MD17G1216300.v1.1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
26308462 .. 26311331
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1216300.v1.1.491

Sequence Viewer

Length: 1764 bp
ATGGAAGAAGAAGATGATTATTCTGAGTATGTTCCAGTGGCGAAGCGACGAGCAATGGAGGCTCAGAAGATTCTTCAGCGCAAGGGGAAGTCTTCCGGGCTTGAGGAAGAGTTGGAGAAATCGAAGCTTGCTGAAGCAAAACCTAGCCTTCTTGTAAAAGCATCACAGTTGAAGCGTGACGCTCCTGAGATCACTCCGGCTGAGGAGATTCTGCAACAAGAGAAGGAAATGATTGAGCACTTATCAGATCGCAAAACCCTCATGTCAGTTCGCGAATTGGCAAAGGGAATCACTTACACGGAGCCTTTACTGACAGGTTGGAAGCCCCCATTGAATATAAGGCGGATGTCGAGCCAGCAATGTGATTTTATTAGAAAGCAGTGGCACATCATAGTTAGCGGCGATGATATTCCACCACCTATTAAGAATTTTAAGGATATGAGATTTCCTGAACCGATTCTGAAGAAGTTGAAAACCAAGGGGATTGTTCAGCCAACCCCCATTCAGGTGCAAGGTCTTCCGGTGATTTTAACCGGGAGGGACATGATTGGTATTGCGTTTACGGGTTCAGGAAAGACATTGGTTTTTGTGTTGCCGTTGATTATGATAGCATTGCAGGAGGAGATTATGATGCCAATTAATCAAGGTGAAGGGCCTTTTGGATTGATTATTTGCCCATCCAGGGAGCTTGCAAGGCAAACTTATGACGTGGTGGAAGAGTTTCTGCATCCTATGAGAGAGGCTGGATATCCAGAAATAAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGCGTTCGCAGCTGGAAATTGTGAAAAAAGGTGTCCATATAGTTGTTGCTACTCCTGGGAGGTTGAAGGATATGCTGGCAAAGAAAAAAATGAACCTCGATAGTTGCAGATATTTAACTTTGGACGAGGCAGATAGATTGGTAGATTTGGGCTTTGAGGATGACATAAGAGAAGTTTTTGACCACTTTAAAGGTCAACGACAAACACTTCTATTTTCAGCCACCATGCCCGCAAAAATTCAGAACTTTGCTAAAAGTGCTTTGGTAAAGCCTGTAACTGTAAACGTGGGAAGAGCTGGAGCAGCAAATCTTGATGTGATTCAAGAGGTTGAGTATGTGAAGCAAGAGGCCAAGATCGTTTACCTTCTTGAATGTCTACAAAAGACCCCACCTCCTGTTCTAATATTTTGTGAAAACAAAGCTGACGTGGATGATATTCATGAGTATCTTCTGTTAAAAGGAGTGGAAGCAGTGGCCATACATGGAGGGAAGGATCAGGAAGAGAGAGAGTATGCCATTTCTTCTTTTAAGGCAGGGAAGAAAGATGTTTTGGTTGCCACTGATGTTGCCTCAAAGGGTTTGGATTTTCCTGACATTCAACATGTCATTAATTATGACATGCCACCAGAAATTGAAAACTACGTTCACAGGATTGGACGAACAGGTAGATGTGGCAAGACTGGAATAGCAACAACTTTCATAAACAAGAATCAAACTGAGACAACACTTCTTGATTTGAAACACCTCCTGCAAGAGGCAAAACAAAGGATTCCACCCGTTTTGGCTGAGCTTAATGATCCAATGGAAGATGTGGATGCAATTACAAATGCAAGCGGGGTTAAGGGTTGTGCTTTCTGTGGCGGTCTTGGTCATCGTATCAAAGATTGCCCCAAACTAGAGCATCAGAAAAGCATGGCAATTGCCAGCTCTAGAAGGGATTATTTTGGATCCGGTGGTTACAGAGGGGAAATATAA

Protein Analysis

588

Amino Acids

65.73

Weight (kDa)

