Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010967

Physical Location & Seq

Genomic Coordinates Forward (+)

25889540 .. 25892516

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1222100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGAAGAAGAAGATGATTATTCTGAGTATGTTCCAGTGGCGAAGCGACGAGCAATGGAGGCTCAGAAGATTCTTCAGCGCAAGGGGAAGTCATCCGGACTTGACGAAGAGTTGGAGAAATCAAAGCTTGCTGAAGCAAAACCTAGCCTTCTTGTAAAAGCATCACAGTTGAAGCGTGACGCTCCTGAGATTACTCCAACTGAGGAGATTTTGCAACAAGAGAAGGAAATGATCGAGCACTTATCAGATCGCAAAACCCTCATGTCAGTTCGTGAATTGGCAAAGGGAATCACTTACACGGAGCCTTTACTGACAGGTTGGAAGCCCCCATTGAATATAAGGCAGATGTCGAGCCAGCAATGTGATTTTATTAGAAAGCAGTGGCACATCATAGTTAGCGGTGATGATATTCCACCACCCATTAAGAATTTTAAGGATATGAGATTTCCTGAACCAATTCTGAAGATGTTGAAAACCAAGGGGATTGTTCAGCCAACCCCCATTCAGGTGCAAGGTCTTCCGGTGATTTTAGCAGGGAGAGACATGATTGGTATTGCGTTTACAGGTTCAGGAAAGACATTGGTTTTTGTGTTGCCATTGATTATGATAGCATTGCAGGAGGAGATTATGATGCCAATTAATCAAGGTGAAGGGCCTTTTGGATTAATTATTTGCCCATCAAGGGAGCTTGCAAGGCAGACTTATGAAGTGGTGGAAGAGTTTCTGCTTCCTATGAGAGAGGCTGGATATCCAGAAATAAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGCGGTCGCAGTTGGAAATTGTGAAAAAAGGTGTCCATATAGTTGTTGCTACTCCTGGGAGGTTGAAGGATATGCTGGCAAAGAAAAAAATGAACCTCGATAGTTGCAGATATTTAACTTTGGACGAGGCTGATAGATTGGTAGATTTGGGCTTTGAGGATGACATAAGAGAAGTTTTTGACCACTTTAAAGCTCAACGACAAACACTCCTATTTTCAGCCACCATGCCCGCAAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTAACGGTAAATGTGGGAAGAGCTGGAGCAGCAAATCTTGATGTGATTCAAGAGGTTGAGTATGTGAAGCAAGAGGCCAAGATCGTTTACCTTCTTGAATGTCTACAAAAGACCCCACCTCCTGTTCTAATATTTTGTGAAAACAAAGCTGATGTGGACGATATTCATGAGTATCTTCTGTTAAAAGGAGTGGAAGCAGTGGCCATACATGGAGGGAAGGATCAGGAAGAGAGAGAGTATGCCATTTCTTCTTTTAAGGCAGGGAAGAAAGATGTTTTGGTTGCCACTGATGTTGCCTCAAAGGGTTTGGATTTTCCTGACATTCAACATGTCATTAATTATGACATGCCACCAGAAATTGAAAACTACGTCCACAGGATTGGACGAACAGGAAGATGTGGCAAGACTGGAATAGCAACAACTTTTATAAACAAGAATCAAACAGAAACGACACTTCTTGATTTGAAACACCTCCTGCAAGAGGCAAAACAAAGGATTCCACCCGTTTTGGCTGAGCTTAATGATCCAATGGAAGATGTGGATGCAATTACAAATGCAAGTGGGGTCAAGGGTTGTGCTTACTGTGGCGGTCTTGGTCATCGTATCAAAGATTGCCCCAAACTAGAGCAACAGAAAAGCATGGCAATTGCCAGCTCTAGGAGGGATTATTTTGGATCCGGTGGTTACAGAGGGGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCHC

Protein Analysis

588

Amino Acids

65.73

Weight (kDa)

