MD17G1174300.v1.1
ERF Family

Transmembrane 9 superfamily member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
19268965 .. 19273484
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1174300.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGGGTAGGAGGATCTCCGCCCCTACAACCACCACCAGAACTACCCTTATCTTTACCGTGCTCCTCCTCATCTCCTCGTCCCACTGCTTCTACCTCCCGGGCGTCGCTCCTCGCGATTTCCACATTGGAGATGAACTTTCTATCAAAGTGAACAAATTGTCATCTACAAAGACGCAACTCCCATATGACTTTTACTTCTTAAGATATTGTACTCCCCCACAGATTGTAAACAGTGCAGAAAATCTGGGGGAGGTTCTCCGCGGTGATCGCATCGAGAATTCTGTATACATGTTCAAAATGAGGGAGGAGCAGTCCTGTGTGGTAGCTTGTCGAGTAAACCTTGACGCTGAATCTGCAAAAAACTTCAAGGAAAAAATTGAAGATAAGTATCGAGTACAAATGATTTTGGATAACCTTCCAGTCGCTGTTCTCAGACAAAGGCGGGATGGAAGTCCCTCAACAACTTATGAACATGGATTCAGTGTTGGATTCAAAGGAAATTATGCTGGGAATAAAGAGGAGAAATATTTTATTAACAACCACTTGAGTTTCCGAGTTATGTATCACAAAGATCCTGAGACTGATTCTGCTCGAATTGTTGGATTTGAGGTTACTCCAAACAGTATCAATCACGAATATAAGGAGTGGAATGGTAACAATACTCAGTTGGCAACATGCAATAAAGACACGAAAAATCTACCACCGGGAAGCAGTGTTCCACAAGAAGTTGACAAAGATAAGGAGGTTGTGTTTACATATGATGTCTCCTTTAAGGAAAGTGAGATCAAGTGGGCATCTCGTTGGGACACATACCTCCTCATGAATGACGATCAGATCCACTGGTTTTCAATTATAAATTCATTGATGATTGTCCTCTTTTTATCTGGTATGGTGGCTATGATCATGATGAGAACTCTATACAGAGACATTGCCAACTATAATCAGCTGGACAGTCAAGATGAGGCTCAAGAAGAAACTGGATGGAAACTTGTAAATGGAGATGTTTTTAGGCCACCAATCAATTCCAATTTACTGTGCGTCTACGTTGGGACAGGGGTTCAGATCTTTGCAATGACACTCGTAACCATGATATTTGCATTGTTGGGTTTCTTGTCTCCTTCCAACAGAGGGGGTCTCATGACTGCCATGGTTCTTTTGTGGGTTTTCATGGGCTTATTTGCTGGTTACTCCTCTGCACGATTGTACAAAATGTTCAAGGGTACAGAGTGGAAGAGGAATACTTTAAAGACTGCCTTCATGTTTCCAGGAATTCTTTTTGCCGTCTTCTTTGTGCTGAATGCTCTAATTTGGGGGGAGAAGTCTTCTGGGGCTGTGCCTTTTGGGACAATGATTGCTTTGGTTTGCTTATGGTTTGGAATATCAGTGCCCTTGGTCTTTGTGGGTAGTTATTTGGGGTTCAAAAAACCACCTGTTGAAGACCCTGTAAAGACCAACAAAATTCCTCGGCAGGTGCCAGAGCAGGCATGGTACATGAAACCAGTATTCTCTATCCTTATTGGAGGCATTCTTCCATTTGGAGCGGTTTTCATCGAGCTGTTCTTTATCTTAACATCAATTTGGCTGAACCAGTTCTATTACATATTTGGCTTCCTTTTCATCGTGTTTGTTATCCTTCTGATCACTTGTGCGGAGATAACAATCGTGCTATGCTACTTCCAGTTATGCAGTGAAGACTACCACTGGTGGTGGAGATCTTACCTGACCGCTGGCTCATCTGCTCTTTACCTTCTACTCTACTCTGGTTTCTACTTCTTTACCAAGTTGGAGATTACAAAGTTTGTTTCGGGCGTCCTTTACTTTGGGTACATGTTAATTGTTTCATATGCCTTTTTCGTCCTGACTGGAACCATTGGTTTCTACGCGTGTTTCTGGTTCGTACGAAAGATCTACTCCTCTGTGAAGATTGACTGA

Protein Analysis

644

Amino Acids

73.77

Weight (kDa)

8.29

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 61 - 600 1.1e-224 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 854
AarI CACCTGC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 1459
