DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33370 AT5G51280 |
| fragaria_vesca | FvH4_3g15960 FvH4_6g29290 |
| malus_domestica | MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1 |
| prunus_persica | Prupe.3G092400_v2.0.a1 |
| pyrus_communis | pycom17g22090 pycom808g00170 |
| rosa_chinensis | RchiOBHm_Chr2g0134471 |
| rosa_laevigata | RLG00000019394 |
| rosa_multiflora | Rmu_co8377539.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00110190 |
| rosa_rugosa | Rorug02G0317300 |
| rosa_samantha | Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000 |
| rosa_wichuraiana | Rw2G030130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1165 |
| AccII | CGCG | 1 cut(s) | 273 |
| AciI | CCGC | 5 cut(s) | 343, 399, 1020, 1623, 1650 |
| AclWI | GGATC | 4 cut(s) | 1290, 1580, 1731, 1744 |
| AcoI | YGGCCR | 1 cut(s) | 1263 |
| AcsI | RAATTY | 2 cut(s) | 427, 1026 |
| AcuI | CTGAAG | 3 cut(s) | 59, 153, 482 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 505, 682, 1543 |
| AflIII | ACRYGT | 1 cut(s) | 1390 |
| AgsI | TTSAA | 9 cut(s) | 172, 334, 472, 856, 1112, 1160, 1388, 1424, 1528 |
| AjiI | CACGTC | 2 cut(s) | 709, 1216 |
| AjnI | CCWGG | 2 cut(s) | 680, 844 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 642, 674, 1322, 1354 |
| AluBI | AGCT | 7 cut(s) | 127, 688, 802, 1085, 1211, 1579, 1716 |
| AluI | AGCT | 7 cut(s) | 127, 688, 802, 1085, 1211, 1579, 1716 |
| Alw21I | GWGCWC | 1 cut(s) | 240 |
| Alw26I | GTCTC | 1 cut(s) | 1502 |
| AlwI | GGATC | 4 cut(s) | 1290, 1580, 1731, 1744 |
| AoxI | GGCC | 4 cut(s) | 653, 761, 1137, 1263 |
| ApeKI | GCWGC | 2 cut(s) | 799, 1091 |
| ApoI | RAATTY | 2 cut(s) | 427, 1026 |
| AseI | ATTAAT | 2 cut(s) | 639, 1398 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 456, 720 |
| AspLEI | GCGC | 1 cut(s) | 81 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuC2I | CCSGG | 2 cut(s) | 97, 535 |
| AsuHPI | GGTGA | 2 cut(s) | 535, 659 |
| BalI | TGGCCA | 1 cut(s) | 1265 |
| BamHI | GGATCC | 1 cut(s) | 1736 |
| BbsI | GAAGAC | 2 cut(s) | 84, 509 |
| Bbv12I | GWGCWC | 1 cut(s) | 240 |
| BbvCI | CCTCAGC | 1 cut(s) | 201 |
| BbvI | GCAGC | 2 cut(s) | 811, 1103 |
| BccI | CCATC | 1 cut(s) | 685 |
| BceAI | ACGGC | 1 cut(s) | 580 |
| BciT130I | CCWGG | 2 cut(s) | 682, 846 |
| BcnI | CCSGG | 2 cut(s) | 97, 535 |
| BcoDI | GTCTC | 1 cut(s) | 1502 |
| BfaI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| BisI | GCNGC | 3 cut(s) | 400, 800, 1092 |
| BlpI | GCTNAGC | 1 cut(s) | 1575 |
| BlsI | GCNGC | 3 cut(s) | 401, 801, 1093 |
| Bme1390I | CCNGG | 4 cut(s) | 97, 535, 682, 846 |
| BmgBI | CACGTC | 2 cut(s) | 709, 1216 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmiI | GGNNCC | 2 cut(s) | 303, 1738 |
