DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33370 AT5G51280 |
| fragaria_vesca | FvH4_3g15960 FvH4_6g29290 |
| malus_domestica | MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1 |
| prunus_persica | Prupe.3G092400_v2.0.a1 |
| pyrus_communis | pycom17g22090 pycom808g00170 |
| rosa_chinensis | RchiOBHm_Chr2g0134471 |
| rosa_laevigata | RLG00000019394 |
| rosa_multiflora | Rmu_co8377539.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00110190 |
| rosa_rugosa | Rorug02G0317300 |
| rosa_samantha | Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000 |
| rosa_wichuraiana | Rw2G030130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1436 |
| AccI | GTMKAC | 1 cut(s) | 1111 |
| AccIII | TCCGGA | 1 cut(s) | 41 |
| AciI | CCGC | 5 cut(s) | 289, 345, 966, 1569, 1596 |
| AclWI | GGATC | 4 cut(s) | 1236, 1526, 1677, 1690 |
| AcoI | YGGCCR | 1 cut(s) | 1209 |
| AcsI | RAATTY | 2 cut(s) | 373, 972 |
| AcuI | CTGAAG | 2 cut(s) | 99, 428 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 451, 628, 1489, 1665 |
| AflIII | ACRYGT | 1 cut(s) | 1336 |
| AjnI | CCWGG | 1 cut(s) | 790 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 588, 620, 1268, 1300 |
| AluBI | AGCT | 7 cut(s) | 73, 634, 929, 1031, 1157, 1525, 1662 |
| AluI | AGCT | 7 cut(s) | 73, 634, 929, 1031, 1157, 1525, 1662 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| AlwI | GGATC | 4 cut(s) | 1236, 1526, 1677, 1690 |
| Aor13HI | TCCGGA | 1 cut(s) | 41 |
| AoxI | GGCC | 4 cut(s) | 599, 707, 1083, 1209 |
| ApeKI | GCWGC | 1 cut(s) | 1037 |
| ApoI | RAATTY | 2 cut(s) | 373, 972 |
| AseI | ATTAAT | 2 cut(s) | 585, 1344 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 402, 666 |
| AspS9I | GGNCC | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 481, 605 |
| AsuII | TTCGAA | 1 cut(s) | 319 |
| BalI | TGGCCA | 1 cut(s) | 1211 |
| BamHI | GGATCC | 1 cut(s) | 1682 |
| BbsI | GAAGAC | 1 cut(s) | 455 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BbvI | GCAGC | 1 cut(s) | 1049 |
| BciT130I | CCWGG | 1 cut(s) | 792 |
| BfaI | CTAG | 4 cut(s) | 90, 987, 1631, 1665 |
| BisI | GCNGC | 1 cut(s) | 1038 |
| BlpI | GCTNAGC | 1 cut(s) | 1521 |
| BlsI | GCNGC | 1 cut(s) | 1039 |
| Bme1390I | CCNGG | 1 cut(s) | 792 |
| BmgT120I | GGNCC | 1 cut(s) | 599 |
| BmiI | GGNNCC | 2 cut(s) | 249, 1684 |
| BmrFI | CCNGG | 1 cut(s) | 792 |
| BmsI | GCATC | 3 cut(s) | 116, 567, 1540 |
| BpiI | GAAGAC | 1 cut(s) | 455 |
| BpmI | CTGGAG | 1 cut(s) | 1053 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1521 |
| Bpu14I | TTCGAA | 1 cut(s) | 319 |
| BpuEI | CTTGAG | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 2 cut(s) | 423, 791 |
| BsaWI | WCCGGW | 3 cut(s) | 41, 466, 1685 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 927, 957, 1111, 1141 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 451, 628, 1489, 1665 |
| Bse1I | ACTGG | 2 cut(s) | 265, 1420 |
| Bse3DI | GCAATG | 2 cut(s) | 311, 557 |
| BseAI | TCCGGA | 1 cut(s) | 41 |
| BseBI | CCWGG | 1 cut(s) | 792 |