AccB1I GGYRCC 1 cut(s) 1471
AccBSI CCGCTC 1 cut(s) 1541
AccI GTMKAC 2 cut(s) 285, 1041
AccII CGCG 3 cut(s) 114, 261, 1883
AciI CCGC 7 cut(s) 18, 259, 261, 442, 1541, 1649, 1725
AclWI GGATC 3 cut(s) 20, 566, 829
AcsI RAATTY 4 cut(s) 277, 856, 1269, 1458
AcyI GRCGYC 2 cut(s) 102, 1809
AfaI GTAC 7 cut(s) 211, 396, 1205, 1222, 1490, 1826, 1899
AfiI CCNNNNNNNGG 1 cut(s) 1128
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 3 cut(s) 288, 1827, 1881
AgsI TTSAA 8 cut(s) 295, 367, 380, 493, 849, 1216, 1420, 1436
AjnI CCWGG 1 cut(s) 1264
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 3 cut(s) 326, 946, 1555
AluI AGCT 3 cut(s) 326, 946, 1555
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 5 cut(s) 572, 769, 918, 1119, 1139
AlwI GGATC 3 cut(s) 20, 566, 829
AlwNI CAGNNNCTG 1 cut(s) 425
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 1010
ApoI RAATTY 4 cut(s) 277, 856, 1269, 1458
Asp700I GAANNNNTTC 1 cut(s) 1589
AsuC2I CCSGG 3 cut(s) 98, 99, 705
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 1389
BanI GGYRCC 1 cut(s) 1471
BbsI GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 2 cut(s) 440, 975
BceAI ACGGC 1 cut(s) 1265
BciT130I CCWGG 1 cut(s) 1266
BclI TGATCA 2 cut(s) 900, 1638
BcnI CCSGG 3 cut(s) 98, 99, 705
BcoDI GTCTC 5 cut(s) 572, 769, 918, 1119, 1139
BfrI CTTAAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 1459
BglII AGATCT 3 cut(s) 1062, 1712, 1905
Bme1390I CCNGG 4 cut(s) 98, 99, 705, 1266
BmeT110I CYCGRG 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 1473, 1867
BmrFI CCNGG 4 cut(s) 98, 99, 705, 1266
BmsI GCATC 2 cut(s) 279, 803
BpiI GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
BplI GAGNNNNNCTC 2 cut(s) 1119, 1151
BpuEI CTTGAG 2 cut(s) 565, 951
BpuMI CCSGG 3 cut(s) 98, 99, 705
BsaBI GATNNNNATC 2 cut(s) 387, 1658
BsaHI GRCGYC 2 cut(s) 102, 1809
BsaI GGTCTC 1 cut(s) 1139
BsaJI CCNNGG 5 cut(s) 97, 259, 1146, 1389, 1463
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 734, 764
Bsc4I CCNNNNNNNGG 1 cut(s) 1128
Bse1I ACTGG 8 cut(s) 419, 845, 982, 1499, 1588, 1678, 1706, 1867
Bse3DI GCAATG 2 cut(s) 927, 1077
Bse8I GATNNNNATC 2 cut(s) 387, 1658
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 5 cut(s) 97, 259, 1146, 1389, 1463
BseGI GGATG 2 cut(s) 451, 986
BseJI GATNNNNATC 2 cut(s) 387, 1658
BseLI CCNNNNNNNGG 1 cut(s) 1128
BseMI GCAATG 2 cut(s) 927, 1077
BseMII CTCAG 3 cut(s) 445, 567, 677
BseNI ACTGG 8 cut(s) 419, 845, 982, 1499, 1588, 1678, 1706, 1867
