Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377539.1

Orthogroup ID

OG0010967

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1109

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377539.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 749 bp

atgattgagcatttgtctgatcgcaagaccctcatgtcggttcgtgagttggctaagggaatcacttatacggaccctttgcccacaggttggaagcccccattgcagattagaaggatgccgacaaagcactgtgatttgattcgaaagcagtggcacatcatagttaatggcgaagatattccaccgcctattaagaatttcaaggatatgagatttcctgaaccgattttgaagatgttgaaaaccaaggggattgttcaaccaacgcccattcaggtgcaaggtcttccagtgattttgtcagggagggatatgattggtattgcatttacgggttcaggaaagacgttggtttttgtgttgccattgattatgatggcaatgcaggaggagattatgatgccaattgttccaggagaagggccttttggattgatcatttgcccatccagggagctcgcaaggcagacttatgaagtagtggaacaatttctggctcctatgagagaggctgggtatccagagataaggcctttgttatgcattggtggagtggaaatgaagtcgcagttggatattgtgcgcaaaggtgttcatatagttgttgctactcccgggaggttaaaggatatgctggcaaagaaaaaaatgaaccttgataattgcagatatctaactttagatgaggctgatagattggtagatttgggatttgaagatgacataagagaagtttttgaccattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCHC

Protein Analysis

249

Amino Acids

28.25

Weight (kDa)