6.37

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 166 - 345 3.1e-41 DEAD/DEAH box helicase
Helicase_C PF00271 381 - 488 9.8e-32 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010967)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 273
AciI CCGC 5 cut(s) 343, 399, 1020, 1623, 1650
AclWI GGATC 4 cut(s) 1290, 1580, 1731, 1744
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 2 cut(s) 427, 1026
AcuI CTGAAG 3 cut(s) 59, 153, 482
AfiI CCNNNNNNNGG 3 cut(s) 505, 682, 1543
AflIII ACRYGT 1 cut(s) 1390
AgsI TTSAA 9 cut(s) 172, 334, 472, 856, 1112, 1160, 1388, 1424, 1528
AjiI CACGTC 2 cut(s) 709, 1216
AjnI CCWGG 2 cut(s) 680, 844
AjuI GAANNNNNNNTTGG 4 cut(s) 642, 674, 1322, 1354
AluBI AGCT 7 cut(s) 127, 688, 802, 1085, 1211, 1579, 1716
AluI AGCT 7 cut(s) 127, 688, 802, 1085, 1211, 1579, 1716
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 1502
AlwI GGATC 4 cut(s) 1290, 1580, 1731, 1744
AoxI GGCC 4 cut(s) 653, 761, 1137, 1263
ApeKI GCWGC 2 cut(s) 799, 1091
ApoI RAATTY 2 cut(s) 427, 1026
AseI ATTAAT 2 cut(s) 639, 1398
Asp700I GAANNNNTTC 2 cut(s) 456, 720
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 653
AsuC2I CCSGG 2 cut(s) 97, 535
AsuHPI GGTGA 2 cut(s) 535, 659
BalI TGGCCA 1 cut(s) 1265
BamHI GGATCC 1 cut(s) 1736
BbsI GAAGAC 2 cut(s) 84, 509
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 811, 1103
BccI CCATC 1 cut(s) 685
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 2 cut(s) 682, 846
BcnI CCSGG 2 cut(s) 97, 535
BcoDI GTCTC 1 cut(s) 1502
BfaI CTAG 3 cut(s) 144, 1685, 1719
BisI GCNGC 3 cut(s) 400, 800, 1092
BlpI GCTNAGC 1 cut(s) 1575
BlsI GCNGC 3 cut(s) 401, 801, 1093
Bme1390I CCNGG 4 cut(s) 97, 535, 682, 846
BmgBI CACGTC 2 cut(s) 709, 1216
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 2 cut(s) 303, 1738
BmrFI CCNGG 4 cut(s) 97, 535, 682, 846
BmsI GCATC 5 cut(s) 170, 621, 736, 1594, 1699
BpiI GAAGAC 2 cut(s) 84, 509
BpmI CTGGAG 1 cut(s) 1107
Bpu10I CCTNAGC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 1575
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 2 cut(s) 97, 535
BsaJI CCNNGG 3 cut(s) 477, 681, 845
BsaWI WCCGGW 2 cut(s) 520, 1739
BsaXI ACNNNNNCTCC 2 cut(s) 1165, 1195
Bsc4I CCNNNNNNNGG 3 cut(s) 505, 682, 1543
Bse1I ACTGG 2 cut(s) 35, 1474
Bse3DI GCAATG 3 cut(s) 60, 365, 611
BseBI CCWGG 2 cut(s) 682, 846
BseDI CCNNGG 3 cut(s) 477, 681, 845
BseGI GGATG 6 cut(s) 351, 677, 727, 955, 1225, 1609
BseLI CCNNNNNNNGG 3 cut(s) 505, 682, 1543
BseMI GCAATG 3 cut(s) 60, 365, 611
BseMII CTCAG 6 cut(s) 15, 77, 177, 192, 1497, 1566
BseNI ACTGG 2 cut(s) 35, 1474
BseRI GAGGAG 2 cut(s) 218, 635
BseXI GCAGC 2 cut(s) 811, 1103
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 4 cut(s) 655, 763, 1139, 1265
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 5 cut(s) 96, 197, 521, 534, 1740
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 505, 682, 1543
BsmAI GTCTC 1 cut(s) 1502
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 4 cut(s) 655, 763, 1139, 1265
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
Bsp1720I GCTNAGC 1 cut(s) 1575
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 5 cut(s) 343, 399, 1020, 1623, 1650
BspANI GGCC 4 cut(s) 655, 763, 1139, 1265
BspCNI CTCAG 6 cut(s) 16, 76, 178, 193, 1498, 1567
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 2 cut(s) 303, 1738
BspPI GGATC 4 cut(s) 1290, 1580, 1731, 1744
BspQI GCTCTTC 1 cut(s) 1075
BsrDI GCAATG 3 cut(s) 60, 365, 611
BsrI ACTGG 2 cut(s) 35, 1474
