Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010967

Physical Location & Seq

Genomic Coordinates Reverse (-)

38702177 .. 38715072

Gene Structure 12896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGGTGCCCCGCTGCTTTCACCAAAGGTTTCAACCTTCAGCATGTCTCTGATGGTCTCTATGGGAGGCATCTTCATGTCTACAGTTGGCCTGAGGGCTTTTAGAAAAACATTTGCAGGATTTCTATGGAAATATAGTGCAGAGCTCAATTCAAGTTTTTATGACAGTCATCAAATGTACTGCCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGAACTACAGGTGATGTAACAGCTCAAAATTTTAACTCTGATGCTGTTACTAGATTTACTGCCCTTGATCTGTCAACCCTTGATCTGCCCTTGATCTTCCATCTATTCCTCTTTGACATATACCTGCACCCTTTTATGTTAATTCCTTTCTCTATTCATTTTCAGAAAGCACAGTCGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGAGTCAGAGAGGAAGGAGATCTACGTCTTGGATAGCTCTGCCGTGTACCAATTACGAAACACCCAATCTACTATCTTCGGGAAGCCTCAATCAGCCATGTATCGGAAGTGTGCAGAAGAGAAGAGGTTCGTCTGGATTTCGTAATAGCGGTCTTCTGCGACAGAGTGAGGCCGATCCGAGAGAGAGAGAGGAAGAGCAGGAGACGGGAAGAGTTTGGTTTGCCATGATTGGTGAACGGTTTGTGGGTTTTGAAGTACGATTCGAGTTGTCTGATTCGAAATTGAAAAACCCAATCAAAAATTCAATTGTTGAATTGATTATGATGCAGCTCAATTCAAGTTTTTATGACAGTCATCAAATGTACTACCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGATTACAGGAGTCTGGGTTTTGGGTCTCTTGCCTTTGTTTTTGTTCTGATCGAGTTTCCAACCTTGGAATTGATTGTAGGCTATGTAGAAATCTGATGAGTAATCAGCAAAAGAAGAAGCGGTTTCATTTTCAGCAAAAGCAAAATAAGAAAAGCGACATAATGTTTCACATTTTAACCTTCTACTTAAATGCATTTTTCGCGGACCACAATAAAGTTCCTTGGTTTGCTGAGTTCTCCTTTGGTTTGATCAAAGGCTGTGGTTTTGGTGGATTTCGACAGAGTGAGGATTGCAGTAGTTGGAATTCATGGATATATGGGTTTTTTGGTTTAGGGGTTGTGATTGTGTTTCGGATTGGGATTTCGGAATTGATTGAAAAGGCTTTGTTTGTGCTACAGTTTCAACTCTGGGCAATTGATTGCAATACCTTCAAGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTACCGGTACTGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C zf-CCHC

Protein Analysis

494

Amino Acids

56.74

Weight (kDa)