6.05

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	166 - 345	4.7e-41	DEAD/DEAH box helicase
Helicase_C	PF00271	381 - 488	9.8e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33370 AT5G51280
fragaria_vesca	FvH4_3g15960 FvH4_6g29290
malus_domestica	MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1
prunus_persica	Prupe.3G092400_v2.0.a1
pyrus_communis	pycom17g22090 pycom808g00170
rosa_chinensis	RchiOBHm_Chr2g0134471
rosa_laevigata	RLG00000019394
rosa_multiflora	Rmu_co8377539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110190
rosa_rugosa	Rorug02G0317300
rosa_samantha	Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000
rosa_wichuraiana	Rw2G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1490
AccI	GTMKAC	1 cut(s)	1165
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	4 cut(s)	399, 793, 1020, 1650
AclWI	GGATC	4 cut(s)	1290, 1580, 1731, 1744
AcoI	YGGCCR	1 cut(s)	1263
AcsI	RAATTY	2 cut(s)	427, 1026
AcuI	CTGAAG	3 cut(s)	59, 153, 482
AfiI	CCNNNNNNNGG	4 cut(s)	505, 682, 1543, 1719
AflIII	ACRYGT	1 cut(s)	1390
AgsI	TTSAA	9 cut(s)	172, 334, 472, 856, 1112, 1160, 1388, 1424, 1528
AjnI	CCWGG	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	4 cut(s)	642, 674, 1322, 1354
AluBI	AGCT	7 cut(s)	127, 688, 983, 1085, 1211, 1579, 1716
AluI	AGCT	7 cut(s)	127, 688, 983, 1085, 1211, 1579, 1716
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	4 cut(s)	1290, 1580, 1731, 1744
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	4 cut(s)	653, 761, 1137, 1263
ApeKI	GCWGC	1 cut(s)	1091
ApoI	RAATTY	2 cut(s)	427, 1026
AseI	ATTAAT	3 cut(s)	639, 665, 1398
Asp700I	GAANNNNTTC	2 cut(s)	456, 720
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	3 cut(s)	413, 535, 659
BalI	TGGCCA	1 cut(s)	1265
BamHI	GGATCC	1 cut(s)	1736
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	1103
BccI	CCATC	1 cut(s)	685
BciT130I	CCWGG	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	4 cut(s)	144, 1041, 1685, 1719
BisI	GCNGC	1 cut(s)	1092
BlpI	GCTNAGC	1 cut(s)	1575
BlsI	GCNGC	1 cut(s)	1093
Bme1390I	CCNGG	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	303, 1738
BmrFI	CCNGG	1 cut(s)	846
BmsI	GCATC	3 cut(s)	170, 621, 1594
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	1107
Bpu1102I	GCTNAGC	1 cut(s)	1575
BsaJI	CCNNGG	2 cut(s)	477, 845
BsaWI	WCCGGW	3 cut(s)	95, 520, 1739
BsaXI	ACNNNNNCTCC	4 cut(s)	981, 1011, 1165, 1195
Bsc4I	CCNNNNNNNGG	4 cut(s)	505, 682, 1543, 1719
Bse1I	ACTGG	2 cut(s)	35, 1474
Bse3DI	GCAATG	3 cut(s)	60, 365, 611
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	477, 845
BseGI	GGATG	3 cut(s)	92, 955, 1609
BseLI	CCNNNNNNNGG	4 cut(s)	505, 682, 1543, 1719
BseMI	GCAATG	3 cut(s)	60, 365, 611
BseMII	CTCAG	5 cut(s)	15, 77, 177, 192, 1566
BseNI	ACTGG	2 cut(s)	35, 1474
BseRI	GAGGAG	2 cut(s)	218, 635
BseXI	GCAGC	1 cut(s)	1103
Bsh1285I	CGRYCG	1 cut(s)	797
BshFI	GGCC	4 cut(s)	655, 763, 1139, 1265
BsiEI	CGRYCG	1 cut(s)	797
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	96, 521, 1740
BslI	CCNNNNNNNGG	4 cut(s)	505, 682, 1543, 1719
BsmAI	GTCTC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	655, 763, 1139, 1265
