pycom17g22090

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
20488885 .. 20491103
2219 bp
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UTR
Exon/CDS
Intron
pycom17g22090.2

Sequence Viewer

Length: 1710 bp
ATGGAGGCTCAGAAGATTCTTCAGCGCAAGGGGAAGTCTTCCGGGCTTGAGGAAGAGTTGGAGAAATCGATGCTTGCTGAAGCAAAACCTAGCCTTCTTGTAAAAGCATCACAGTTGAAGCGTGATGCTCCTGAGATTACTCCAGCTGAGGAGATTCTGCAACAAGAGAAGGAAATGATTGAGCACTTATCAGATCGCAAAACCCTCATGTCAGTTCGCGAATTGGCAAAGGGAATCACTTACACTGAGCCTTTACTGACAGGTTGGAAGCCCCCATTGAATATAAGGCGGATGTCGAGCCAGCAATGTGATTTTATTAGAAAGCAGTGGCACATCATAGTTAGCGGCGATGATATTCCACCACCTACTAAGAATTTTAAGGATATGAGATTTCCTGAACCGATTCTGAAGAAGTTGAAAACCAAGGGGATTGTTCAGCCAACCCCCATTCAGGTGCAAGGTCTTCCGGTGATTTTAACCGGGAGAGACATGATTGGTATTGCGTTTACGGGTTCAGGAAAGACATTGGTTTTTGTGTTGCCGTTGATTATGATAGCATTGCAGGAGGAGATTATGATGCCAATTAATCAAGGTGAAGGGCCTTTTGGATTGATTATTTGCCCATCCAGGGAGCTTGCAAGGCAAACTTATGACGTGGTGGAAGAGTTTCTGCATCCTATGAGAGAGGCTGGATATCCAGAAATAAGGCCGTTGCTTTGTATTGGTGGAGTGGATATGCGTTCACAGCTGGAAATTGTGAAAAAAGGTGTCCATATAGTTGTTGCTACTCCTGGGAGGTTGAAGGATATGCTGGCAAAGAAAAAAATGAACCTCGATAGTTGCAGATATCTAACTTTGGACGAGGCAGATAGATTGGTAGATTTGGGCTTTGAGGATGACATAAGAGAAGTTTTTGACCACTTTAAAGGTCAACGACAAACACTTCTATTTTCAGCCACCATGCCCGCAAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTAACTGTAAATGTGGGAAGAGCTGGAGCAGCAAATCTTGATGTGATTCAAGAGGTTGAGTATGTGAAGCAAGAGGCCAAGATCGATTACCTTCTTGAATGTCTACAAAAGACCCCACCACCTGTTCTAATATTTTGTGAAAACAAAGCTGATGTGGATGATATTCATGAGTATCTTCTGTTAAAAGGAGTGGAAGCAGTGGCCATACATGGAGGGAAGGATCAGGAAGAGAGAGAGTATGCCATTTCTTCTTTTAAGGCAGGGAAGAAAGATGTTTTGGTTGCCACTGATGTTGCCTCAAAGGGTTTGGATTTTCCTGACATTCAACATGTCATTAATTATGACATGCCACCAGAAATTGAAAACTACGTTCACAGGATTGGACGAACAGGTAGATGTGGCAAGACTGGAATAGCAACAACTTTTATAAACAAGAATCAAACTGAGACAACACTTCTTGATTTGAAACACCTCCTGCAAGAGGCAAAACAAAGGATTCCACCCGTTTTGGCTGAGCTTAATGATCCAATGGAAGATGTGGATGCAATTACAAATGCAAGCGGGGTTAAGGGTTGTGCTTACTGCGGTGGTCTTGGTCATCGTATCAAAGATTGCCCCAAACTAGAGCATCAGAAAAGCATGGCAATTGCCAGCTCTAGAAGGGATTATTTTGGATCCGGTGGTTACAGAGGGGAAATATAA

Protein Analysis

570

Amino Acids

63.62

Weight (kDa)

