DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33370 AT5G51280 |
| fragaria_vesca | FvH4_3g15960 FvH4_6g29290 |
| malus_domestica | MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1 |
| prunus_persica | Prupe.3G092400_v2.0.a1 |
| pyrus_communis | pycom17g22090 pycom808g00170 |
| rosa_chinensis | RchiOBHm_Chr2g0134471 |
| rosa_laevigata | RLG00000019394 |
| rosa_multiflora | Rmu_co8377539.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00110190 |
| rosa_rugosa | Rorug02G0317300 |
| rosa_samantha | Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000 |
| rosa_wichuraiana | Rw2G030130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1490 |
| Acc16I | TGCGCA | 1 cut(s) | 80 |
| AccI | GTMKAC | 1 cut(s) | 1165 |
| AciI | CCGC | 4 cut(s) | 46, 373, 793, 1623 |
| AclWI | GGATC | 4 cut(s) | 255, 1290, 1580, 1744 |
| AcoI | YGGCCR | 1 cut(s) | 1263 |
| AcsI | RAATTY | 2 cut(s) | 427, 1026 |
| AcuI | CTGAAG | 3 cut(s) | 153, 482, 1547 |
| AfaI | GTAC | 1 cut(s) | 33 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 106, 505, 650 |
| AflIII | ACRYGT | 1 cut(s) | 1390 |
| AjnI | CCWGG | 2 cut(s) | 643, 844 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 642, 674, 1322, 1354 |
| AluBI | AGCT | 9 cut(s) | 53, 127, 182, 688, 983, 1085, 1211, 1579, 1716 |
| AluI | AGCT | 9 cut(s) | 53, 127, 182, 688, 983, 1085, 1211, 1579, 1716 |
| Alw21I | GWGCWC | 1 cut(s) | 690 |
| Alw26I | GTCTC | 2 cut(s) | 152, 1502 |
| AlwI | GGATC | 4 cut(s) | 255, 1290, 1580, 1744 |
| AoxI | GGCC | 6 cut(s) | 97, 514, 653, 761, 1137, 1263 |
| ApeKI | GCWGC | 1 cut(s) | 1091 |
| ApoI | RAATTY | 2 cut(s) | 427, 1026 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 91, 408, 456, 720, 1236 |
| AspLEI | GCGC | 1 cut(s) | 81 |
| AspS9I | GGNCC | 3 cut(s) | 301, 370, 653 |
| AsuHPI | GGTGA | 2 cut(s) | 413, 659 |
| AvaII | GGWCC | 2 cut(s) | 301, 370 |
| BalI | TGGCCA | 1 cut(s) | 1265 |
| BanII | GRGCYC | 1 cut(s) | 690 |
| Bbv12I | GWGCWC | 1 cut(s) | 690 |
| BbvI | GCAGC | 1 cut(s) | 1103 |
| BccI | CCATC | 2 cut(s) | 202, 685 |
| BceAI | ACGGC | 1 cut(s) | 580 |
| BciT130I | CCWGG | 2 cut(s) | 645, 846 |
| BciVI | GTATCC | 2 cut(s) | 759, 1676 |
| BcoDI | GTCTC | 2 cut(s) | 152, 1502 |
| BfaI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| BfuI | GTATCC | 2 cut(s) | 759, 1676 |
| BisI | GCNGC | 1 cut(s) | 1092 |
| BlpI | GCTNAGC | 1 cut(s) | 1575 |
| BlsI | GCNGC | 1 cut(s) | 1093 |
| Bme1390I | CCNGG | 2 cut(s) | 645, 846 |
| Bme18I | GGWCC | 2 cut(s) | 301, 370 |
| BmgT120I | GGNCC | 3 cut(s) | 301, 370, 653 |