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
Bsp1720I	GCTNAGC	1 cut(s)	1575
BspACI	CCGC	4 cut(s)	399, 793, 1020, 1650
BspANI	GGCC	4 cut(s)	655, 763, 1139, 1265
BspCNI	CTCAG	5 cut(s)	16, 76, 178, 193, 1567
BspEI	TCCGGA	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	1228
BspLI	GGNNCC	2 cut(s)	303, 1738
BspPI	GGATC	4 cut(s)	1290, 1580, 1731, 1744
BspQI	GCTCTTC	1 cut(s)	1075
BsrDI	GCAATG	3 cut(s)	60, 365, 611
BsrI	ACTGG	2 cut(s)	35, 1474
BssECI	CCNNGG	2 cut(s)	477, 845
BssMI	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	3 cut(s)	168, 1069, 1646
Bst6I	CTCTTC	4 cut(s)	102, 711, 1075, 1284
BstC8I	GCNNGC	6 cut(s)	129, 356, 690, 867, 1020, 1714
BstDEI	CTNAG	5 cut(s)	24, 63, 186, 201, 1575
BstENI	CCTNNNNNAGG	1 cut(s)	1541
BstF5I	GGATG	3 cut(s)	92, 955, 1609
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	6 cut(s)	234, 250, 1146, 1285, 1588, 1739
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 694, 1046, 1091
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	2 cut(s)	1394, 1411
BstSCI	CCNGG	1 cut(s)	844
BstV1I	GCAGC	1 cut(s)	1103
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	1736
BstXI	CCANNNNNNTGG	1 cut(s)	1442
BstYI	RGATCY	1 cut(s)	1736
BsuRI	GGCC	4 cut(s)	655, 763, 1139, 1265
BtsCI	GGATG	3 cut(s)	92, 955, 1609
BtsI	GCAGTG	2 cut(s)	386, 1266
BtsIMutI	CAGTG	4 cut(s)	42, 386, 1266, 1347
Cac8I	GCNNGC	6 cut(s)	129, 356, 690, 867, 1020, 1714
CciI	TCATGA	1 cut(s)	1228
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	188
CspCI	CAANNNNNGTGG	4 cut(s)	1336, 1371, 1551, 1586
CviAII	CATG	8 cut(s)	262, 544, 1015, 1229, 1271, 1391, 1408, 1702
DdeI	CTNAG	5 cut(s)	24, 63, 186, 201, 1575
DpnI	GATC	6 cut(s)	233, 249, 1145, 1284, 1587, 1738
DpnII	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
DraI	TTTAAA	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	1263
Eam1104I	CTCTTC	4 cut(s)	102, 711, 1075, 1284
EarI	CTCTTC	4 cut(s)	102, 711, 1075, 1284
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	749
Eco57I	CTGAAG	3 cut(s)	59, 153, 482
EcoNI	CCTNNNNNAGG	1 cut(s)	1541
EcoO109I	RGGNCCY	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	844
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	8 cut(s)	265, 547, 1018, 1232, 1274, 1394, 1411, 1705
FalI	AAGNNNNNCTT	2 cut(s)	685, 717
FatI	CATG	8 cut(s)	261, 543, 1014, 1228, 1270, 1390, 1407, 1701
FauI	CCCGC	1 cut(s)	1027
FblI	GTMKAC	1 cut(s)	1165
Fnu4HI	GCNGC	1 cut(s)	1092
FokI	GGATG	3 cut(s)	79, 962, 1616
Fsp4HI	GCNGC	1 cut(s)	1092
FspBI	CTAG	4 cut(s)	144, 1041, 1685, 1719
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	1092
GsuI	CTGGAG	1 cut(s)	1107
HaeIII	GGCC	4 cut(s)	655, 763, 1139, 1265
HapII	CCGG	3 cut(s)	96, 521, 1740
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	8 cut(s)	265, 547, 1018, 1232, 1274, 1394, 1411, 1705
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	5 cut(s)	70, 288, 1108, 1498, 1558
HpaII	CCGG	3 cut(s)	96, 521, 1740
HphI	GGTGA	3 cut(s)	413, 535, 659
Hpy166II	GTNNAC	5 cut(s)	561, 1150, 1166, 1219, 1435
Hpy188I	TCNGA	5 cut(s)	25, 66, 247, 462, 1032
Hpy8I	GTNNAC	5 cut(s)	561, 1150, 1166, 1219, 1435