| BseDI | CCNNGG | 2 cut(s) | 423, 791 |
| BseGI | GGATG | 5 cut(s) | 38, 297, 901, 1171, 1555 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 451, 628, 1489, 1665 |
| BseMI | GCAATG | 2 cut(s) | 311, 557 |
| BseMII | CTCAG | 4 cut(s) | 23, 123, 138, 1512 |
| BseNI | ACTGG | 2 cut(s) | 265, 1420 |
| BseRI | GAGGAG | 2 cut(s) | 164, 581 |
| BseXI | GCAGC | 1 cut(s) | 1049 |
| BshFI | GGCC | 4 cut(s) | 601, 709, 1085, 1211 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiSI | CCGG | 3 cut(s) | 42, 467, 1686 |
| BslFI | GGGAC | 1 cut(s) | 500 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 451, 628, 1489, 1665 |
| BsmFI | GGGAC | 1 cut(s) | 500 |
| BsnI | GGCC | 4 cut(s) | 601, 709, 1085, 1211 |
| Bsp119I | TTCGAA | 1 cut(s) | 319 |
| Bsp1286I | GDGCHC | 1 cut(s) | 186 |
| Bsp13I | TCCGGA | 1 cut(s) | 41 |
| Bsp143I | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1521 |
| BspACI | CCGC | 5 cut(s) | 289, 345, 966, 1569, 1596 |
| BspANI | GGCC | 4 cut(s) | 601, 709, 1085, 1211 |
| BspCNI | CTCAG | 4 cut(s) | 22, 124, 139, 1513 |
| BspEI | TCCGGA | 1 cut(s) | 41 |
| BspHI | TCATGA | 1 cut(s) | 1174 |
| BspLI | GGNNCC | 2 cut(s) | 249, 1684 |
| BspPI | GGATC | 4 cut(s) | 1236, 1526, 1677, 1690 |
| BspQI | GCTCTTC | 1 cut(s) | 1021 |
| BspT104I | TTCGAA | 1 cut(s) | 319 |
| BsrDI | GCAATG | 2 cut(s) | 311, 557 |
| BsrI | ACTGG | 2 cut(s) | 265, 1420 |
| BssECI | CCNNGG | 2 cut(s) | 423, 791 |
| BssMI | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| BssT1I | CCWWGG | 1 cut(s) | 423 |
| Bst2UI | CCWGG | 1 cut(s) | 792 |
| Bst4CI | ACNGT | 2 cut(s) | 114, 1015 |
| Bst6I | CTCTTC | 4 cut(s) | 48, 657, 1021, 1230 |
| BstBI | TTCGAA | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 7 cut(s) | 75, 302, 636, 813, 966, 1567, 1660 |
| BstDEI | CTNAG | 4 cut(s) | 9, 132, 147, 1521 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| BstF5I | GGATG | 5 cut(s) | 38, 297, 901, 1171, 1555 |
| BstKTI | GATC | 6 cut(s) | 180, 196, 1092, 1231, 1534, 1685 |
| BstMBI | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 640, 992, 1037 |
| BstNI | CCWGG | 1 cut(s) | 792 |
| BstNSI | RCATGY | 2 cut(s) | 1340, 1357 |
| BstSCI | CCNGG | 1 cut(s) | 790 |
| BstV1I | GCAGC | 1 cut(s) | 1049 |
| BstV2I | GAAGAC | 1 cut(s) | 455 |
| BstX2I | RGATCY | 1 cut(s) | 1682 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1388 |
| BstYI | RGATCY | 1 cut(s) | 1682 |
| BsuRI | GGCC | 4 cut(s) | 601, 709, 1085, 1211 |
| BtsCI | GGATG | 5 cut(s) | 38, 297, 901, 1171, 1555 |
| BtsI | GCAGTG | 2 cut(s) | 332, 1212 |
| BtsIMutI | CAGTG | 3 cut(s) | 332, 1212, 1293 |
| Cac8I | GCNNGC | 7 cut(s) | 75, 302, 636, 813, 966, 1567, 1660 |
| CciI | TCATGA | 1 cut(s) | 1174 |
| Cfr13I | GGNCC | 1 cut(s) | 599 |
| CseI | GACGC | 1 cut(s) | 134 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1497, 1532 |
| CviAII | CATG | 8 cut(s) | 208, 490, 961, 1175, 1217, 1337, 1354, 1648 |
| DdeI | CTNAG | 4 cut(s) | 9, 132, 147, 1521 |
