
BccI	CCATC	2 cut(s)	159, 353
BciT130I	CCWGG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	48, 344
BlsI	GCNGC	2 cut(s)	49, 345
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	6, 332
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	118, 187
BplI	GAGNNNNNCTC	4 cut(s)	177, 209, 218, 250
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	306, 338
BsaWI	WCCGGW	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	306, 338
BseGI	GGATG	2 cut(s)	133, 170
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	34, 330
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	8, 280, 333
BshTI	ACCGGT	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	8, 280, 333
Bsp1286I	GDGCHC	1 cut(s)	158
BspANI	GGCC	3 cut(s)	8, 280, 333
BspLI	GGNNCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	306, 338
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	21, 89
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	133, 170
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 290
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	34, 330
BsuRI	GGCC	3 cut(s)	8, 280, 333
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	133, 170
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	6, 332
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	5 cut(s)	74, 161, 237, 245, 347
CviJI	RGCY	8 cut(s)	8, 229, 272, 280, 299, 311, 333, 343
CviKI_1	RGCY	8 cut(s)	8, 229, 272, 280, 299, 311, 333, 343
Eco147I	AGGCCT	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	77, 164, 240, 248, 350
FaiI	YATR	8 cut(s)	17, 75, 162, 212, 238, 246, 314, 348
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	5 cut(s)	73, 160, 236, 244, 346
Fnu4HI	GCNGC	2 cut(s)	48, 344
FokI	GGATG	2 cut(s)	140, 177
Fsp4HI	GCNGC	2 cut(s)	48, 344
GluI	GCNGC	2 cut(s)	48, 344
HaeIII	GGCC	3 cut(s)	8, 280, 333
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	5 cut(s)	77, 164, 240, 248, 350
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	21, 89
HpyCH4V	TGCA	4 cut(s)	65, 200, 321, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 290
Hsp92II	CATG	5 cut(s)	77, 164, 240, 248, 350
LpnPI	CCDG	6 cut(s)	39, 57, 262, 293, 294, 320
Lsp1109I	GCAGC	2 cut(s)	34, 330
LweI	GCATC	2 cut(s)	118, 187
MaeIII	GTNAC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	82, 180, 354
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	179, 210, 319, 345
MseI	TTAA	4 cut(s)	81, 135, 144, 353
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	56, 290
NlaIII	CATG	5 cut(s)	77, 164, 240, 248, 350
NlaIV	GGNNCC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	280
PciI	ACATGT	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	49, 345
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	6, 332
SaqAI	TTAA	4 cut(s)	81, 135, 144, 353
SatI	GCNGC	2 cut(s)	48, 344
Sau96I	GGNCC	2 cut(s)	6, 332
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	2 cut(s)	231, 330
SfaNI	GCATC	2 cut(s)	118, 187
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	82, 180, 354
SseBI	AGGCCT	1 cut(s)	280
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	21, 89
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	82, 180, 354
Tru1I	TTAA	4 cut(s)	81, 135, 144, 353
Tru9I	TTAA	4 cut(s)	81, 135, 144, 353
TseI	GCWGC	2 cut(s)	47, 343
TspGWI	ACGGA	1 cut(s)	327
XceI	RCATGY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.