6.5

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010967)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1436
AccI GTMKAC 1 cut(s) 1111
AccII CGCG 1 cut(s) 219
AciI CCGC 5 cut(s) 289, 345, 966, 1569, 1593
AclWI GGATC 4 cut(s) 1236, 1526, 1677, 1690
AcoI YGGCCR 1 cut(s) 1209
AcsI RAATTY 2 cut(s) 373, 972
AcuI CTGAAG 3 cut(s) 5, 99, 428
AfiI CCNNNNNNNGG 3 cut(s) 451, 628, 1489
AflIII ACRYGT 1 cut(s) 1336
AgsI TTSAA 9 cut(s) 118, 280, 418, 802, 1058, 1106, 1334, 1370, 1474
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 2 cut(s) 626, 790
AjuI GAANNNNNNNTTGG 4 cut(s) 588, 620, 1268, 1300
AluBI AGCT 7 cut(s) 146, 634, 748, 1031, 1157, 1525, 1662
AluI AGCT 7 cut(s) 146, 634, 748, 1031, 1157, 1525, 1662
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 480, 1448
AlwI GGATC 4 cut(s) 1236, 1526, 1677, 1690
AoxI GGCC 4 cut(s) 599, 707, 1083, 1209
ApeKI GCWGC 1 cut(s) 1037
ApoI RAATTY 2 cut(s) 373, 972
AseI ATTAAT 2 cut(s) 585, 1344
Asp700I GAANNNNTTC 2 cut(s) 402, 666
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 2 cut(s) 43, 481
AsuHPI GGTGA 2 cut(s) 481, 605
BalI TGGCCA 1 cut(s) 1211
BamHI GGATCC 1 cut(s) 1682
BbsI GAAGAC 2 cut(s) 30, 455
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 1049
BccI CCATC 1 cut(s) 631
BceAI ACGGC 2 cut(s) 526, 694
BciT130I CCWGG 2 cut(s) 628, 792
BcnI CCSGG 2 cut(s) 43, 481
BcoDI GTCTC 2 cut(s) 480, 1448
BfaI CTAG 4 cut(s) 90, 987, 1631, 1665
BisI GCNGC 2 cut(s) 346, 1038
BlpI GCTNAGC 1 cut(s) 1521
BlsI GCNGC 2 cut(s) 347, 1039
Bme1390I CCNGG 4 cut(s) 43, 481, 628, 792
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 1684
BmrFI CCNGG 4 cut(s) 43, 481, 628, 792
BmsI GCATC 7 cut(s) 60, 115, 116, 567, 682, 1540, 1645
BpiI GAAGAC 2 cut(s) 30, 455
BpmI CTGGAG 2 cut(s) 126, 1053
Bpu10I CCTNAGC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 1521
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 43, 481
Bsa29I ATCGAT 2 cut(s) 68, 1092
BsaJI CCNNGG 3 cut(s) 423, 627, 791
BsaWI WCCGGW 2 cut(s) 466, 1685
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 628, 1489
Bse1I ACTGG 1 cut(s) 1420
Bse3DI GCAATG 2 cut(s) 311, 557
BseBI CCWGG 2 cut(s) 628, 792
BseCI ATCGAT 2 cut(s) 68, 1092
BseDI CCNNGG 3 cut(s) 423, 627, 791
BseGI GGATG 6 cut(s) 297, 623, 673, 901, 1171, 1555
BseLI CCNNNNNNNGG 3 cut(s) 451, 628, 1489
BseMI GCAATG 2 cut(s) 311, 557
BseMII CTCAG 6 cut(s) 23, 123, 138, 237, 1443, 1512
BseNI ACTGG 1 cut(s) 1420
BseRI GAGGAG 2 cut(s) 164, 581
BseXI GCAGC 1 cut(s) 1049
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 601, 709, 1085, 1211
BshVI ATCGAT 2 cut(s) 68, 1092
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 4 cut(s) 42, 467, 480, 1686
BslI CCNNNNNNNGG 3 cut(s) 451, 628, 1489
BsmAI GTCTC 2 cut(s) 480, 1448
BsnI GGCC 4 cut(s) 601, 709, 1085, 1211
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
Bsp1720I GCTNAGC 1 cut(s) 1521
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 5 cut(s) 289, 345, 966, 1569, 1593
BspANI GGCC 4 cut(s) 601, 709, 1085, 1211
BspCNI CTCAG 6 cut(s) 22, 124, 139, 238, 1444, 1513
BspDI ATCGAT 2 cut(s) 68, 1092
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 1 cut(s) 1684
BspPI GGATC 4 cut(s) 1236, 1526, 1677, 1690
BspQI GCTCTTC 1 cut(s) 1021
BsrDI GCAATG 2 cut(s) 311, 557
BsrI ACTGG 1 cut(s) 1420
BssECI CCNNGG 3 cut(s) 423, 627, 791