| BmrFI | CCNGG | 4 cut(s) | 97, 535, 682, 846 |
| BmsI | GCATC | 5 cut(s) | 170, 621, 736, 1594, 1699 |
| BpiI | GAAGAC | 2 cut(s) | 84, 509 |
| BpmI | CTGGAG | 1 cut(s) | 1107 |
| Bpu10I | CCTNAGC | 1 cut(s) | 201 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1575 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| BpuMI | CCSGG | 2 cut(s) | 97, 535 |
| BsaJI | CCNNGG | 3 cut(s) | 477, 681, 845 |
| BsaWI | WCCGGW | 2 cut(s) | 520, 1739 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1165, 1195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 505, 682, 1543 |
| Bse1I | ACTGG | 2 cut(s) | 35, 1474 |
| Bse3DI | GCAATG | 3 cut(s) | 60, 365, 611 |
| BseBI | CCWGG | 2 cut(s) | 682, 846 |
| BseDI | CCNNGG | 3 cut(s) | 477, 681, 845 |
| BseGI | GGATG | 6 cut(s) | 351, 677, 727, 955, 1225, 1609 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 505, 682, 1543 |
| BseMI | GCAATG | 3 cut(s) | 60, 365, 611 |
| BseMII | CTCAG | 6 cut(s) | 15, 77, 177, 192, 1497, 1566 |
| BseNI | ACTGG | 2 cut(s) | 35, 1474 |
| BseRI | GAGGAG | 2 cut(s) | 218, 635 |
| BseXI | GCAGC | 2 cut(s) | 811, 1103 |
| Bsh1236I | CGCG | 1 cut(s) | 273 |
| BshFI | GGCC | 4 cut(s) | 655, 763, 1139, 1265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 240 |
| BsiSI | CCGG | 5 cut(s) | 96, 197, 521, 534, 1740 |
| BslFI | GGGAC | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 505, 682, 1543 |
| BsmAI | GTCTC | 1 cut(s) | 1502 |
| BsmFI | GGGAC | 1 cut(s) | 554 |
| BsnI | GGCC | 4 cut(s) | 655, 763, 1139, 1265 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1575 |
| Bsp68I | TCGCGA | 1 cut(s) | 273 |
| BspACI | CCGC | 5 cut(s) | 343, 399, 1020, 1623, 1650 |
| BspANI | GGCC | 4 cut(s) | 655, 763, 1139, 1265 |
| BspCNI | CTCAG | 6 cut(s) | 16, 76, 178, 193, 1498, 1567 |
| BspFNI | CGCG | 1 cut(s) | 273 |
| BspHI | TCATGA | 1 cut(s) | 1228 |
| BspLI | GGNNCC | 2 cut(s) | 303, 1738 |
| BspPI | GGATC | 4 cut(s) | 1290, 1580, 1731, 1744 |
| BspQI | GCTCTTC | 1 cut(s) | 1075 |
| BsrDI | GCAATG | 3 cut(s) | 60, 365, 611 |
| BsrI | ACTGG | 2 cut(s) | 35, 1474 |
| BssECI | CCNNGG | 3 cut(s) | 477, 681, 845 |
| BssMI | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst2UI | CCWGG | 2 cut(s) | 682, 846 |
| Bst4CI | ACNGT | 2 cut(s) | 168, 1069 |
| Bst6I | CTCTTC | 4 cut(s) | 102, 711, 1075, 1284 |
| BstC8I | GCNNGC | 7 cut(s) | 129, 356, 690, 867, 1020, 1621, 1714 |
| BstDEI | CTNAG | 6 cut(s) | 24, 63, 186, 201, 1506, 1575 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| BstF5I | GGATG | 6 cut(s) | 351, 677, 727, 955, 1225, 1609 |
| BstFNI | CGCG | 1 cut(s) | 273 |
| BstHHI | GCGC | 1 cut(s) | 81 |
| BstKTI | GATC | 6 cut(s) | 192, 250, 1146, 1285, 1588, 1739 |
| BstMAI | GTCTC | 1 cut(s) | 1502 |