| BmiI | GGNNCC | 1 cut(s) | 303 |
| BmrFI | CCNGG | 2 cut(s) | 645, 846 |
| BmsI | GCATC | 7 cut(s) | 170, 336, 621, 1540, 1594, 1606, 1699 |
| BpmI | CTGGAG | 2 cut(s) | 180, 1107 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1575 |
| BsaBI | GATNNNNATC | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 2 cut(s) | 477, 1362 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 132, 162, 1106, 1136, 1165, 1195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 106, 505, 650 |
| Bse1I | ACTGG | 3 cut(s) | 521, 1456, 1474 |
| Bse3DI | GCAATG | 3 cut(s) | 329, 365, 611 |
| Bse8I | GATNNNNATC | 1 cut(s) | 551 |
| BseBI | CCWGG | 2 cut(s) | 645, 846 |
| BseDI | CCNNGG | 2 cut(s) | 477, 1362 |
| BseGI | GGATG | 5 cut(s) | 351, 919, 955, 1225, 1609 |
| BseJI | GATNNNNATC | 1 cut(s) | 551 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 106, 505, 650 |
| BseMI | GCAATG | 3 cut(s) | 329, 365, 611 |
| BseMII | CTCAG | 3 cut(s) | 177, 1497, 1566 |
| BseNI | ACTGG | 3 cut(s) | 521, 1456, 1474 |
| BseRI | GAGGAG | 1 cut(s) | 635 |
| BseXI | GCAGC | 1 cut(s) | 1103 |
| BseYI | CCCAGC | 1 cut(s) | 743 |
| BshFI | GGCC | 6 cut(s) | 99, 516, 655, 763, 1139, 1265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 690 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 106, 505, 650 |
| BsmAI | GTCTC | 2 cut(s) | 152, 1502 |
| BsnI | GGCC | 6 cut(s) | 99, 516, 655, 763, 1139, 1265 |
| Bsp1286I | GDGCHC | 1 cut(s) | 690 |
| Bsp143I | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1575 |
| BspACI | CCGC | 4 cut(s) | 46, 373, 793, 1623 |
| BspANI | GGCC | 6 cut(s) | 99, 516, 655, 763, 1139, 1265 |
| BspCNI | CTCAG | 3 cut(s) | 178, 1498, 1567 |
| BspHI | TCATGA | 1 cut(s) | 1228 |
| BspLI | GGNNCC | 1 cut(s) | 303 |
| BspPI | GGATC | 4 cut(s) | 255, 1290, 1580, 1744 |
| BspQI | GCTCTTC | 1 cut(s) | 1075 |
| BsrDI | GCAATG | 3 cut(s) | 329, 365, 611 |
| BsrI | ACTGG | 3 cut(s) | 521, 1456, 1474 |
| BssECI | CCNNGG | 2 cut(s) | 477, 1362 |
| BssMI | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| BssT1I | CCWWGG | 2 cut(s) | 477, 1362 |
| Bst2UI | CCWGG | 2 cut(s) | 645, 846 |
| Bst4CI | ACNGT | 2 cut(s) | 168, 801 |
| Bst6I | CTCTTC | 4 cut(s) | 99, 711, 1075, 1521 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 211, 1537 |
| BstC8I | GCNNGC | 7 cut(s) | 129, 356, 377, 690, 867, 1621, 1714 |
| BstDEI | CTNAG | 3 cut(s) | 186, 1506, 1575 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 104 |
| BstF5I | GGATG | 5 cut(s) | 351, 919, 955, 1225, 1609 |
| BstHHI | GCGC | 1 cut(s) | 81 |
| BstKTI | GATC | 5 cut(s) | 250, 1285, 1525, 1588, 1739 |