9.56

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33370 AT5G51280
fragaria_vesca	FvH4_3g15960 FvH4_6g29290
malus_domestica	MD09G1222100.v1.1 MD17G1213800.v1.1 MD17G1216300.v1.1
prunus_persica	Prupe.3G092400_v2.0.a1
pyrus_communis	pycom17g22090 pycom808g00170
rosa_chinensis	RchiOBHm_Chr2g0134471
rosa_laevigata	RLG00000019394
rosa_multiflora	Rmu_co8377539.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110190
rosa_rugosa	Rorug02G0317300
rosa_samantha	Rh2AG375700 Rh2BG375700 Rh2CG353900 Rh2DG393000
rosa_wichuraiana	Rw2G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	3 cut(s)	223, 895, 1157
AciI	CCGC	6 cut(s)	11, 223, 636, 895, 1075, 1157
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	5 cut(s)	207, 310, 787, 879, 1258
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	5 cut(s)	179, 535, 744, 851, 1435
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgeI	ACCGGT	1 cut(s)	1430
AhlI	ACTAGT	1 cut(s)	1417
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	8 cut(s)	145, 215, 305, 524, 817, 887, 1397, 1405
AluI	AGCT	8 cut(s)	145, 215, 305, 524, 817, 887, 1397, 1405
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	5 cut(s)	51, 61, 683, 985, 1473
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	2 cut(s)	88, 657
ApeKI	GCWGC	3 cut(s)	13, 814, 1397
ApoI	RAATTY	5 cut(s)	207, 310, 787, 879, 1258
AsiGI	ACCGGT	1 cut(s)	1430
Asp700I	GAANNNNTTC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	1159
AsuHPI	GGTGA	3 cut(s)	12, 305, 731
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	1159
AxyI	CCTNAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	147
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	826, 1384
BccI	CCATC	6 cut(s)	46, 197, 250, 390, 869, 922
BceAI	ACGGC	1 cut(s)	514
BclI	TGATCA	1 cut(s)	1203
BcoDI	GTCTC	5 cut(s)	51, 61, 683, 985, 1473
BcuI	ACTAGT	1 cut(s)	1417
BfaI	CTAG	2 cut(s)	333, 1418
BfmI	CTRYAG	3 cut(s)	81, 288, 1349
BfuAI	ACCTGC	1 cut(s)	414
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	3 cut(s)	14, 815, 1398
BlpI	GCTNAGC	1 cut(s)	1401
BlsI	GCNGC	3 cut(s)	15, 816, 1399
Bme18I	GGWCC	1 cut(s)	1159
BmgT120I	GGNCC	1 cut(s)	1159
BmiI	GGNNCC	3 cut(s)	7, 227, 899
BmsI	GCATC	3 cut(s)	78, 313, 801
BpiI	GAAGAC	1 cut(s)	632
Bpu10I	CCTNAGC	1 cut(s)	1455
Bpu1102I	GCTNAGC	1 cut(s)	1401
Bpu14I	TTCGAA	1 cut(s)	764
BsaBI	GATNNNNATC	2 cut(s)	237, 909
BsaI	GGTCTC	2 cut(s)	61, 985
BsaJI	CCNNGG	2 cut(s)	1018, 1175
BsaWI	WCCGGW	1 cut(s)	1430
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	1430
Bse1I	ACTGG	2 cut(s)	283, 955
Bse21I	CCTNAGG	1 cut(s)	92
Bse8I	GATNNNNATC	2 cut(s)	237, 909
BseDI	CCNNGG	2 cut(s)	1018, 1175
BseGI	GGATG	2 cut(s)	238, 910
BseJI	GATNNNNATC	2 cut(s)	237, 909
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	6 cut(s)	83, 213, 885, 1176, 1392, 1469
BseNI	ACTGG	2 cut(s)	283, 955
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	826, 1384
BseYI	CCCAGC	2 cut(s)	184, 856
BsgI	GTGCAG	3 cut(s)	159, 392, 620
Bsh1236I	CGCG	3 cut(s)	223, 895, 1157
Bsh1285I	CGRYCG	2 cut(s)	235, 907
BshFI	GGCC	2 cut(s)	90, 659
BshNI	GGYRCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	1430
BsiEI	CGRYCG	2 cut(s)	235, 907