| BstMBI | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 59, 694, 799, 1046, 1091 |
| BstNI | CCWGG | 2 cut(s) | 682, 846 |
| BstNSI | RCATGY | 2 cut(s) | 1394, 1411 |
| BstSCI | CCNGG | 4 cut(s) | 95, 533, 680, 844 |
| BstUI | CGCG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 2 cut(s) | 811, 1103 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 509 |
| BstX2I | RGATCY | 1 cut(s) | 1736 |
| BstYI | RGATCY | 1 cut(s) | 1736 |
| BsuRI | GGCC | 4 cut(s) | 655, 763, 1139, 1265 |
| BtgZI | GCGATG | 1 cut(s) | 417 |
| BtrI | CACGTC | 2 cut(s) | 709, 1216 |
| BtsCI | GGATG | 6 cut(s) | 351, 677, 727, 955, 1225, 1609 |
| BtsI | GCAGTG | 2 cut(s) | 386, 1266 |
| BtsIMutI | CAGTG | 4 cut(s) | 42, 386, 1266, 1347 |
| BtuMI | TCGCGA | 1 cut(s) | 273 |
| Cac8I | GCNNGC | 7 cut(s) | 129, 356, 690, 867, 1020, 1621, 1714 |
| CciI | TCATGA | 1 cut(s) | 1228 |
| CfoI | GCGC | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| CseI | GACGC | 1 cut(s) | 188 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1336, 1371, 1551, 1586 |
| CviAII | CATG | 8 cut(s) | 262, 544, 1015, 1229, 1271, 1391, 1408, 1702 |
| DdeI | CTNAG | 6 cut(s) | 24, 63, 186, 201, 1506, 1575 |
| DpnI | GATC | 6 cut(s) | 191, 249, 1145, 1284, 1587, 1738 |
| DpnII | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| DraI | TTTAAA | 1 cut(s) | 979 |
| EaeI | YGGCCR | 1 cut(s) | 1263 |
| Eam1104I | CTCTTC | 4 cut(s) | 102, 711, 1075, 1284 |
| EarI | CTCTTC | 4 cut(s) | 102, 711, 1075, 1284 |
| EciI | GGCGGA | 1 cut(s) | 358 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| Eco147I | AGGCCT | 1 cut(s) | 763 |
| Eco32I | GATATC | 1 cut(s) | 749 |
| Eco57I | CTGAAG | 3 cut(s) | 59, 153, 482 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| EcoO109I | RGGNCCY | 1 cut(s) | 653 |
| EcoRII | CCWGG | 2 cut(s) | 680, 844 |
| EcoRV | GATATC | 1 cut(s) | 749 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| FaeI | CATG | 8 cut(s) | 265, 547, 1018, 1232, 1274, 1394, 1411, 1705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 685, 717 |
| FaqI | GGGAC | 1 cut(s) | 554 |
| FatI | CATG | 8 cut(s) | 261, 543, 1014, 1228, 1270, 1390, 1407, 1701 |
| FauI | CCCGC | 2 cut(s) | 1027, 1616 |
| FblI | GTMKAC | 1 cut(s) | 1165 |
| Fnu4HI | GCNGC | 3 cut(s) | 400, 800, 1092 |
| FokI | GGATG | 6 cut(s) | 358, 664, 714, 962, 1232, 1616 |
| Fsp4HI | GCNGC | 3 cut(s) | 400, 800, 1092 |
| FspBI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| GlaI | GCGC | 1 cut(s) | 80 |
| GluI | GCNGC | 3 cut(s) | 400, 800, 1092 |
| GsuI | CTGGAG | 1 cut(s) | 1107 |
| HaeIII | GGCC | 4 cut(s) | 655, 763, 1139, 1265 |
| HapII | CCGG | 5 cut(s) | 96, 197, 521, 534, 1740 |
| HgaI | GACGC | 1 cut(s) | 188 |
| HhaI | GCGC | 1 cut(s) | 81 |