BseRI GAGGAG 9 cut(s) 53, 56, 64, 99, 320, 533, 806, 1180, 1903
BseSI GKGCMC 1 cut(s) 1389
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 2 cut(s) 255, 1179
Bsh1236I CGCG 3 cut(s) 114, 261, 1883
BshFI GGCC 1 cut(s) 1012
BshNI GGYRCC 1 cut(s) 1471
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 2 cut(s) 98, 704
BsiWI CGTACG 1 cut(s) 1897
BslFI GGGAC 5 cut(s) 64, 438, 818, 1063, 1357
BslI CCNNNNNNNGG 1 cut(s) 1128
BsmAI GTCTC 5 cut(s) 572, 769, 918, 1119, 1139
BsmFI GGGAC 5 cut(s) 64, 438, 818, 1063, 1357
BsmI GAATGC 2 cut(s) 1303, 1524
BsnI GGCC 1 cut(s) 1012
Bso31I GGTCTC 1 cut(s) 1139
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 63, 1389
Bsp1407I TGTACA 1 cut(s) 1203
Bsp19I CCATGG 1 cut(s) 1146
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 7 cut(s) 18, 259, 261, 442, 1541, 1649, 1725
BspANI GGCC 1 cut(s) 1012
BspCNI CTCAG 3 cut(s) 444, 568, 676
BspFNI CGCG 3 cut(s) 114, 261, 1883
BspHI TCATGA 3 cut(s) 819, 903, 1137
BspLI GGNNCC 2 cut(s) 1473, 1867
BspMI ACCTGC 1 cut(s) 1459
BspPI GGATC 3 cut(s) 20, 566, 829
BspT107I GGYRCC 1 cut(s) 1471
BspTI CTTAAG 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 1139
BsrBI CCGCTC 1 cut(s) 1541
BsrDI GCAATG 2 cut(s) 927, 1077
BsrGI TGTACA 1 cut(s) 1203
BsrI ACTGG 8 cut(s) 419, 845, 982, 1499, 1588, 1678, 1706, 1867
BssECI CCNNGG 5 cut(s) 97, 259, 1146, 1389, 1463
BssNAI GTATAC 1 cut(s) 286
BssNI GRCGYC 2 cut(s) 102, 1809
BssT1I CCWWGG 2 cut(s) 1146, 1389
Bst1107I GTATAC 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 5 cut(s) 58, 233, 623, 953, 1035
Bst6I CTCTTC 1 cut(s) 1226
BstACI GRCGYC 2 cut(s) 102, 1809
BstAFI CTTAAG 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 1203
BstC8I GCNNGC 2 cut(s) 1482, 1729
BstDEI CTNAG 3 cut(s) 431, 576, 663
BstDSI CCRYGG 2 cut(s) 259, 1146
BstF5I GGATG 2 cut(s) 451, 986
BstFNI CGCG 3 cut(s) 114, 261, 1883
BstMAI GTCTC 5 cut(s) 572, 769, 918, 1119, 1139
BstMWI GCNNNNNNNGC 2 cut(s) 267, 353
BstNI CCWGG 1 cut(s) 1266
BstNSI RCATGY 3 cut(s) 292, 678, 1831
BstSCI CCNGG 4 cut(s) 96, 97, 703, 1264
BstSLI GKGCMC 1 cut(s) 1389
BstUI CGCG 3 cut(s) 114, 261, 1883
BstV2I GAAGAC 4 cut(s) 1276, 1314, 1443, 1698
BstX2I RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
BstYI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
BstZ17I GTATAC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 1012
BtgI CCRYGG 2 cut(s) 259, 1146
BtsCI GGATG 2 cut(s) 451, 986
BtsI GCAGTG 3 cut(s) 82, 718, 1693
BtsIMutI CAGTG 8 cut(s) 82, 238, 487, 718, 838, 1389, 1693, 1699