| BstMAI | GTCTC | 2 cut(s) | 152, 1502 |
| BstMBI | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 59, 211, 355, 694, 1046, 1091, 1537 |
| BstNI | CCWGG | 2 cut(s) | 645, 846 |
| BstNSI | RCATGY | 1 cut(s) | 1394 |
| BstSCI | CCNGG | 2 cut(s) | 643, 844 |
| BstV1I | GCAGC | 1 cut(s) | 1103 |
| BstX2I | RGATCY | 1 cut(s) | 1736 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 318, 1369 |
| BstYI | RGATCY | 1 cut(s) | 1736 |
| BsuI | GTATCC | 2 cut(s) | 759, 1676 |
| BsuRI | GGCC | 6 cut(s) | 99, 516, 655, 763, 1139, 1265 |
| BtsCI | GGATG | 5 cut(s) | 351, 919, 955, 1225, 1609 |
| BtsI | GCAGTG | 2 cut(s) | 386, 1266 |
| BtsIMutI | CAGTG | 4 cut(s) | 386, 528, 1266, 1347 |
| Cac8I | GCNNGC | 7 cut(s) | 129, 356, 377, 690, 867, 1621, 1714 |
| CciI | TCATGA | 1 cut(s) | 1228 |
| CfoI | GCGC | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 3 cut(s) | 301, 370, 653 |
| Csp6I | GTAC | 1 cut(s) | 32 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1336, 1371, 1551, 1586 |
| CviAII | CATG | 5 cut(s) | 1015, 1229, 1271, 1391, 1702 |
| CviQI | GTAC | 1 cut(s) | 32 |
| DdeI | CTNAG | 3 cut(s) | 186, 1506, 1575 |
| DpnI | GATC | 5 cut(s) | 249, 1284, 1524, 1587, 1738 |
| DpnII | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| DraI | TTTAAA | 1 cut(s) | 979 |
| EaeI | YGGCCR | 1 cut(s) | 1263 |
| Eam1104I | CTCTTC | 4 cut(s) | 99, 711, 1075, 1521 |
| EarI | CTCTTC | 4 cut(s) | 99, 711, 1075, 1521 |
| Ecl136II | GAGCTC | 1 cut(s) | 688 |
| Eco130I | CCWWGG | 2 cut(s) | 477, 1362 |
| Eco147I | AGGCCT | 2 cut(s) | 516, 763 |
| Eco24I | GRGCYC | 1 cut(s) | 690 |
| Eco32I | GATATC | 1 cut(s) | 902 |
| Eco47I | GGWCC | 2 cut(s) | 301, 370 |
| Eco53kI | GAGCTC | 1 cut(s) | 688 |
| Eco57I | CTGAAG | 3 cut(s) | 153, 482, 1547 |
| EcoICRI | GAGCTC | 1 cut(s) | 688 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 653 |
| EcoRII | CCWGG | 2 cut(s) | 643, 844 |
| EcoRV | GATATC | 1 cut(s) | 902 |
| EcoT14I | CCWWGG | 2 cut(s) | 477, 1362 |
| EcoT38I | GRGCYC | 1 cut(s) | 690 |
| ErhI | CCWWGG | 2 cut(s) | 477, 1362 |
| FaeI | CATG | 5 cut(s) | 1018, 1232, 1274, 1394, 1705 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 685, 717, 1520, 1552 |
| FatI | CATG | 5 cut(s) | 1014, 1228, 1270, 1390, 1701 |
| FblI | GTMKAC | 1 cut(s) | 1165 |
| Fnu4HI | GCNGC | 1 cut(s) | 1092 |
| FokI | GGATG | 5 cut(s) | 358, 926, 962, 1232, 1616 |
| FriOI | GRGCYC | 1 cut(s) | 690 |
| Fsp4HI | GCNGC | 1 cut(s) | 1092 |
| FspBI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| FspI | TGCGCA | 1 cut(s) | 80 |