| Hin1II | CATG | 8 cut(s) | 265, 547, 1018, 1232, 1274, 1394, 1411, 1705 |
| Hin6I | GCGC | 1 cut(s) | 79 |
| HinP1I | GCGC | 1 cut(s) | 79 |
| HincII | GTYRAC | 1 cut(s) | 986 |
| HindII | GTYRAC | 1 cut(s) | 986 |
| HindIII | AAGCTT | 1 cut(s) | 125 |
| HinfI | GANTC | 7 cut(s) | 70, 208, 288, 457, 1108, 1498, 1558 |
| HpaII | CCGG | 5 cut(s) | 96, 197, 521, 534, 1740 |
| HphI | GGTGA | 2 cut(s) | 535, 659 |
| Hpy166II | GTNNAC | 6 cut(s) | 561, 986, 1072, 1150, 1166, 1435 |
| Hpy188I | TCNGA | 6 cut(s) | 25, 66, 247, 462, 1032, 1695 |
| Hpy8I | GTNNAC | 6 cut(s) | 561, 986, 1072, 1150, 1166, 1435 |
| Hpy99I | CGWCG | 1 cut(s) | 51 |
| HpyAV | CCTTC | 7 cut(s) | 158, 217, 644, 850, 1163, 1273, 1716 |
| HpyCH4III | ACNGT | 2 cut(s) | 168, 1069 |
| HpyCH4IV | ACGT | 4 cut(s) | 708, 1074, 1215, 1431 |
| HpyCH4V | TGCA | 9 cut(s) | 214, 511, 616, 692, 727, 897, 1540, 1607, 1619 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 59, 694, 799, 1046, 1091 |
| HpyF3I | CTNAG | 6 cut(s) | 24, 63, 186, 201, 1506, 1575 |
| HpySE526I | ACGT | 4 cut(s) | 708, 1074, 1215, 1431 |
| Hsp92II | CATG | 8 cut(s) | 265, 547, 1018, 1232, 1274, 1394, 1411, 1705 |
| HspAI | GCGC | 1 cut(s) | 79 |
| Kzo9I | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| LguI | GCTCTTC | 1 cut(s) | 1075 |
| LmnI | GCTCC | 4 cut(s) | 187, 301, 685, 1088 |
| Lsp1109I | GCAGC | 2 cut(s) | 811, 1103 |
| LweI | GCATC | 5 cut(s) | 170, 621, 736, 1594, 1699 |
| MaeI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| MaeII | ACGT | 4 cut(s) | 708, 1074, 1215, 1431 |
| MaeIII | GTNAC | 3 cut(s) | 176, 1063, 1745 |
| MalI | GATC | 6 cut(s) | 191, 249, 1145, 1284, 1587, 1738 |
| MboI | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| MfeI | CAATTG | 1 cut(s) | 1707 |
| MflI | RGATCY | 1 cut(s) | 1736 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MlsI | TGGCCA | 1 cut(s) | 1265 |
| MluCI | AATT | 9 cut(s) | 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707 |
| MluNI | TGGCCA | 1 cut(s) | 1265 |
| MmeI | TCCRAC | 2 cut(s) | 93, 299 |
| Mox20I | TGGCCA | 1 cut(s) | 1265 |
| MroXI | GAANNNNTTC | 2 cut(s) | 456, 720 |
| MscI | TGGCCA | 1 cut(s) | 1265 |
| MslI | CAYNNNNRTG | 1 cut(s) | 506 |
| Msp20I | TGGCCA | 1 cut(s) | 1265 |
| MspA1I | CMGCKG | 1 cut(s) | 802 |
| MspI | CCGG | 5 cut(s) | 96, 197, 521, 534, 1740 |
| MspR9I | CCNGG | 4 cut(s) | 97, 535, 682, 846 |
| MunI | CAATTG | 1 cut(s) | 1707 |
| MvaI | CCWGG | 2 cut(s) | 682, 846 |
| MvnI | CGCG | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 59, 694, 799, 1046, 1091 |
| NciI | CCSGG | 2 cut(s) | 97, 535 |
| NdeII | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| NlaIII | CATG | 8 cut(s) | 265, 547, 1018, 1232, 1274, 1394, 1411, 1705 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 1738 |