| DpnI | GATC | 6 cut(s) | 179, 195, 1091, 1230, 1533, 1684 |
| DpnII | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| DraI | TTTAAA | 1 cut(s) | 925 |
| EaeI | YGGCCR | 1 cut(s) | 1209 |
| Eam1104I | CTCTTC | 4 cut(s) | 48, 657, 1021, 1230 |
| EarI | CTCTTC | 4 cut(s) | 48, 657, 1021, 1230 |
| EciI | GGCGGA | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 423 |
| Eco147I | AGGCCT | 1 cut(s) | 709 |
| Eco32I | GATATC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 2 cut(s) | 99, 428 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| EcoO109I | RGGNCCY | 1 cut(s) | 599 |
| EcoRII | CCWGG | 1 cut(s) | 790 |
| EcoRV | GATATC | 1 cut(s) | 695 |
| EcoT14I | CCWWGG | 1 cut(s) | 423 |
| ErhI | CCWWGG | 1 cut(s) | 423 |
| FaeI | CATG | 8 cut(s) | 211, 493, 964, 1178, 1220, 1340, 1357, 1651 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 631, 663 |
| FaqI | GGGAC | 1 cut(s) | 500 |
| FatI | CATG | 8 cut(s) | 207, 489, 960, 1174, 1216, 1336, 1353, 1647 |
| FauI | CCCGC | 2 cut(s) | 973, 1562 |
| FblI | GTMKAC | 1 cut(s) | 1111 |
| Fnu4HI | GCNGC | 1 cut(s) | 1038 |
| FokI | GGATG | 5 cut(s) | 25, 304, 908, 1178, 1562 |
| Fsp4HI | GCNGC | 1 cut(s) | 1038 |
| FspBI | CTAG | 4 cut(s) | 90, 987, 1631, 1665 |
| GluI | GCNGC | 1 cut(s) | 1038 |
| GsuI | CTGGAG | 1 cut(s) | 1053 |
| HaeIII | GGCC | 4 cut(s) | 601, 709, 1085, 1211 |
| HapII | CCGG | 3 cut(s) | 42, 467, 1686 |
| HgaI | GACGC | 1 cut(s) | 134 |
| Hin1II | CATG | 8 cut(s) | 211, 493, 964, 1178, 1220, 1340, 1357, 1651 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HinfI | GANTC | 5 cut(s) | 16, 234, 1054, 1444, 1504 |
| HpaII | CCGG | 3 cut(s) | 42, 467, 1686 |
| HphI | GGTGA | 3 cut(s) | 359, 481, 605 |
| Hpy166II | GTNNAC | 3 cut(s) | 1096, 1112, 1381 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 193, 408, 978 |
| Hpy8I | GTNNAC | 3 cut(s) | 1096, 1112, 1381 |
| HpyAV | CCTTC | 6 cut(s) | 104, 163, 590, 796, 1109, 1219 |
| HpyCH4III | ACNGT | 2 cut(s) | 114, 1015 |
| HpyCH4IV | ACGT | 1 cut(s) | 1377 |
| HpyCH4V | TGCA | 9 cut(s) | 160, 457, 503, 562, 638, 843, 1486, 1553, 1565 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 640, 992, 1037 |
| HpyF3I | CTNAG | 4 cut(s) | 9, 132, 147, 1521 |
| HpySE526I | ACGT | 1 cut(s) | 1377 |
| Hsp92II | CATG | 8 cut(s) | 211, 493, 964, 1178, 1220, 1340, 1357, 1651 |
| Kpn2I | TCCGGA | 1 cut(s) | 41 |
| Kzo9I | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| LguI | GCTCTTC | 1 cut(s) | 1021 |
| LmnI | GCTCC | 4 cut(s) | 133, 247, 631, 1034 |
| Lsp1109I | GCAGC | 1 cut(s) | 1049 |
| LweI | GCATC | 3 cut(s) | 116, 567, 1540 |
| MaeI | CTAG | 4 cut(s) | 90, 987, 1631, 1665 |
| MaeII | ACGT | 1 cut(s) | 1377 |
| MaeIII | GTNAC | 3 cut(s) | 122, 1009, 1691 |
| MalI | GATC | 6 cut(s) | 179, 195, 1091, 1230, 1533, 1684 |
| MboI | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| MfeI | CAATTG | 1 cut(s) | 1653 |
| MflI | RGATCY | 1 cut(s) | 1682 |
| MhlI | GDGCHC | 1 cut(s) | 186 |
| MlsI | TGGCCA | 1 cut(s) | 1211 |
