Rmu_sc0035444.1_g000001

Fizzy-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035444.1
OG0009046
Physical Location & Seq
Reverse (-)
771 .. 2017
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035444.1_g000001.1.cds

Sequence Viewer

Length: 597 bp
atgcgagtctcaaatgactgcatcaacaagcttgttggccacaagtctgaggtatgcgggctgaaatggtccaatgatgacagggaacttgcttctggtggcaatgataatcagctcttggtgtggaaccagcactctcagcaacctgcgttgagactaacagagcacacagctgcagtaaaggccattgcttggtcaccccaccagagcggccttcttgcttctggaggtggaactgctgacagatgtatacgcttctggaacactgcaaatggccaccagttgaacagcgttgacacaggaagccaggtttgcaatctcgcatggagtaagaatgtgaatgagatagttagcactcatggatattcccaaaaccaaattatggtctggaagtatccatccatgtcaaaggttgccactctaactggccatagcatgcgagttctataccttgcaatgtcaccagatggtcagacaatagtcactggtgctggggatgaaactctcagattctggaatgtgtttccttcggtaaaaactccgacaccatgcaaagaaacaggtctttggtcactgggacgaactcaaatccgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914
Pfam Domains
Protein Families
WD40

Protein Analysis

198

Amino Acids

21.78

Weight (kDa)

8.88

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 2 cut(s) 192, 382
AccBSI CCGCTC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 250
AciI CCGC 2 cut(s) 57, 210
AcoI YGGCCR 3 cut(s) 37, 274, 427
AfiI CCNNNNNNNGG 2 cut(s) 192, 382
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 3 cut(s) 31, 115, 173
AluI AGCT 3 cut(s) 31, 115, 173
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 13, 148
AlwNI CAGNNNCTG 1 cut(s) 513
AoxI GGCC 5 cut(s) 37, 183, 211, 274, 427
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 189, 453
AvaII GGWCC 1 cut(s) 69
BalI TGGCCA 3 cut(s) 39, 276, 429
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 406, 461
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 13, 148
BfmI CTRYAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 2 cut(s) 174, 211
BlsI GCNGC 2 cut(s) 175, 212
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 584
BoxI GACNNNNGTC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 382
Bse1I ACTGG 4 cut(s) 280, 430, 490, 579
Bse3DI GCAATG 3 cut(s) 109, 186, 462
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 398, 502
BseLI CCNNNNNNNGG 2 cut(s) 192, 382
BseMI GCAATG 3 cut(s) 109, 186, 462
BseMII CTCAG 3 cut(s) 39, 152, 520
BseNI ACTGG 4 cut(s) 280, 430, 490, 579
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 491
BshFI GGCC 5 cut(s) 39, 185, 213, 276, 429
BsiHKAI GWGCWC 1 cut(s) 168
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 192, 382
BsmAI GTCTC 2 cut(s) 13, 148
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 5 cut(s) 39, 185, 213, 276, 429
Bsp1286I GDGCHC 1 cut(s) 168
BspACI CCGC 2 cut(s) 57, 210
BspANI GGCC 5 cut(s) 39, 185, 213, 276, 429
BspCNI CTCAG 3 cut(s) 40, 151, 519
BspLI GGNNCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 3 cut(s) 109, 186, 462
BsrI ACTGG 4 cut(s) 280, 430, 490, 579
BssNAI GTATAC 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 59, 437
BstDEI CTNAG 3 cut(s) 48, 138, 506
BstEII GGTNACC 1 cut(s) 195
BstF5I GGATG 2 cut(s) 398, 502
BstMAI GTCTC 2 cut(s) 13, 148
BstMWI GCNNNNNNNGC 3 cut(s) 139, 182, 312
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 160
BstZ17I GTATAC 1 cut(s) 251
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 5 cut(s) 39, 185, 213, 276, 429
BtsCI GGATG 2 cut(s) 398, 502
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 264, 483, 572
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 59, 437
CaiI CAGNNNCTG 1 cut(s) 513
Cfr13I GGNCC 1 cut(s) 69
CviAII CATG 5 cut(s) 324, 359, 403, 436, 549
DdeI CTNAG 3 cut(s) 48, 138, 506
EaeI YGGCCR 3 cut(s) 37, 274, 427
Eco47I GGWCC 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 195
EcoO65I GGTNACC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 5 cut(s) 327, 362, 406, 439, 552
FaqI GGGAC 1 cut(s) 591
FatI CATG 5 cut(s) 323, 358, 402, 435, 548
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 174, 211
FokI GGATG 2 cut(s) 385, 509
Fsp4HI GCNGC 2 cut(s) 174, 211
GluI GCNGC 2 cut(s) 174, 211
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 5 cut(s) 39, 185, 213, 276, 429
Hin1II CATG 5 cut(s) 327, 362, 406, 439, 552
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 6, 510
HphI GGTGA 2 cut(s) 189, 453
Hpy166II GTNNAC 2 cut(s) 251, 295
Hpy188I TCNGA 5 cut(s) 49, 474, 509, 543, 593
Hpy188III TCNNGA 4 cut(s) 225, 259, 388, 514
Hpy8I GTNNAC 2 cut(s) 251, 295
HpyAV CCTTC 2 cut(s) 224, 537
HpyCH4V TGCA 6 cut(s) 21, 176, 269, 315, 455, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 182, 312
HpyF3I CTNAG 3 cut(s) 48, 138, 506
Hsp92II CATG 5 cut(s) 327, 362, 406, 439, 552
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 4 cut(s) 195, 459, 481, 570
MbiI CCGCTC 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 3 cut(s) 39, 276, 429
MluCI AATT 1 cut(s) 378
MluNI TGGCCA 3 cut(s) 39, 276, 429
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 2 cut(s) 43, 221
Mox20I TGGCCA 3 cut(s) 39, 276, 429
MscI TGGCCA 3 cut(s) 39, 276, 429
Msp20I TGGCCA 3 cut(s) 39, 276, 429
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 139, 182, 312
NlaIII CATG 5 cut(s) 327, 362, 406, 439, 552
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 4 cut(s) 195, 459, 481, 570
NspI RCATGY 1 cut(s) 439
PaeI GCATGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 510
PflMI CCANNNNNTGG 2 cut(s) 192, 382
PkrI GCNGC 2 cut(s) 175, 212
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PshAI GACNNNNGTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 306
PspEI GGTNACC 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 174, 211
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 69
SphI GCATGC 1 cut(s) 439
Sse9I AATT 1 cut(s) 378
SsiI CCGC 2 cut(s) 57, 210
StyD4I CCNGG 1 cut(s) 306
TasI AATT 1 cut(s) 378
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 510
TscAI CASTG 3 cut(s) 271, 490, 579
TseFI GTSAC 4 cut(s) 195, 459, 481, 570
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 4 cut(s) 195, 459, 481, 570
TspDTI ATGAA 1 cut(s) 513
TspRI CASTG 3 cut(s) 271, 490, 579
Van91I CCANNNNNTGG 2 cut(s) 192, 382
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.