Prupe.3G092400_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
6903487 .. 6906565
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G092400.1

Sequence Viewer

Length: 1764 bp
ATGGAAGAGGAAGATGACTATTTTGAGTATGTACCTGTGGCAAAGCGGAGAGCTATGGAAGCCCAGAAGATTCTTCTGCGCAAGGGAAAATCTTCCGGCCTTGAAGAGGATTTGGAGAAATCAAAGCTTGCTGAAGCCAAACCTAGTCTCCTTGTTAAAGCATCACAGTTGAAGCGTGAAGCTCCTGAGATTACTCCAGCCGAGCAGATGGTGCAACAAGAGAAAGAAATGATTGAGAACTTATCGGATCGCAAAACGCTTATGTCAGTTCGTGAATTAGCAAAGGGAATCACTTATACGGACCCTATACCAACAGGTTGGAAATCCCCATTGCATATCAGAAGGATGCCAAGCAAGCAATGTGATTTGGTCCGCAAGCAGTGGCATATCATAGTTAGTGGTGAAGATGTTCCACCACCTATTAAGAATTTCAAGGATATGAGATTTCCTGAACCGATTCTGAAGATGTTGAAAACCAAGGGGATTGTTCAACCGACCCCTATTCAGGTGCAAGGCCTTCCAGTGATTTTATCAGGGAGGGATATGATTGGTATCGCATTTACGGGTTCAGGAAAGACATTGGTTTTTGTGTTGCCGTTAATTATGGTGGCATTGCAAGAGGAGATTATGATGCCAATTGTTCCAGGTGAAGGGCCTTTTGGATTGATTATTTGTCCATCAAGGGAGCTCGCAAGGCAGACTTATGAAGTGGTGGAAGAGTTTCTCATTCCTTTGAGAGAGGCTGGGTATCCAGAGATAAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGCGGTCACAGTTGGAGATTGTAAAGAAAGGCGTTCATATAGTTGTTGCTACTCCTGGAAGGTTGAAGGATATGCTTGCAAAGAAAAAAATGAATCTCAATAATTGCAGATATCTGACTTTGGATGAGGCAGATAGATTGGTAGATTTGGGCTTTGAGGATGACATACGAGAAGTGTTTGACCACTTTAAAGCTCAACGACAAACTCTCTTATTTTCAGCCACCATGCCCACAAAAATTCAGAACTTTGCTAAAAGTGCTTTGGTAAAACCTGTGCTTGTAAATGTGGGAAGAGCTGGAGCAGCAAATCTTGATGTGATTCAGGAGGTTGAGTATGTGAAGCAAGAGGCCAAGATTGTTTACCTTCTTGAATGTCTACAAAAGACCCCACCTCCTGTTCTAATATTTTGTGAAAACAAAGCTGATGTGGATGACATTCATGAATATCTTCTGTTAAAAGGAGTGGAAGCAGTGGCCATTCATGGAGGGAAGGATCAGGAAGAAAGAGAGTATGCCATTTCTTCCTTCAAGGCAGGGAAGAAAGATGTCTTGGTTGCCACTGATGTTGCCTCCAAGGGTTTGGATTTTCCTGATATTCAACATGTCATAAATTATGATATGCCACCAGAAATTGAAAACTATGTTCACAGGATTGGACGAACTGGAAGATGTGGCAAGACTGGAATAGCAACGACATTTATAAACAAGAATCAAACTGAGACAACTCTTCTTGATCTGAAGCATCTCTTGCAAGAGGCAAAACAAAGGATTCCACCTGTTTTGGCTGAGCTTAATGATCCAATGGAAGATGTGGATGCAATTACAGATGCAAGCGGAGTTAAGGGTTGTGCTTATTGTGGTGGGCTTGGTCATCGTATCCGTGATTGCCCCAAACTAGAGCATCAGAAAAGCATGGCAATTGCCAGCTCTAGAAGGGATTATTTTGGATCTGGTGGTTACAGAGGGGAAATATGA

Protein Analysis

588

Amino Acids

65.73

Weight (kDa)

