Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009046

Physical Location & Seq

Genomic Coordinates Reverse (-)

27259993 .. 27260385

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1224400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGTCACCTCAAACAAGGAAATTTGGGCTCAACCTCCCCACCAGGATGTCCGAGACACTGCTCCGCCTAGATTCCATATTGGTTTCTTTTCAAGCGGTTTCCAGTCTCTCAGCGTCGCCTGGTTCTTGTCAGGCGATTTCGAACCTGTCTTTGCCGTCCAAGTCCTCGACTTGCAGCGACAGATTCATCCCCTGTAAATCCTCTTCGTGGCTTCACTCATTCGGGCTCAACGAGAAGGCCTCACCGGTCAAAAAAGGCGGCAACGAGACGTATGCCAGATTATTGAAATCAGAGCTTTTCGGGTCTAATTTCGGGGTTTTTTTTTCTCCTGCAGGTGGTGGCAGCGGTGGTGCGGTGTCCCCAATGAGTCCCAGCAAAAACATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

WD40

Protein Analysis

131

Amino Acids

13.71

Weight (kDa)

9.6

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13840 AT5G13840
fragaria_vesca	FvH4_7g22780 FvH4_7g22780 FvH4_7g22780
malus_domestica	MD01G1136000.v1.1 MD07G1200700.v1.1 MD09G1224400.v1.1
prunus_persica	Prupe.2G237500_v2.0.a1 Prupe.2G237500_v2.0.a1
pyrus_communis	pycom01g15680 pycom07g18780
rosa_chinensis	RchiOBHm_Chr1g0367881
rosa_multiflora	Rmu_sc0035444.1_g000001 Rmu_sc0037823.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289160
rosa_rugosa	Rorug01G0337400
rosa_samantha	Rh1AG344300 Rh1BG306300 Rh1CG321900 Rh1DG338500
rosa_wichuraiana	Rw1G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AciI	CCGC	5 cut(s)	67, 98, 261, 348, 356
AcsI	RAATTY	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	210, 338
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	95, 289
AjnI	CCWGG	2 cut(s)	44, 121
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	50, 113, 263
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	177, 345
ApoI	RAATTY	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	237
AsuII	TTCGAA	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	33, 231
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BbvI	GCAGC	2 cut(s)	189, 357
BceAI	ACGGC	1 cut(s)	142
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	46, 123
BcoDI	GTCTC	3 cut(s)	50, 113, 263
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	178, 262, 346
BlsI	GCNGC	3 cut(s)	179, 263, 347
Bme1390I	CCNGG	2 cut(s)	46, 123
BmrFI	CCNGG	2 cut(s)	46, 123
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 338
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	46, 123
BseGI	GGATG	2 cut(s)	54, 189
BseLI	CCNNNNNNNGG	2 cut(s)	210, 338
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	189, 357
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	2 cut(s)	346, 357
BslI	CCNNNNNNNGG	2 cut(s)	210, 338
BsmAI	GTCTC	3 cut(s)	50, 113, 263
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	2 cut(s)	346, 357
BsnI	GGCC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	33, 231
BspACI	CCGC	5 cut(s)	67, 98, 261, 348, 356
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	46, 123
Bst6I	CTCTTC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	54, 189
BstMAI	GTCTC	3 cut(s)	50, 113, 263
BstNI	CCWGG	2 cut(s)	46, 123
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	44, 121
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	189, 357
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	54, 189
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	247
CseI	GACGC	1 cut(s)	105
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	5 cut(s)	31, 214, 229, 242, 298
CviKI_1	RGCY	5 cut(s)	31, 214, 229, 242, 298
DdeI	CTNAG	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	242
Eco24I	GRGCYC	2 cut(s)	33, 231
EcoRII	CCWGG	2 cut(s)	44, 121
EcoT38I	GRGCYC	2 cut(s)	33, 231
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	1 cut(s)	388
FaiI	YATR	3 cut(s)	80, 276, 386
FaqI	GGGAC	2 cut(s)	346, 357
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	178, 262, 346
FokI	GGATG	2 cut(s)	61, 176
FriOI	GRGCYC	2 cut(s)	33, 231
Fsp4HI	GCNGC	3 cut(s)	178, 262, 346
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	178, 262, 346
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	4 cut(s)	5, 74, 186, 370
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	55, 295
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	2 cut(s)	177, 335
HpyF3I	CTNAG	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	2 cut(s)	189, 357
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	33, 231
MluCI	AATT	2 cut(s)	23, 310
MlyI	GAGTC	2 cut(s)	14, 379
MnlI	CCTC	5 cut(s)	21, 47, 178, 214, 253
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	46, 123
MvaI	CCWGG	2 cut(s)	46, 123
NlaIII	CATG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	143
PaqCI	CACCTGC	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	74, 186
PinAI	ACCGGT	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	179, 263, 347
PleI	GAGTC	2 cut(s)	13, 378
PpsI	GAGTC	2 cut(s)	13, 378
Psp6I	CCWGG	2 cut(s)	44, 121
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	44, 121
PstI	CTGCAG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	178, 262, 346
SbfI	CCTGCAGG	1 cut(s)	337
SchI	GAGTC	2 cut(s)	14, 379
ScrFI	CCNGG	2 cut(s)	46, 123
SdaI	CCTGCAGG	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	33, 231
SetI	ASST	6 cut(s)	13, 39, 150, 275, 300, 340
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse8387I	CCTGCAGG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	23, 310
SseBI	AGGCCT	1 cut(s)	242
SsiI	CCGC	5 cut(s)	67, 98, 261, 348, 356
SspMI	CTAG	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	44, 121
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	143, 170
TasI	AATT	2 cut(s)	23, 310
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	74, 186
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	177, 345
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.