BssMI GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 628, 792
Bst4CI ACNGT 2 cut(s) 114, 1015
Bst6I CTCTTC 4 cut(s) 48, 657, 1021, 1230
BstC8I GCNNGC 7 cut(s) 75, 302, 636, 813, 966, 1567, 1660
BstDEI CTNAG 7 cut(s) 9, 132, 147, 246, 369, 1452, 1521
BstENI CCTNNNNNAGG 1 cut(s) 1487
BstF5I GGATG 6 cut(s) 297, 623, 673, 901, 1171, 1555
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 196, 1092, 1231, 1534, 1685
BstMAI GTCTC 2 cut(s) 480, 1448
BstMBI GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
BstMWI GCNNNNNNNGC 4 cut(s) 640, 745, 992, 1037
BstNI CCWGG 2 cut(s) 628, 792
BstNSI RCATGY 2 cut(s) 1340, 1357
BstSCI CCNGG 4 cut(s) 41, 479, 626, 790
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 1049
BstV2I GAAGAC 2 cut(s) 30, 455
BstX2I RGATCY 1 cut(s) 1682
BstYI RGATCY 1 cut(s) 1682
Bsu15I ATCGAT 2 cut(s) 68, 1092
BsuRI GGCC 4 cut(s) 601, 709, 1085, 1211
BsuTUI ATCGAT 2 cut(s) 68, 1092
BtgZI GCGATG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 6 cut(s) 297, 623, 673, 901, 1171, 1555
BtsI GCAGTG 2 cut(s) 332, 1212
BtsIMutI CAGTG 4 cut(s) 243, 332, 1212, 1293
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 7 cut(s) 75, 302, 636, 813, 966, 1567, 1660
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 599
ClaI ATCGAT 2 cut(s) 68, 1092
CspCI CAANNNNNGTGG 4 cut(s) 1282, 1317, 1497, 1532
CviAII CATG 8 cut(s) 208, 490, 961, 1175, 1217, 1337, 1354, 1648
DdeI CTNAG 7 cut(s) 9, 132, 147, 246, 369, 1452, 1521
DpnI GATC 5 cut(s) 195, 1091, 1230, 1533, 1684
DpnII GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
DraI TTTAAA 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 1209
Eam1104I CTCTTC 4 cut(s) 48, 657, 1021, 1230
EarI CTCTTC 4 cut(s) 48, 657, 1021, 1230
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 423
Eco32I GATATC 2 cut(s) 695, 848
Eco57I CTGAAG 3 cut(s) 5, 99, 428
EcoNI CCTNNNNNAGG 1 cut(s) 1487
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 626, 790
EcoRV GATATC 2 cut(s) 695, 848
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 8 cut(s) 211, 493, 964, 1178, 1220, 1340, 1357, 1651
FalI AAGNNNNNCTT 2 cut(s) 631, 663
FatI CATG 8 cut(s) 207, 489, 960, 1174, 1216, 1336, 1353, 1647
FauI CCCGC 2 cut(s) 973, 1562
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 2 cut(s) 346, 1038
FokI GGATG 6 cut(s) 304, 610, 660, 908, 1178, 1562
Fsp4HI GCNGC 2 cut(s) 346, 1038
FspBI CTAG 4 cut(s) 90, 987, 1631, 1665
GlaI GCGC 1 cut(s) 26
GluI GCNGC 2 cut(s) 346, 1038
GsuI CTGGAG 2 cut(s) 126, 1053
HaeIII GGCC 4 cut(s) 601, 709, 1085, 1211
HapII CCGG 4 cut(s) 42, 467, 480, 1686
HhaI GCGC 1 cut(s) 27
Hin1II CATG 8 cut(s) 211, 493, 964, 1178, 1220, 1340, 1357, 1651
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 932
HindII GTYRAC 1 cut(s) 932
HinfI GANTC 7 cut(s) 16, 154, 234, 403, 1054, 1444, 1504
HpaII CCGG 4 cut(s) 42, 467, 480, 1686
HphI GGTGA 2 cut(s) 481, 605
Hpy166II GTNNAC 5 cut(s) 507, 743, 932, 1112, 1381
Hpy188I TCNGA 5 cut(s) 12, 193, 408, 978, 1641
Hpy8I GTNNAC 5 cut(s) 507, 743, 932, 1112, 1381
HpyAV CCTTC 7 cut(s) 104, 163, 590, 796, 1109, 1219, 1662
HpyCH4III ACNGT 2 cut(s) 114, 1015
HpyCH4IV ACGT 2 cut(s) 654, 1377
HpyCH4V TGCA 9 cut(s) 160, 457, 562, 638, 673, 843, 1486, 1553, 1565
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 745, 992, 1037
HpyF3I CTNAG 7 cut(s) 9, 132, 147, 246, 369, 1452, 1521
HpySE526I ACGT 2 cut(s) 654, 1377