| GlaI | GCGC | 1 cut(s) | 80 |
| GluI | GCNGC | 1 cut(s) | 1092 |
| GsaI | CCCAGC | 1 cut(s) | 747 |
| GsuI | CTGGAG | 2 cut(s) | 180, 1107 |
| HaeIII | GGCC | 6 cut(s) | 99, 516, 655, 763, 1139, 1265 |
| HapII | CCGG | 1 cut(s) | 96 |
| HhaI | GCGC | 1 cut(s) | 81 |
| Hin1II | CATG | 5 cut(s) | 1018, 1232, 1274, 1394, 1705 |
| Hin6I | GCGC | 1 cut(s) | 79 |
| HinP1I | GCGC | 1 cut(s) | 79 |
| HindIII | AAGCTT | 1 cut(s) | 125 |
| HinfI | GANTC | 7 cut(s) | 70, 288, 457, 883, 1108, 1498, 1558 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 2 cut(s) | 413, 659 |
| Hpy166II | GTNNAC | 3 cut(s) | 1150, 1166, 1435 |
| Hpy188I | TCNGA | 7 cut(s) | 247, 341, 462, 906, 1032, 1527, 1695 |
| Hpy8I | GTNNAC | 3 cut(s) | 1150, 1166, 1435 |
| HpyAV | CCTTC | 9 cut(s) | 336, 527, 644, 843, 850, 1163, 1273, 1324, 1716 |
| HpyCH4III | ACNGT | 2 cut(s) | 168, 801 |
| HpyCH4V | TGCA | 9 cut(s) | 214, 334, 511, 616, 869, 897, 1540, 1607, 1619 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 59, 211, 355, 694, 1046, 1091, 1537 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 1506, 1575 |
| Hsp92II | CATG | 5 cut(s) | 1018, 1232, 1274, 1394, 1705 |
| HspAI | GCGC | 1 cut(s) | 79 |
| Kzo9I | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| LguI | GCTCTTC | 1 cut(s) | 1075 |
| LmnI | GCTCC | 3 cut(s) | 187, 685, 1088 |
| Lsp1109I | GCAGC | 1 cut(s) | 1103 |
| LweI | GCATC | 7 cut(s) | 170, 336, 621, 1540, 1594, 1606, 1699 |
| MaeI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| MaeIII | GTNAC | 2 cut(s) | 795, 1745 |
| MalI | GATC | 5 cut(s) | 249, 1284, 1524, 1587, 1738 |
| MboI | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| MfeI | CAATTG | 2 cut(s) | 636, 1707 |
| MflI | RGATCY | 1 cut(s) | 1736 |
| MhlI | GDGCHC | 1 cut(s) | 690 |
| MlsI | TGGCCA | 1 cut(s) | 1265 |
| MluNI | TGGCCA | 1 cut(s) | 1265 |
| MmeI | TCCRAC | 2 cut(s) | 299, 783 |
| Mox20I | TGGCCA | 1 cut(s) | 1265 |
| MroXI | GAANNNNTTC | 5 cut(s) | 91, 408, 456, 720, 1236 |
| MscI | TGGCCA | 1 cut(s) | 1265 |
| MseI | TTAA | 7 cut(s) | 156, 423, 599, 978, 1244, 1581, 1629 |
| Msp20I | TGGCCA | 1 cut(s) | 1265 |
| MspI | CCGG | 1 cut(s) | 96 |
| MspR9I | CCNGG | 2 cut(s) | 645, 846 |
| MunI | CAATTG | 2 cut(s) | 636, 1707 |
| MvaI | CCWGG | 2 cut(s) | 645, 846 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 59, 211, 355, 694, 1046, 1091, 1537 |
| NdeII | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| NlaIII | CATG | 5 cut(s) | 1018, 1232, 1274, 1394, 1705 |
| NlaIV | GGNNCC | 1 cut(s) | 303 |
| NmeAIII | GCCGAG | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 795 |