| NmuCI | GTSAC | 1 cut(s) | 176 |
| NruI | TCGCGA | 1 cut(s) | 273 |
| NspI | RCATGY | 2 cut(s) | 1394, 1411 |
| PagI | TCATGA | 1 cut(s) | 1228 |
| PceI | AGGCCT | 1 cut(s) | 763 |
| PciI | ACATGT | 1 cut(s) | 1390 |
| PciSI | GCTCTTC | 1 cut(s) | 1075 |
| PdmI | GAANNNNTTC | 2 cut(s) | 456, 720 |
| PfeI | GAWTC | 7 cut(s) | 70, 208, 288, 457, 1108, 1498, 1558 |
| PkrI | GCNGC | 3 cut(s) | 401, 801, 1093 |
| PscI | ACATGT | 1 cut(s) | 1390 |
| PshBI | ATTAAT | 2 cut(s) | 639, 1398 |
| Psp6I | CCWGG | 2 cut(s) | 680, 844 |
| PspGI | CCWGG | 2 cut(s) | 680, 844 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 1738 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| PsuI | RGATCY | 1 cut(s) | 1736 |
| PvuII | CAGCTG | 1 cut(s) | 802 |
| RruI | TCGCGA | 1 cut(s) | 273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 506 |
| SapI | GCTCTTC | 1 cut(s) | 1075 |
| SatI | GCNGC | 3 cut(s) | 400, 800, 1092 |
| Sau3AI | GATC | 6 cut(s) | 189, 247, 1143, 1282, 1585, 1736 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| ScrFI | CCNGG | 4 cut(s) | 97, 535, 682, 846 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SfaNI | GCATC | 5 cut(s) | 170, 621, 736, 1594, 1699 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 506 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| Sse9I | AATT | 9 cut(s) | 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707 |
| SseBI | AGGCCT | 1 cut(s) | 763 |
| SsiI | CCGC | 5 cut(s) | 343, 399, 1020, 1623, 1650 |
| SspI | AATATT | 1 cut(s) | 1194 |
| SspMI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| StuI | AGGCCT | 1 cut(s) | 763 |
| StyD4I | CCNGG | 4 cut(s) | 95, 533, 680, 844 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 2 cut(s) | 168, 1069 |
| TaiI | ACGT | 4 cut(s) | 711, 1077, 1218, 1434 |
| TaqI | TCGA | 3 cut(s) | 122, 350, 888 |
| TasI | AATT | 9 cut(s) | 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707 |
| TauI | GCSGC | 1 cut(s) | 402 |
| TfiI | GAWTC | 7 cut(s) | 70, 208, 288, 457, 1108, 1498, 1558 |
| TscAI | CASTG | 4 cut(s) | 42, 386, 1266, 1354 |
| TseFI | GTSAC | 1 cut(s) | 176 |
| TseI | GCWGC | 2 cut(s) | 799, 1091 |
| Tsp45I | GTSAC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 3 cut(s) | 896, 1217, 1477 |
| TspGWI | ACGGA | 1 cut(s) | 314 |
| TspRI | CASTG | 4 cut(s) | 42, 386, 1266, 1354 |
| VspI | ATTAAT | 2 cut(s) | 639, 1398 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| XapI | RAATTY | 2 cut(s) | 427, 1026 |
| XbaI | TCTAGA | 1 cut(s) | 1718 |
| XceI | RCATGY | 2 cut(s) | 1394, 1411 |
| XmiI | GTMKAC | 1 cut(s) | 1165 |
| XmnI | GAANNNNTTC | 2 cut(s) | 456, 720 |
| XspI | CTAG | 3 cut(s) | 144, 1685, 1719 |