Hsp92II CATG 8 cut(s) 211, 493, 964, 1178, 1220, 1340, 1357, 1651
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 3 cut(s) 133, 631, 1034
Lsp1109I GCAGC 1 cut(s) 1049
LweI GCATC 7 cut(s) 60, 115, 116, 567, 682, 1540, 1645
MaeI CTAG 4 cut(s) 90, 987, 1631, 1665
MaeII ACGT 2 cut(s) 654, 1377
MaeIII GTNAC 2 cut(s) 1009, 1691
MalI GATC 5 cut(s) 195, 1091, 1230, 1533, 1684
MboI GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
MfeI CAATTG 1 cut(s) 1653
MflI RGATCY 1 cut(s) 1682
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 1211
MluCI AATT 9 cut(s) 221, 373, 582, 753, 972, 1345, 1365, 1554, 1653
MluNI TGGCCA 1 cut(s) 1211
MmeI TCCRAC 2 cut(s) 39, 245
Mox20I TGGCCA 1 cut(s) 1211
MroXI GAANNNNTTC 2 cut(s) 402, 666
MscI TGGCCA 1 cut(s) 1211
MseI TTAA 9 cut(s) 378, 476, 585, 924, 1190, 1263, 1344, 1527, 1575
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 1211
MspA1I CMGCKG 2 cut(s) 146, 748
MspI CCGG 4 cut(s) 42, 467, 480, 1686
MspR9I CCNGG 4 cut(s) 43, 481, 628, 792
MunI CAATTG 1 cut(s) 1653
MvaI CCWGG 2 cut(s) 628, 792
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 640, 745, 992, 1037
NciI CCSGG 2 cut(s) 43, 481
NdeII GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
NlaIII CATG 8 cut(s) 211, 493, 964, 1178, 1220, 1340, 1357, 1651
NlaIV GGNNCC 1 cut(s) 1684
NruI TCGCGA 1 cut(s) 219
NspI RCATGY 2 cut(s) 1340, 1357
PagI TCATGA 1 cut(s) 1174
PciI ACATGT 1 cut(s) 1336
PciSI GCTCTTC 1 cut(s) 1021
PdmI GAANNNNTTC 2 cut(s) 402, 666
PfeI GAWTC 7 cut(s) 16, 154, 234, 403, 1054, 1444, 1504
PkrI GCNGC 2 cut(s) 347, 1039
PscI ACATGT 1 cut(s) 1336
PshBI ATTAAT 2 cut(s) 585, 1344
PsiI TTATAA 1 cut(s) 1436
Psp6I CCWGG 2 cut(s) 626, 790
PspGI CCWGG 2 cut(s) 626, 790
PspN4I GGNNCC 1 cut(s) 1684
PspPI GGNCC 1 cut(s) 599
PsuI RGATCY 1 cut(s) 1682
PvuII CAGCTG 2 cut(s) 146, 748
RruI TCGCGA 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 9 cut(s) 378, 476, 585, 924, 1190, 1263, 1344, 1527, 1575
SatI GCNGC 2 cut(s) 346, 1038
Sau3AI GATC 5 cut(s) 193, 1089, 1228, 1531, 1682
Sau96I GGNCC 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 43, 481, 628, 792
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 7 cut(s) 60, 115, 116, 567, 682, 1540, 1645
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 9 cut(s) 221, 373, 582, 753, 972, 1345, 1365, 1554, 1653
SsiI CCGC 5 cut(s) 289, 345, 966, 1569, 1593
SspI AATATT 1 cut(s) 1140
SspMI CTAG 4 cut(s) 90, 987, 1631, 1665
StyD4I CCNGG 4 cut(s) 41, 479, 626, 790
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 114, 1015
TaiI ACGT 2 cut(s) 657, 1380
TaqI TCGA 4 cut(s) 68, 296, 834, 1092
TasI AATT 9 cut(s) 221, 373, 582, 753, 972, 1345, 1365, 1554, 1653
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 7 cut(s) 16, 154, 234, 403, 1054, 1444, 1504
Tru1I TTAA 9 cut(s) 378, 476, 585, 924, 1190, 1263, 1344, 1527, 1575
Tru9I TTAA 9 cut(s) 378, 476, 585, 924, 1190, 1263, 1344, 1527, 1575
TscAI CASTG 4 cut(s) 250, 332, 1212, 1300
TseI GCWGC 1 cut(s) 1037
TspDTI ATGAA 2 cut(s) 842, 1163
TspRI CASTG 4 cut(s) 250, 332, 1212, 1300
VspI ATTAAT 2 cut(s) 585, 1344
XagI CCTNNNNNAGG 1 cut(s) 1487
XapI RAATTY 2 cut(s) 373, 972
XbaI TCTAGA 1 cut(s) 1664
XceI RCATGY 2 cut(s) 1340, 1357
XmiI GTMKAC 1 cut(s) 1111
XmnI GAANNNNTTC 2 cut(s) 402, 666
XspI CTAG 4 cut(s) 90, 987, 1631, 1665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.