BssECI CCNNGG 3 cut(s) 477, 681, 845
BssMI GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 682, 846
Bst4CI ACNGT 2 cut(s) 168, 1069
Bst6I CTCTTC 4 cut(s) 102, 711, 1075, 1284
BstC8I GCNNGC 7 cut(s) 129, 356, 690, 867, 1020, 1621, 1714
BstDEI CTNAG 6 cut(s) 24, 63, 186, 201, 1506, 1575
BstENI CCTNNNNNAGG 1 cut(s) 1541
BstF5I GGATG 6 cut(s) 351, 677, 727, 955, 1225, 1609
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 6 cut(s) 192, 250, 1146, 1285, 1588, 1739
BstMAI GTCTC 1 cut(s) 1502
BstMBI GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
BstMWI GCNNNNNNNGC 5 cut(s) 59, 694, 799, 1046, 1091
BstNI CCWGG 2 cut(s) 682, 846
BstNSI RCATGY 2 cut(s) 1394, 1411
BstSCI CCNGG 4 cut(s) 95, 533, 680, 844
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 811, 1103
BstV2I GAAGAC 2 cut(s) 84, 509
BstX2I RGATCY 1 cut(s) 1736
BstYI RGATCY 1 cut(s) 1736
BsuRI GGCC 4 cut(s) 655, 763, 1139, 1265
BtgZI GCGATG 1 cut(s) 417
BtrI CACGTC 2 cut(s) 709, 1216
BtsCI GGATG 6 cut(s) 351, 677, 727, 955, 1225, 1609
BtsI GCAGTG 2 cut(s) 386, 1266
BtsIMutI CAGTG 4 cut(s) 42, 386, 1266, 1347
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 7 cut(s) 129, 356, 690, 867, 1020, 1621, 1714
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 188
CspCI CAANNNNNGTGG 4 cut(s) 1336, 1371, 1551, 1586
CviAII CATG 8 cut(s) 262, 544, 1015, 1229, 1271, 1391, 1408, 1702
DdeI CTNAG 6 cut(s) 24, 63, 186, 201, 1506, 1575
DpnI GATC 6 cut(s) 191, 249, 1145, 1284, 1587, 1738
DpnII GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
DraI TTTAAA 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 4 cut(s) 102, 711, 1075, 1284
EarI CTCTTC 4 cut(s) 102, 711, 1075, 1284
EciI GGCGGA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 763
Eco32I GATATC 1 cut(s) 749
Eco57I CTGAAG 3 cut(s) 59, 153, 482
EcoNI CCTNNNNNAGG 1 cut(s) 1541
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 680, 844
EcoRV GATATC 1 cut(s) 749
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 8 cut(s) 265, 547, 1018, 1232, 1274, 1394, 1411, 1705
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 1 cut(s) 554
FatI CATG 8 cut(s) 261, 543, 1014, 1228, 1270, 1390, 1407, 1701
FauI CCCGC 2 cut(s) 1027, 1616
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 400, 800, 1092
FokI GGATG 6 cut(s) 358, 664, 714, 962, 1232, 1616
Fsp4HI GCNGC 3 cut(s) 400, 800, 1092
FspBI CTAG 3 cut(s) 144, 1685, 1719
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 400, 800, 1092
GsuI CTGGAG 1 cut(s) 1107
HaeIII GGCC 4 cut(s) 655, 763, 1139, 1265
HapII CCGG 5 cut(s) 96, 197, 521, 534, 1740
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 81
Hin1II CATG 8 cut(s) 265, 547, 1018, 1232, 1274, 1394, 1411, 1705
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 986
HindII GTYRAC 1 cut(s) 986
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 7 cut(s) 70, 208, 288, 457, 1108, 1498, 1558
HpaII CCGG 5 cut(s) 96, 197, 521, 534, 1740
HphI GGTGA 2 cut(s) 535, 659
Hpy166II GTNNAC 6 cut(s) 561, 986, 1072, 1150, 1166, 1435
Hpy188I TCNGA 6 cut(s) 25, 66, 247, 462, 1032, 1695
Hpy8I GTNNAC 6 cut(s) 561, 986, 1072, 1150, 1166, 1435
Hpy99I CGWCG 1 cut(s) 51
HpyAV CCTTC 7 cut(s) 158, 217, 644, 850, 1163, 1273, 1716
HpyCH4III ACNGT 2 cut(s) 168, 1069
HpyCH4IV ACGT 4 cut(s) 708, 1074, 1215, 1431
HpyCH4V TGCA 9 cut(s) 214, 511, 616, 692, 727, 897, 1540, 1607, 1619
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 694, 799, 1046, 1091