6.47

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010967)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1490
Acc16I TGCGCA 1 cut(s) 80
AccI GTMKAC 1 cut(s) 1165
AciI CCGC 4 cut(s) 46, 373, 793, 1623
AclWI GGATC 4 cut(s) 255, 1290, 1580, 1744
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 2 cut(s) 427, 1026
AcuI CTGAAG 3 cut(s) 153, 482, 1547
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 106, 505, 650
AflIII ACRYGT 1 cut(s) 1390
AjnI CCWGG 2 cut(s) 643, 844
AjuI GAANNNNNNNTTGG 4 cut(s) 642, 674, 1322, 1354
AluBI AGCT 9 cut(s) 53, 127, 182, 688, 983, 1085, 1211, 1579, 1716
AluI AGCT 9 cut(s) 53, 127, 182, 688, 983, 1085, 1211, 1579, 1716
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 152, 1502
AlwI GGATC 4 cut(s) 255, 1290, 1580, 1744
AoxI GGCC 6 cut(s) 97, 514, 653, 761, 1137, 1263
ApeKI GCWGC 1 cut(s) 1091
ApoI RAATTY 2 cut(s) 427, 1026
Asp700I GAANNNNTTC 5 cut(s) 91, 408, 456, 720, 1236
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 3 cut(s) 301, 370, 653
AsuHPI GGTGA 2 cut(s) 413, 659
AvaII GGWCC 2 cut(s) 301, 370
BalI TGGCCA 1 cut(s) 1265
BanII GRGCYC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 1103
BccI CCATC 2 cut(s) 202, 685
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 2 cut(s) 645, 846
BciVI GTATCC 2 cut(s) 759, 1676
BcoDI GTCTC 2 cut(s) 152, 1502
BfaI CTAG 3 cut(s) 144, 1685, 1719
BfuI GTATCC 2 cut(s) 759, 1676
BisI GCNGC 1 cut(s) 1092
BlpI GCTNAGC 1 cut(s) 1575
BlsI GCNGC 1 cut(s) 1093
Bme1390I CCNGG 2 cut(s) 645, 846
Bme18I GGWCC 2 cut(s) 301, 370
BmgT120I GGNCC 3 cut(s) 301, 370, 653
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 645, 846
BmsI GCATC 7 cut(s) 170, 336, 621, 1540, 1594, 1606, 1699
BpmI CTGGAG 2 cut(s) 180, 1107
Bpu1102I GCTNAGC 1 cut(s) 1575
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 477, 1362
BsaXI ACNNNNNCTCC 6 cut(s) 132, 162, 1106, 1136, 1165, 1195
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 505, 650
Bse1I ACTGG 3 cut(s) 521, 1456, 1474
Bse3DI GCAATG 3 cut(s) 329, 365, 611
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 2 cut(s) 645, 846
BseDI CCNNGG 2 cut(s) 477, 1362
BseGI GGATG 5 cut(s) 351, 919, 955, 1225, 1609
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 3 cut(s) 106, 505, 650
BseMI GCAATG 3 cut(s) 329, 365, 611
BseMII CTCAG 3 cut(s) 177, 1497, 1566
BseNI ACTGG 3 cut(s) 521, 1456, 1474
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 1 cut(s) 1103
BseYI CCCAGC 1 cut(s) 743
BshFI GGCC 6 cut(s) 99, 516, 655, 763, 1139, 1265
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 106, 505, 650
BsmAI GTCTC 2 cut(s) 152, 1502
BsnI GGCC 6 cut(s) 99, 516, 655, 763, 1139, 1265
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
Bsp1720I GCTNAGC 1 cut(s) 1575
BspACI CCGC 4 cut(s) 46, 373, 793, 1623
BspANI GGCC 6 cut(s) 99, 516, 655, 763, 1139, 1265
BspCNI CTCAG 3 cut(s) 178, 1498, 1567
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 4 cut(s) 255, 1290, 1580, 1744
BspQI GCTCTTC 1 cut(s) 1075
BsrDI GCAATG 3 cut(s) 329, 365, 611
BsrI ACTGG 3 cut(s) 521, 1456, 1474
BssECI CCNNGG 2 cut(s) 477, 1362
BssMI GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
BssT1I CCWWGG 2 cut(s) 477, 1362
Bst2UI CCWGG 2 cut(s) 645, 846