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	1431
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	5 cut(s)	51, 61, 683, 985, 1473
BsmBI	CGTCTC	2 cut(s)	683, 1473
BsnI	GGCC	2 cut(s)	90, 659
Bso31I	GGTCTC	2 cut(s)	61, 985
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	10, 147
Bsp143I	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
Bsp1720I	GCTNAGC	1 cut(s)	1401
BspACI	CCGC	6 cut(s)	11, 223, 636, 895, 1075, 1157
BspANI	GGCC	2 cut(s)	90, 659
BspCNI	CTCAG	6 cut(s)	84, 212, 884, 1177, 1393, 1468
BspFNI	CGCG	3 cut(s)	223, 895, 1157
BspLI	GGNNCC	3 cut(s)	7, 227, 899
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	1 cut(s)	675
BspT104I	TTCGAA	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	2 cut(s)	61, 985
BsrFI	RCCGGY	1 cut(s)	1430
BsrI	ACTGG	2 cut(s)	283, 955
BssAI	RCCGGY	1 cut(s)	1430
BssECI	CCNNGG	2 cut(s)	1018, 1175
BssMI	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
BssT1I	CCWWGG	2 cut(s)	1018, 1175
Bst4CI	ACNGT	6 cut(s)	85, 167, 456, 726, 839, 1353
Bst6I	CTCTTC	4 cut(s)	599, 604, 675, 691
BstBI	TTCGAA	1 cut(s)	764
BstDEI	CTNAG	6 cut(s)	92, 199, 871, 1185, 1401, 1455
BstF5I	GGATG	2 cut(s)	238, 910
BstFNI	CGCG	3 cut(s)	223, 895, 1157
BstKTI	GATC	9 cut(s)	235, 352, 367, 378, 509, 664, 907, 1006, 1206
BstMAI	GTCTC	5 cut(s)	51, 61, 683, 985, 1473
BstMBI	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
BstMCI	CGRYCG	2 cut(s)	235, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	1154
BstNSI	RCATGY	1 cut(s)	46
BstSFI	CTRYAG	3 cut(s)	81, 288, 1349
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	3 cut(s)	223, 895, 1157
BstV1I	GCAGC	2 cut(s)	826, 1384
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	90, 659
BtsCI	GGATG	2 cut(s)	238, 910
BveI	ACCTGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	1430
Cfr13I	GGNCC	1 cut(s)	1159
Csp6I	GTAC	5 cut(s)	178, 534, 743, 850, 1434
CspAI	ACCGGT	1 cut(s)	1430
CspCI	CAANNNNNGTGG	2 cut(s)	1195, 1230
CviAII	CATG	5 cut(s)	43, 76, 585, 712, 1263
CviQI	GTAC	5 cut(s)	178, 534, 743, 850, 1434
DdeI	CTNAG	6 cut(s)	92, 199, 871, 1185, 1401, 1455
DpnI	GATC	9 cut(s)	234, 351, 366, 377, 508, 663, 906, 1005, 1205
DpnII	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
Eam1104I	CTCTTC	4 cut(s)	599, 604, 675, 691
EarI	CTCTTC	4 cut(s)	599, 604, 675, 691
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	1018, 1175
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	2 cut(s)	61, 985
Eco47I	GGWCC	1 cut(s)	1159
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	1258
EcoT14I	CCWWGG	2 cut(s)	1018, 1175
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	1018, 1175
Esp3I	CGTCTC	2 cut(s)	683, 1473
FaeI	CATG	5 cut(s)	46, 79, 588, 715, 1266
FatI	CATG	5 cut(s)	42, 75, 584, 711, 1262
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	1203
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	14, 815, 1398
FokI	GGATG	2 cut(s)	225, 897
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	14, 815, 1398
FspBI	CTAG	2 cut(s)	333, 1418
GluI	GCNGC	3 cut(s)	14, 815, 1398
GsaI	CCCAGC	2 cut(s)	188, 860
HaeIII	GGCC	2 cut(s)	90, 659
HapII	CCGG	1 cut(s)	1431
Hin1II	CATG	5 cut(s)	46, 79, 588, 715, 1266