HpyF3I CTNAG 6 cut(s) 24, 63, 186, 201, 1506, 1575
HpySE526I ACGT 4 cut(s) 708, 1074, 1215, 1431
Hsp92II CATG 8 cut(s) 265, 547, 1018, 1232, 1274, 1394, 1411, 1705
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
LguI GCTCTTC 1 cut(s) 1075
LmnI GCTCC 4 cut(s) 187, 301, 685, 1088
Lsp1109I GCAGC 2 cut(s) 811, 1103
LweI GCATC 5 cut(s) 170, 621, 736, 1594, 1699
MaeI CTAG 3 cut(s) 144, 1685, 1719
MaeII ACGT 4 cut(s) 708, 1074, 1215, 1431
MaeIII GTNAC 3 cut(s) 176, 1063, 1745
MalI GATC 6 cut(s) 191, 249, 1145, 1284, 1587, 1738
MboI GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
MfeI CAATTG 1 cut(s) 1707
MflI RGATCY 1 cut(s) 1736
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 1265
MluCI AATT 9 cut(s) 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707
MluNI TGGCCA 1 cut(s) 1265
MmeI TCCRAC 2 cut(s) 93, 299
Mox20I TGGCCA 1 cut(s) 1265
MroXI GAANNNNTTC 2 cut(s) 456, 720
MscI TGGCCA 1 cut(s) 1265
MslI CAYNNNNRTG 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 1265
MspA1I CMGCKG 1 cut(s) 802
MspI CCGG 5 cut(s) 96, 197, 521, 534, 1740
MspR9I CCNGG 4 cut(s) 97, 535, 682, 846
MunI CAATTG 1 cut(s) 1707
MvaI CCWGG 2 cut(s) 682, 846
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 5 cut(s) 59, 694, 799, 1046, 1091
NciI CCSGG 2 cut(s) 97, 535
NdeII GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
NlaIII CATG 8 cut(s) 265, 547, 1018, 1232, 1274, 1394, 1411, 1705
NlaIV GGNNCC 2 cut(s) 303, 1738
NmuCI GTSAC 1 cut(s) 176
NruI TCGCGA 1 cut(s) 273
NspI RCATGY 2 cut(s) 1394, 1411
PagI TCATGA 1 cut(s) 1228
PceI AGGCCT 1 cut(s) 763
PciI ACATGT 1 cut(s) 1390
PciSI GCTCTTC 1 cut(s) 1075
PdmI GAANNNNTTC 2 cut(s) 456, 720
PfeI GAWTC 7 cut(s) 70, 208, 288, 457, 1108, 1498, 1558
PkrI GCNGC 3 cut(s) 401, 801, 1093
PscI ACATGT 1 cut(s) 1390
PshBI ATTAAT 2 cut(s) 639, 1398
Psp6I CCWGG 2 cut(s) 680, 844
PspGI CCWGG 2 cut(s) 680, 844
PspN4I GGNNCC 2 cut(s) 303, 1738
PspPI GGNCC 1 cut(s) 653
PsuI RGATCY 1 cut(s) 1736
PvuII CAGCTG 1 cut(s) 802
RruI TCGCGA 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 1075
SatI GCNGC 3 cut(s) 400, 800, 1092
Sau3AI GATC 6 cut(s) 189, 247, 1143, 1282, 1585, 1736
Sau96I GGNCC 1 cut(s) 653
ScrFI CCNGG 4 cut(s) 97, 535, 682, 846
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 5 cut(s) 170, 621, 736, 1594, 1699
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 9 cut(s) 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 5 cut(s) 343, 399, 1020, 1623, 1650
SspI AATATT 1 cut(s) 1194
SspMI CTAG 3 cut(s) 144, 1685, 1719
StuI AGGCCT 1 cut(s) 763
StyD4I CCNGG 4 cut(s) 95, 533, 680, 844
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 168, 1069
TaiI ACGT 4 cut(s) 711, 1077, 1218, 1434
TaqI TCGA 3 cut(s) 122, 350, 888
TasI AATT 9 cut(s) 275, 427, 636, 807, 1026, 1399, 1419, 1608, 1707
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 7 cut(s) 70, 208, 288, 457, 1108, 1498, 1558
TscAI CASTG 4 cut(s) 42, 386, 1266, 1354
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 799, 1091
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 896, 1217, 1477
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 4 cut(s) 42, 386, 1266, 1354
VspI ATTAAT 2 cut(s) 639, 1398
XagI CCTNNNNNAGG 1 cut(s) 1541
XapI RAATTY 2 cut(s) 427, 1026
XbaI TCTAGA 1 cut(s) 1718
XceI RCATGY 2 cut(s) 1394, 1411
XmiI GTMKAC 1 cut(s) 1165
XmnI GAANNNNTTC 2 cut(s) 456, 720
XspI CTAG 3 cut(s) 144, 1685, 1719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.