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 1459
Cac8I GCNNGC 2 cut(s) 1482, 1729
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 3 cut(s) 819, 903, 1137
Cfr42I CCGCGG 1 cut(s) 262
Cfr9I CCCGGG 1 cut(s) 97
CseI GACGC 5 cut(s) 91, 181, 353, 1027, 1798
Csp6I GTAC 7 cut(s) 210, 395, 1204, 1221, 1489, 1825, 1898
CviQI GTAC 7 cut(s) 210, 395, 1204, 1221, 1489, 1825, 1898
DdeI CTNAG 3 cut(s) 431, 576, 663
DraI TTTAAA 1 cut(s) 1245
Eam1104I CTCTTC 1 cut(s) 1226
EarI CTCTTC 1 cut(s) 1226
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 1146, 1389
Eco31I GGTCTC 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 97
EcoRI GAATTC 2 cut(s) 277, 1269
EcoRII CCWGG 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 1146, 1389
ErhI CCWWGG 2 cut(s) 1146, 1389
FalI AAGNNNNNCTT 2 cut(s) 1238, 1270
FaqI GGGAC 5 cut(s) 64, 438, 818, 1063, 1357
FauI CCCGC 1 cut(s) 435
FauNDI CATATG 3 cut(s) 184, 757, 1843
FbaI TGATCA 2 cut(s) 900, 1638
FblI GTMKAC 2 cut(s) 285, 1041
FokI GGATG 2 cut(s) 458, 993
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 1 cut(s) 1012
HapII CCGG 2 cut(s) 98, 704
HgaI GACGC 5 cut(s) 91, 181, 353, 1027, 1798
Hin1I GRCGYC 2 cut(s) 102, 1809
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 4 cut(s) 350, 477, 489, 584
HpaII CCGG 2 cut(s) 98, 704
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 7 cut(s) 151, 229, 286, 337, 730, 753, 1042
Hpy188I TCNGA 5 cut(s) 434, 554, 834, 1062, 1638
Hpy8I GTNNAC 7 cut(s) 151, 229, 286, 337, 730, 753, 1042
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 5 cut(s) 425, 1128, 1264, 1643, 1757
HpyCH4III ACNGT 5 cut(s) 58, 233, 623, 953, 1035
HpyCH4IV ACGT 1 cut(s) 1044
HpyCH4V TGCA 7 cut(s) 236, 356, 678, 1070, 1097, 1196, 1686
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 353
HpyF3I CTNAG 3 cut(s) 431, 576, 663
HpySE526I ACGT 1 cut(s) 1044
Hsp92I GRCGYC 2 cut(s) 102, 1809
Ksp22I TGATCA 2 cut(s) 900, 1638
KspI CCGCGG 1 cut(s) 262
LmnI GCTCC 4 cut(s) 66, 112, 307, 1538
LweI GCATC 2 cut(s) 279, 803
MaeII ACGT 1 cut(s) 1044
MaeIII GTNAC 4 cut(s) 610, 653, 1081, 1184
MbiI CCGCTC 1 cut(s) 1541
MboII GAAGA 8 cut(s) 392, 983, 1243, 1276, 1314, 1448, 1520, 1703
MflI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
MhlI GDGCHC 2 cut(s) 63, 1389
MluI ACGCGT 1 cut(s) 1881
MmeI TCCRAC 4 cut(s) 466, 580, 1146, 1764
MroXI GAANNNNTTC 1 cut(s) 1589
MseI TTAA 6 cut(s) 200, 534, 771, 1244, 1568, 1832
MspA1I CMGCKG 3 cut(s) 261, 946, 1727