| NsbI | TGCGCA | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 1394 |
| PagI | TCATGA | 1 cut(s) | 1228 |
| PceI | AGGCCT | 2 cut(s) | 516, 763 |
| PciI | ACATGT | 1 cut(s) | 1390 |
| PciSI | GCTCTTC | 1 cut(s) | 1075 |
| PdmI | GAANNNNTTC | 5 cut(s) | 91, 408, 456, 720, 1236 |
| PfeI | GAWTC | 7 cut(s) | 70, 288, 457, 883, 1108, 1498, 1558 |
| PfoI | TCCNGGA | 1 cut(s) | 844 |
| PkrI | GCNGC | 1 cut(s) | 1093 |
| PscI | ACATGT | 1 cut(s) | 1390 |
| PsiI | TTATAA | 1 cut(s) | 1490 |
| Psp124BI | GAGCTC | 1 cut(s) | 690 |
| Psp6I | CCWGG | 2 cut(s) | 643, 844 |
| PspFI | CCCAGC | 1 cut(s) | 743 |
| PspGI | CCWGG | 2 cut(s) | 643, 844 |
| PspN4I | GGNNCC | 1 cut(s) | 303 |
| PspPI | GGNCC | 3 cut(s) | 301, 370, 653 |
| PsuI | RGATCY | 1 cut(s) | 1736 |
| RsaI | GTAC | 1 cut(s) | 33 |
| RsaNI | GTAC | 1 cut(s) | 32 |
| SacI | GAGCTC | 1 cut(s) | 690 |
| SapI | GCTCTTC | 1 cut(s) | 1075 |
| SaqAI | TTAA | 7 cut(s) | 156, 423, 599, 978, 1244, 1581, 1629 |
| SatI | GCNGC | 1 cut(s) | 1092 |
| Sau3AI | GATC | 5 cut(s) | 247, 1282, 1522, 1585, 1736 |
| Sau96I | GGNCC | 3 cut(s) | 301, 370, 653 |
| ScrFI | CCNGG | 2 cut(s) | 645, 846 |
| SduI | GDGCHC | 1 cut(s) | 690 |
| SfaNI | GCATC | 7 cut(s) | 170, 336, 621, 1540, 1594, 1606, 1699 |
| SinI | GGWCC | 2 cut(s) | 301, 370 |
| SseBI | AGGCCT | 2 cut(s) | 516, 763 |
| SsiI | CCGC | 4 cut(s) | 46, 373, 793, 1623 |
| SspI | AATATT | 1 cut(s) | 1194 |
| SspMI | CTAG | 3 cut(s) | 144, 1685, 1719 |
| SstI | GAGCTC | 1 cut(s) | 690 |
| StuI | AGGCCT | 2 cut(s) | 516, 763 |
| StyD4I | CCNGG | 2 cut(s) | 643, 844 |
| StyI | CCWWGG | 2 cut(s) | 477, 1362 |
| TaaI | ACNGT | 2 cut(s) | 168, 801 |
| TfiI | GAWTC | 7 cut(s) | 70, 288, 457, 883, 1108, 1498, 1558 |
| Tru1I | TTAA | 7 cut(s) | 156, 423, 599, 978, 1244, 1581, 1629 |
| Tru9I | TTAA | 7 cut(s) | 156, 423, 599, 978, 1244, 1581, 1629 |
| TscAI | CASTG | 4 cut(s) | 386, 528, 1266, 1354 |
| TseFI | GTSAC | 1 cut(s) | 795 |
| TseI | GCWGC | 1 cut(s) | 1091 |
| Tsp45I | GTSAC | 1 cut(s) | 795 |
| TspDTI | ATGAA | 6 cut(s) | 720, 815, 896, 1217, 1245, 1259 |
| TspGWI | ACGGA | 2 cut(s) | 314, 1658 |
| TspRI | CASTG | 4 cut(s) | 386, 528, 1266, 1354 |
| VpaK11BI | GGWCC | 2 cut(s) | 301, 370 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 104 |
| XapI | RAATTY | 2 cut(s) | 427, 1026 |
| XbaI | TCTAGA | 1 cut(s) | 1718 |
| XceI | RCATGY | 1 cut(s) | 1394 |
| XmiI | GTMKAC | 1 cut(s) | 1165 |
| XmnI | GAANNNNTTC | 5 cut(s) | 91, 408, 456, 720, 1236 |
| XspI | CTAG | 3 cut(s) | 144, 1685, 1719 |