8.3

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33370 AT5G51280
fragaria_vesca	FvH4_3g15960 FvH4_6g29290
malus_domestica	MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1
prunus_persica	Prupe.3G092400_v2.0.a1
pyrus_communis	pycom17g22090 pycom808g00170
rosa_chinensis	RchiOBHm_Chr2g0134471
rosa_laevigata	RLG00000019394
rosa_multiflora	Rmu_co8377539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110190
rosa_rugosa	Rorug02G0317300
rosa_samantha	Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000
rosa_wichuraiana	Rw2G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
Acc16I	TGCGCA	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	90
AciI	CCGC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	199
AfiI	CCNNNNNNNGG	4 cut(s)	37, 90, 422, 454
AgsI	TTSAA	5 cut(s)	205, 235, 244, 263, 719
AjnI	CCWGG	2 cut(s)	415, 452
AjuI	GAANNNNNNNTTGG	4 cut(s)	414, 446, 557, 589
AluBI	AGCT	1 cut(s)	460
AluI	AGCT	1 cut(s)	460
Alw21I	GWGCWC	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	425, 533
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	2 cut(s)	180, 492
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	2 cut(s)	73, 425
AsuC2I	CCSGG	2 cut(s)	618, 619
AsuII	TTCGAA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	462
BccI	CCATC	2 cut(s)	373, 457
BciT130I	CCWGG	2 cut(s)	417, 454
BciVI	GTATCC	1 cut(s)	531
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	2 cut(s)	618, 619
BfuI	GTATCC	1 cut(s)	531
Bme1390I	CCNGG	4 cut(s)	417, 454, 618, 619
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	73, 425
BmiI	GGNNCC	2 cut(s)	75, 501
BmrFI	CCNGG	4 cut(s)	417, 454, 618, 619
BmsI	GCATC	2 cut(s)	108, 393
BpiI	GAAGAC	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	145
BpuMI	CCSGG	2 cut(s)	618, 619
BsaJI	CCNNGG	3 cut(s)	249, 453, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 90, 422, 454
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	2 cut(s)	101, 390
BseBI	CCWGG	2 cut(s)	417, 454
BseDI	CCNNGG	3 cut(s)	249, 453, 617
BseGI	GGATG	2 cut(s)	123, 449
BseLI	CCNNNNNNNGG	4 cut(s)	37, 90, 422, 454
BseMI	GCAATG	2 cut(s)	101, 390
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	427, 535
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	4 cut(s)	37, 90, 422, 454
BsnI	GGCC	2 cut(s)	427, 535
BsoBI	CYCGRG	1 cut(s)	617
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	19, 438
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	427, 535
BspLI	GGNNCC	2 cut(s)	75, 501
BspT104I	TTCGAA	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	101, 390
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	249, 453, 617
BssMI	GATC	2 cut(s)	19, 438
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	417, 454
Bst4CI	ACNGT	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	462, 639
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	123, 449
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	2 cut(s)	22, 441
BstMBI	GATC	2 cut(s)	19, 438
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 127, 466
BstNI	CCWGG	2 cut(s)	417, 454
BstSCI	CCNGG	4 cut(s)	415, 452, 616, 617
BstV2I	GAAGAC	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	427, 535
BtsCI	GGATG	2 cut(s)	123, 449
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	3 cut(s)	130, 158, 300
Cac8I	GCNNGC	2 cut(s)	462, 639
CfoI	GCGC	1 cut(s)	588
Cfr13I	GGNCC	2 cut(s)	73, 425
Cfr9I	CCCGGG	1 cut(s)	617
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	8 cut(s)	53, 97, 427, 460, 500, 515, 535, 692
CviKI_1	RGCY	8 cut(s)	53, 97, 427, 460, 500, 515, 535, 692
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	21, 440
DpnII	GATC	2 cut(s)	19, 438
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	415, 452
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	37
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FatI	CATG	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	438
FokI	GGATG	2 cut(s)	130, 436
FriOI	GRGCYC	1 cut(s)	462
FspI	TGCGCA	1 cut(s)	587
GlaI	GCGC	1 cut(s)	587
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	427, 535
HapII	CCGG	1 cut(s)	618
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HinfI	GANTC	2 cut(s)	60, 142
HpaII	CCGG	1 cut(s)	618
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	44, 221, 342, 524
HpyAV	CCTTC	2 cut(s)	108, 416
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	106, 283, 329, 388, 546, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 127, 466
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	19, 438
LmnI	GCTCC	2 cut(s)	457, 505
LweI	GCATC	2 cut(s)	108, 393
MaeII	ACGT	1 cut(s)	350
MalI	GATC	2 cut(s)	21, 440
MboI	GATC	2 cut(s)	19, 438
MboII	GAAGA	4 cut(s)	188, 247, 281, 731
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	199, 408, 491, 664
MmeI	TCCRAC	2 cut(s)	71, 555
MnlI	CCTC	6 cut(s)	41, 303, 385, 505, 615, 682
Mph1103I	ATGCAT	1 cut(s)	548
MroXI	GAANNNNTTC	2 cut(s)	180, 492
MseI	TTAA	3 cut(s)	168, 195, 626
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	4 cut(s)	417, 454, 618, 619
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	2 cut(s)	417, 454
MwoI	GCNNNNNNNGC	3 cut(s)	103, 127, 466
NciI	CCSGG	2 cut(s)	618, 619
NdeII	GATC	2 cut(s)	19, 438
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	75, 501
NsbI	TGCGCA	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	535
PdmI	GAANNNNTTC	2 cut(s)	180, 492
PfeI	GAWTC	2 cut(s)	60, 142
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	415, 452
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	2 cut(s)	415, 452
PspN4I	GGNNCC	2 cut(s)	75, 501
PspPI	GGNCC	2 cut(s)	73, 425
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	168, 195, 626
Sau3AI	GATC	2 cut(s)	19, 438
Sau96I	GGNCC	2 cut(s)	73, 425
ScrFI	CCNGG	4 cut(s)	417, 454, 618, 619
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	8 cut(s)	91, 282, 289, 353, 462, 595, 626, 660
SfaNI	GCATC	2 cut(s)	108, 393
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	1 cut(s)	73
SmaI	CCCGGG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	199, 408, 491, 664
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	4 cut(s)	415, 452, 616, 617
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	145
TasI	AATT	4 cut(s)	199, 408, 491, 664
TfiI	GAWTC	2 cut(s)	60, 142
Tru1I	TTAA	3 cut(s)	168, 195, 626
Tru9I	TTAA	3 cut(s)	168, 195, 626
TscAI	CASTG	3 cut(s)	137, 158, 300
TspDTI	ATGAA	4 cut(s)	492, 578, 587, 668
TspGWI	ACGGA	1 cut(s)	86
TspMI	CCCGGG	1 cut(s)	617
TspRI	CASTG	3 cut(s)	137, 158, 300
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	180, 492
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.