Bst4CI ACNGT 2 cut(s) 168, 801
Bst6I CTCTTC 4 cut(s) 99, 711, 1075, 1521
BstAPI GCANNNNNTGC 2 cut(s) 211, 1537
BstC8I GCNNGC 7 cut(s) 129, 356, 377, 690, 867, 1621, 1714
BstDEI CTNAG 3 cut(s) 186, 1506, 1575
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 5 cut(s) 351, 919, 955, 1225, 1609
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 5 cut(s) 250, 1285, 1525, 1588, 1739
BstMAI GTCTC 2 cut(s) 152, 1502
BstMBI GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
BstMWI GCNNNNNNNGC 7 cut(s) 59, 211, 355, 694, 1046, 1091, 1537
BstNI CCWGG 2 cut(s) 645, 846
BstNSI RCATGY 1 cut(s) 1394
BstSCI CCNGG 2 cut(s) 643, 844
BstV1I GCAGC 1 cut(s) 1103
BstX2I RGATCY 1 cut(s) 1736
BstXI CCANNNNNNTGG 2 cut(s) 318, 1369
BstYI RGATCY 1 cut(s) 1736
BsuI GTATCC 2 cut(s) 759, 1676
BsuRI GGCC 6 cut(s) 99, 516, 655, 763, 1139, 1265
BtsCI GGATG 5 cut(s) 351, 919, 955, 1225, 1609
BtsI GCAGTG 2 cut(s) 386, 1266
BtsIMutI CAGTG 4 cut(s) 386, 528, 1266, 1347
Cac8I GCNNGC 7 cut(s) 129, 356, 377, 690, 867, 1621, 1714
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 3 cut(s) 301, 370, 653
Csp6I GTAC 1 cut(s) 32
CspCI CAANNNNNGTGG 4 cut(s) 1336, 1371, 1551, 1586
CviAII CATG 5 cut(s) 1015, 1229, 1271, 1391, 1702
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 186, 1506, 1575
DpnI GATC 5 cut(s) 249, 1284, 1524, 1587, 1738
DpnII GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
DraI TTTAAA 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 4 cut(s) 99, 711, 1075, 1521
EarI CTCTTC 4 cut(s) 99, 711, 1075, 1521
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 2 cut(s) 477, 1362
Eco147I AGGCCT 2 cut(s) 516, 763
Eco24I GRGCYC 1 cut(s) 690
Eco32I GATATC 1 cut(s) 902
Eco47I GGWCC 2 cut(s) 301, 370
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 153, 482, 1547
EcoICRI GAGCTC 1 cut(s) 688
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 643, 844
EcoRV GATATC 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 477, 1362
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 477, 1362
FaeI CATG 5 cut(s) 1018, 1232, 1274, 1394, 1705
FalI AAGNNNNNCTT 4 cut(s) 685, 717, 1520, 1552
FatI CATG 5 cut(s) 1014, 1228, 1270, 1390, 1701
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 1 cut(s) 1092
FokI GGATG 5 cut(s) 358, 926, 962, 1232, 1616
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 1 cut(s) 1092
FspBI CTAG 3 cut(s) 144, 1685, 1719
FspI TGCGCA 1 cut(s) 80
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 1092
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 2 cut(s) 180, 1107
HaeIII GGCC 6 cut(s) 99, 516, 655, 763, 1139, 1265
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 81
Hin1II CATG 5 cut(s) 1018, 1232, 1274, 1394, 1705
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 7 cut(s) 70, 288, 457, 883, 1108, 1498, 1558
HpaII CCGG 1 cut(s) 96
HphI GGTGA 2 cut(s) 413, 659
Hpy166II GTNNAC 3 cut(s) 1150, 1166, 1435
Hpy188I TCNGA 7 cut(s) 247, 341, 462, 906, 1032, 1527, 1695
Hpy8I GTNNAC 3 cut(s) 1150, 1166, 1435
HpyAV CCTTC 9 cut(s) 336, 527, 644, 843, 850, 1163, 1273, 1324, 1716
HpyCH4III ACNGT 2 cut(s) 168, 801
HpyCH4V TGCA 9 cut(s) 214, 334, 511, 616, 869, 897, 1540, 1607, 1619
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 211, 355, 694, 1046, 1091, 1537