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	6 cut(s)	158, 217, 644, 850, 1163, 1273
HpyCH4III	ACNGT	3 cut(s)	168, 1069, 1646
HpyCH4IV	ACGT	1 cut(s)	1431
HpyCH4V	TGCA	8 cut(s)	214, 511, 616, 692, 897, 1540, 1607, 1619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 694, 1046, 1091
HpyF3I	CTNAG	5 cut(s)	24, 63, 186, 201, 1575
HpySE526I	ACGT	1 cut(s)	1431
Hsp92II	CATG	8 cut(s)	265, 547, 1018, 1232, 1274, 1394, 1411, 1705
HspAI	GCGC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
LguI	GCTCTTC	1 cut(s)	1075
LmnI	GCTCC	4 cut(s)	187, 301, 685, 1088
Lsp1109I	GCAGC	1 cut(s)	1103
LweI	GCATC	3 cut(s)	170, 621, 1594
MaeI	CTAG	4 cut(s)	144, 1041, 1685, 1719
MaeII	ACGT	1 cut(s)	1431
MaeIII	GTNAC	3 cut(s)	176, 1063, 1745
MalI	GATC	6 cut(s)	233, 249, 1145, 1284, 1587, 1738
MboI	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
MfeI	CAATTG	1 cut(s)	1707
MflI	RGATCY	1 cut(s)	1736
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	1265
MluNI	TGGCCA	1 cut(s)	1265
MmeI	TCCRAC	4 cut(s)	93, 221, 299, 783
Mox20I	TGGCCA	1 cut(s)	1265
MroI	TCCGGA	1 cut(s)	95
MroXI	GAANNNNTTC	2 cut(s)	456, 720
MscI	TGGCCA	1 cut(s)	1265
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	1265
MspI	CCGG	3 cut(s)	96, 521, 1740
MspR9I	CCNGG	1 cut(s)	846
MunI	CAATTG	1 cut(s)	1707
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	59, 694, 1046, 1091
NdeII	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
NlaIII	CATG	8 cut(s)	265, 547, 1018, 1232, 1274, 1394, 1411, 1705
NlaIV	GGNNCC	2 cut(s)	303, 1738
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	1394, 1411
PagI	TCATGA	1 cut(s)	1228
PceI	AGGCCT	1 cut(s)	763
PciI	ACATGT	1 cut(s)	1390
PciSI	GCTCTTC	1 cut(s)	1075
PdmI	GAANNNNTTC	2 cut(s)	456, 720
PfeI	GAWTC	5 cut(s)	70, 288, 1108, 1498, 1558
PkrI	GCNGC	1 cut(s)	1093
PscI	ACATGT	1 cut(s)	1390
PshBI	ATTAAT	3 cut(s)	639, 665, 1398
PsiI	TTATAA	1 cut(s)	1490
Psp6I	CCWGG	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	303, 1738
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	1736
RseI	CAYNNNNRTG	1 cut(s)	506
SapI	GCTCTTC	1 cut(s)	1075
SatI	GCNGC	1 cut(s)	1092
Sau3AI	GATC	6 cut(s)	231, 247, 1143, 1282, 1585, 1736
Sau96I	GGNCC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	170, 621, 1594
SmiMI	CAYNNNNRTG	1 cut(s)	506
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	4 cut(s)	399, 793, 1020, 1650
SspI	AATATT	1 cut(s)	1194
SspMI	CTAG	4 cut(s)	144, 1041, 1685, 1719
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	168, 1069, 1646
TaiI	ACGT	1 cut(s)	1434
TaqI	TCGA	3 cut(s)	234, 350, 888
TfiI	GAWTC	5 cut(s)	70, 288, 1108, 1498, 1558
TscAI	CASTG	4 cut(s)	42, 386, 1266, 1354
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	720, 896, 1217
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	4 cut(s)	42, 386, 1266, 1354
VspI	ATTAAT	3 cut(s)	639, 665, 1398
XagI	CCTNNNNNAGG	1 cut(s)	1541
XapI	RAATTY	2 cut(s)	427, 1026
XceI	RCATGY	2 cut(s)	1394, 1411
XmiI	GTMKAC	1 cut(s)	1165
XmnI	GAANNNNTTC	2 cut(s)	456, 720
XspI	CTAG	4 cut(s)	144, 1041, 1685, 1719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.