| MluNI | TGGCCA | 1 cut(s) | 1211 |
| MmeI | TCCRAC | 4 cut(s) | 39, 167, 245, 729 |
| Mox20I | TGGCCA | 1 cut(s) | 1211 |
| MroI | TCCGGA | 1 cut(s) | 41 |
| MroXI | GAANNNNTTC | 2 cut(s) | 402, 666 |
| MscI | TGGCCA | 1 cut(s) | 1211 |
| MslI | CAYNNNNRTG | 1 cut(s) | 452 |
| Msp20I | TGGCCA | 1 cut(s) | 1211 |
| MspI | CCGG | 3 cut(s) | 42, 467, 1686 |
| MspR9I | CCNGG | 1 cut(s) | 792 |
| MunI | CAATTG | 1 cut(s) | 1653 |
| MvaI | CCWGG | 1 cut(s) | 792 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 640, 992, 1037 |
| NdeII | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| NlaIII | CATG | 8 cut(s) | 211, 493, 964, 1178, 1220, 1340, 1357, 1651 |
| NlaIV | GGNNCC | 2 cut(s) | 249, 1684 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| NspI | RCATGY | 2 cut(s) | 1340, 1357 |
| NspV | TTCGAA | 1 cut(s) | 319 |
| PagI | TCATGA | 1 cut(s) | 1174 |
| PceI | AGGCCT | 1 cut(s) | 709 |
| PciI | ACATGT | 1 cut(s) | 1336 |
| PciSI | GCTCTTC | 1 cut(s) | 1021 |
| PdmI | GAANNNNTTC | 2 cut(s) | 402, 666 |
| PfeI | GAWTC | 5 cut(s) | 16, 234, 1054, 1444, 1504 |
| PkrI | GCNGC | 1 cut(s) | 1039 |
| PscI | ACATGT | 1 cut(s) | 1336 |
| PshBI | ATTAAT | 2 cut(s) | 585, 1344 |
| PsiI | TTATAA | 1 cut(s) | 1436 |
| Psp6I | CCWGG | 1 cut(s) | 790 |
| PspGI | CCWGG | 1 cut(s) | 790 |
| PspN4I | GGNNCC | 2 cut(s) | 249, 1684 |
| PspPI | GGNCC | 1 cut(s) | 599 |
| PsuI | RGATCY | 1 cut(s) | 1682 |
| RseI | CAYNNNNRTG | 1 cut(s) | 452 |
| SapI | GCTCTTC | 1 cut(s) | 1021 |
| SatI | GCNGC | 1 cut(s) | 1038 |
| Sau3AI | GATC | 6 cut(s) | 177, 193, 1089, 1228, 1531, 1682 |
| Sau96I | GGNCC | 1 cut(s) | 599 |
| ScrFI | CCNGG | 1 cut(s) | 792 |
| SduI | GDGCHC | 1 cut(s) | 186 |
| SfaNI | GCATC | 3 cut(s) | 116, 567, 1540 |
| SfuI | TTCGAA | 1 cut(s) | 319 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 452 |
| SmlI | CTYRAG | 1 cut(s) | 47 |
| SmoI | CTYRAG | 1 cut(s) | 47 |
| SseBI | AGGCCT | 1 cut(s) | 709 |
| SsiI | CCGC | 5 cut(s) | 289, 345, 966, 1569, 1596 |
| SspI | AATATT | 1 cut(s) | 1140 |
| SspMI | CTAG | 4 cut(s) | 90, 987, 1631, 1665 |
| StuI | AGGCCT | 1 cut(s) | 709 |
| StyD4I | CCNGG | 1 cut(s) | 790 |
| StyI | CCWWGG | 1 cut(s) | 423 |
| TaaI | ACNGT | 2 cut(s) | 114, 1015 |
| TaiI | ACGT | 1 cut(s) | 1380 |
| TaqI | TCGA | 4 cut(s) | 180, 296, 319, 834 |
| TfiI | GAWTC | 5 cut(s) | 16, 234, 1054, 1444, 1504 |
| TscAI | CASTG | 3 cut(s) | 332, 1212, 1300 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| TseI | GCWGC | 1 cut(s) | 1037 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 3 cut(s) | 666, 842, 1163 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 3 cut(s) | 332, 1212, 1300 |
| VspI | ATTAAT | 2 cut(s) | 585, 1344 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1487 |
| XapI | RAATTY | 2 cut(s) | 373, 972 |
| XceI | RCATGY | 2 cut(s) | 1340, 1357 |
| XmiI | GTMKAC | 1 cut(s) | 1111 |
| XmnI | GAANNNNTTC | 2 cut(s) | 402, 666 |
| XspI | CTAG | 4 cut(s) | 90, 987, 1631, 1665 |