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 2 cut(s) 98, 704
MspR9I CCNGG 4 cut(s) 98, 99, 705, 1266
Mva1269I GAATGC 2 cut(s) 1303, 1524
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 3 cut(s) 114, 261, 1883
MwoI GCNNNNNNNGC 2 cut(s) 267, 353
NciI CCSGG 3 cut(s) 98, 99, 705
NcoI CCATGG 1 cut(s) 1146
NdeI CATATG 3 cut(s) 184, 757, 1843
NlaIV GGNNCC 2 cut(s) 1473, 1867
NmeAIII GCCGAG 1 cut(s) 1444
NruI TCGCGA 1 cut(s) 114
NspI RCATGY 3 cut(s) 292, 678, 1831
PagI TCATGA 3 cut(s) 819, 903, 1137
PaqCI CACCTGC 1 cut(s) 1459
PciI ACATGT 2 cut(s) 288, 1827
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 2 cut(s) 1303, 1524
PdmI GAANNNNTTC 1 cut(s) 1589
PfeI GAWTC 4 cut(s) 350, 477, 489, 584
Pfl23II CGTACG 1 cut(s) 1897
PfoI TCCNGGA 1 cut(s) 1264
PscI ACATGT 2 cut(s) 288, 1827
PsiI TTATAA 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 1264
PspLI CGTACG 1 cut(s) 1897
PspN4I GGNNCC 2 cut(s) 1473, 1867
PsrI GAACNNNNNNTAC 2 cut(s) 1196, 1228
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 6 cut(s) 12, 571, 834, 1062, 1712, 1905
PvuII CAGCTG 1 cut(s) 946
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 7 cut(s) 211, 396, 1205, 1222, 1490, 1826, 1899
RsaNI GTAC 7 cut(s) 210, 395, 1204, 1221, 1489, 1825, 1898
SacII CCGCGG 1 cut(s) 262
SaqAI TTAA 6 cut(s) 200, 534, 771, 1244, 1568, 1832
ScrFI CCNGG 4 cut(s) 98, 99, 705, 1266
SduI GDGCHC 2 cut(s) 63, 1389
SfaNI GCATC 2 cut(s) 279, 803
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SmaI CCCGGG 1 cut(s) 99
SmlI CTYRAG 3 cut(s) 199, 544, 966
SmoI CTYRAG 3 cut(s) 199, 544, 966
SsiI CCGC 7 cut(s) 18, 259, 261, 442, 1541, 1649, 1725
SspI AATATT 1 cut(s) 527
StyD4I CCNGG 4 cut(s) 96, 97, 703, 1264
StyI CCWWGG 2 cut(s) 1146, 1389
TaaI ACNGT 5 cut(s) 58, 233, 623, 953, 1035
TaiI ACGT 1 cut(s) 1047
TaqI TCGA 5 cut(s) 273, 331, 391, 592, 1551
TatI WGTACW 3 cut(s) 209, 394, 1203
TfiI GAWTC 4 cut(s) 350, 477, 489, 584
Tru1I TTAA 6 cut(s) 200, 534, 771, 1244, 1568, 1832
Tru9I TTAA 6 cut(s) 200, 534, 771, 1244, 1568, 1832
TscAI CASTG 8 cut(s) 89, 238, 487, 718, 845, 1389, 1693, 1706
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 8 cut(s) 89, 238, 487, 718, 845, 1389, 1693, 1706
Vha464I CTTAAG 1 cut(s) 199
XapI RAATTY 4 cut(s) 277, 856, 1269, 1458
XceI RCATGY 3 cut(s) 292, 678, 1831
XcmI CCANNNNNNNNNTGG 1 cut(s) 1482
XmaI CCCGGG 1 cut(s) 97
XmiI GTMKAC 2 cut(s) 285, 1041
XmnI GAANNNNTTC 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.