HpyF3I CTNAG 3 cut(s) 186, 1506, 1575
Hsp92II CATG 5 cut(s) 1018, 1232, 1274, 1394, 1705
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
LguI GCTCTTC 1 cut(s) 1075
LmnI GCTCC 3 cut(s) 187, 685, 1088
Lsp1109I GCAGC 1 cut(s) 1103
LweI GCATC 7 cut(s) 170, 336, 621, 1540, 1594, 1606, 1699
MaeI CTAG 3 cut(s) 144, 1685, 1719
MaeIII GTNAC 2 cut(s) 795, 1745
MalI GATC 5 cut(s) 249, 1284, 1524, 1587, 1738
MboI GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
MfeI CAATTG 2 cut(s) 636, 1707
MflI RGATCY 1 cut(s) 1736
MhlI GDGCHC 1 cut(s) 690
MlsI TGGCCA 1 cut(s) 1265
MluNI TGGCCA 1 cut(s) 1265
MmeI TCCRAC 2 cut(s) 299, 783
Mox20I TGGCCA 1 cut(s) 1265
MroXI GAANNNNTTC 5 cut(s) 91, 408, 456, 720, 1236
MscI TGGCCA 1 cut(s) 1265
MseI TTAA 7 cut(s) 156, 423, 599, 978, 1244, 1581, 1629
Msp20I TGGCCA 1 cut(s) 1265
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 645, 846
MunI CAATTG 2 cut(s) 636, 1707
MvaI CCWGG 2 cut(s) 645, 846
MwoI GCNNNNNNNGC 7 cut(s) 59, 211, 355, 694, 1046, 1091, 1537
NdeII GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
NlaIII CATG 5 cut(s) 1018, 1232, 1274, 1394, 1705
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 795
NsbI TGCGCA 1 cut(s) 80
NspI RCATGY 1 cut(s) 1394
PagI TCATGA 1 cut(s) 1228
PceI AGGCCT 2 cut(s) 516, 763
PciI ACATGT 1 cut(s) 1390
PciSI GCTCTTC 1 cut(s) 1075
PdmI GAANNNNTTC 5 cut(s) 91, 408, 456, 720, 1236
PfeI GAWTC 7 cut(s) 70, 288, 457, 883, 1108, 1498, 1558
PfoI TCCNGGA 1 cut(s) 844
PkrI GCNGC 1 cut(s) 1093
PscI ACATGT 1 cut(s) 1390
PsiI TTATAA 1 cut(s) 1490
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 643, 844
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 2 cut(s) 643, 844
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 3 cut(s) 301, 370, 653
PsuI RGATCY 1 cut(s) 1736
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 690
SapI GCTCTTC 1 cut(s) 1075
SaqAI TTAA 7 cut(s) 156, 423, 599, 978, 1244, 1581, 1629
SatI GCNGC 1 cut(s) 1092
Sau3AI GATC 5 cut(s) 247, 1282, 1522, 1585, 1736
Sau96I GGNCC 3 cut(s) 301, 370, 653
ScrFI CCNGG 2 cut(s) 645, 846
SduI GDGCHC 1 cut(s) 690
SfaNI GCATC 7 cut(s) 170, 336, 621, 1540, 1594, 1606, 1699
SinI GGWCC 2 cut(s) 301, 370
SseBI AGGCCT 2 cut(s) 516, 763
SsiI CCGC 4 cut(s) 46, 373, 793, 1623
SspI AATATT 1 cut(s) 1194
SspMI CTAG 3 cut(s) 144, 1685, 1719
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 2 cut(s) 516, 763
StyD4I CCNGG 2 cut(s) 643, 844
StyI CCWWGG 2 cut(s) 477, 1362
TaaI ACNGT 2 cut(s) 168, 801
TfiI GAWTC 7 cut(s) 70, 288, 457, 883, 1108, 1498, 1558
Tru1I TTAA 7 cut(s) 156, 423, 599, 978, 1244, 1581, 1629
Tru9I TTAA 7 cut(s) 156, 423, 599, 978, 1244, 1581, 1629
TscAI CASTG 4 cut(s) 386, 528, 1266, 1354
TseFI GTSAC 1 cut(s) 795
TseI GCWGC 1 cut(s) 1091
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 6 cut(s) 720, 815, 896, 1217, 1245, 1259
TspGWI ACGGA 2 cut(s) 314, 1658
TspRI CASTG 4 cut(s) 386, 528, 1266, 1354
VpaK11BI GGWCC 2 cut(s) 301, 370
XagI CCTNNNNNAGG 1 cut(s) 104
XapI RAATTY 2 cut(s) 427, 1026
XbaI TCTAGA 1 cut(s) 1718
XceI RCATGY 1 cut(s) 1394
XmiI GTMKAC 1 cut(s) 1165
XmnI GAANNNNTTC 5 cut(s) 91, 408, 456, 720, 1236
XspI CTAG 3 cut(s) 144, 1685, 1719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.