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	4 cut(s)	490, 747, 761, 965
HpaII	CCGG	1 cut(s)	1431
HphI	GGTGA	3 cut(s)	12, 305, 731
Hpy166II	GTNNAC	4 cut(s)	81, 357, 534, 722
Hpy188III	TCNNGA	3 cut(s)	567, 621, 1470
Hpy8I	GTNNAC	4 cut(s)	81, 357, 534, 722
HpyAV	CCTTC	4 cut(s)	46, 495, 1144, 1393
HpyCH4III	ACNGT	6 cut(s)	85, 167, 456, 726, 839, 1353
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	8 cut(s)	116, 140, 409, 601, 814, 1148, 1248, 1377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1154
HpyF3I	CTNAG	6 cut(s)	92, 199, 871, 1185, 1401, 1455
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	46, 79, 588, 715, 1266
Ksp22I	TGATCA	1 cut(s)	1203
Kzo9I	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	225, 897
Lsp1109I	GCAGC	2 cut(s)	826, 1384
LweI	GCATC	3 cut(s)	78, 313, 801
MaeI	CTAG	2 cut(s)	333, 1418
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	2 cut(s)	298, 328
MalI	GATC	9 cut(s)	234, 351, 366, 377, 508, 663, 906, 1005, 1205
MboI	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
MfeI	CAATTG	2 cut(s)	792, 1368
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	10, 147
MlyI	GAGTC	2 cut(s)	499, 974
MmeI	TCCRAC	2 cut(s)	1038, 1235
Mph1103I	ATGCAT	1 cut(s)	1150
MroXI	GAANNNNTTC	1 cut(s)	613
MseI	TTAA	4 cut(s)	315, 422, 1130, 1142
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	1431
MunI	CAATTG	2 cut(s)	792, 1368
MvnI	CGCG	3 cut(s)	223, 895, 1157
MwoI	GCNNNNNNNGC	1 cut(s)	1154
NdeII	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
NlaIII	CATG	5 cut(s)	46, 79, 588, 715, 1266
NlaIV	GGNNCC	3 cut(s)	7, 227, 899
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	747, 761
PinAI	ACCGGT	1 cut(s)	1430
PkrI	GCNGC	3 cut(s)	15, 816, 1399
Ple19I	CGATCG	2 cut(s)	235, 907
PleI	GAGTC	2 cut(s)	498, 973
PpsI	GAGTC	2 cut(s)	498, 973
Psp124BI	GAGCTC	1 cut(s)	147
PspFI	CCCAGC	2 cut(s)	184, 856
PspN4I	GGNNCC	3 cut(s)	7, 227, 899
PspPI	GGNCC	1 cut(s)	1159
PsuI	RGATCY	1 cut(s)	506
PvuI	CGATCG	2 cut(s)	235, 907
RsaI	GTAC	5 cut(s)	179, 535, 744, 851, 1435
RsaNI	GTAC	5 cut(s)	178, 534, 743, 850, 1434
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	315, 422, 1130, 1142
SatI	GCNGC	3 cut(s)	14, 815, 1398
Sau3AI	GATC	9 cut(s)	232, 349, 364, 375, 506, 661, 904, 1003, 1203
Sau96I	GGNCC	1 cut(s)	1159
SchI	GAGTC	2 cut(s)	499, 974
SduI	GDGCHC	2 cut(s)	10, 147
SfaNI	GCATC	3 cut(s)	78, 313, 801
SfcI	CTRYAG	3 cut(s)	81, 288, 1349
SfuI	TTCGAA	1 cut(s)	764
SinI	GGWCC	1 cut(s)	1159
SmiMI	CAYNNNNRTG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	1417
SsiI	CCGC	6 cut(s)	11, 223, 636, 895, 1075, 1157
SspMI	CTAG	2 cut(s)	333, 1418
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	1018, 1175
TaaI	ACNGT	6 cut(s)	85, 167, 456, 726, 839, 1353
TaiI	ACGT	1 cut(s)	515
TatI	WGTACW	2 cut(s)	177, 849
TfiI	GAWTC	2 cut(s)	747, 761
Tru1I	TTAA	4 cut(s)	315, 422, 1130, 1142
Tru9I	TTAA	4 cut(s)	315, 422, 1130, 1142
TseI	GCWGC	3 cut(s)	13, 814, 1397
TspDTI	ATGAA	4 cut(s)	64, 428, 1070, 1251
VpaK11BI	GGWCC	1 cut(s)	1159
XapI	RAATTY	5 cut(s)	207, 310, 787, 879, 1258
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	2 cut(s)	333, 1418
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.