Rmu_sc0037823.1_g000001

Fizzy-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037823.1
OG0009046
Physical Location & Seq
Forward (+)
1 .. 484
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037823.1_g000001.1.cds

Sequence Viewer

Length: 484 bp
gctctccagctcgttccgggggatctcgagcctctcgtcgtcgtcgccgtcgaagacctcgacgtgcagcgacaggttcattccgtgccggtcgtcgtcgaggctccaccagtttgggctgaacgacaaggcgtcgccggtgaaggacggcgggaacgaggcctaccagaggctgctgagatcggagcttttcgggtctgatttcgattctttttcttctcctgcaggtggaggaggacaggtggcgtcgtcgccgattagtcccagcaagaacatgttgcggttcaagacggagcattccgggccaaactcgccgtattcgccgtcgattttgaggcatgatagtgggttttcgaatgagagctgtactcctcccaagcctcccagaaaggtccccaagacaccccataaggtaatttttatcccagatcttttacctttttactttcgtgttatgaatctgtgcataaatttatggggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914
Pfam Domains
Protein Families
WD40

Protein Analysis

160

Amino Acids

17.43

Weight (kDa)

9.65

Isoelectric Point (pI)

75.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 216
AciI CCGC 2 cut(s) 151, 281
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 470
AcyI GRCGYC 2 cut(s) 132, 246
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 169, 228
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 287
AhdI GACNNNNNGTC 1 cut(s) 131
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 3 cut(s) 10, 188, 364
AluI AGCT 3 cut(s) 10, 188, 364
AlwI GGATC 1 cut(s) 30
AlwNI CAGNNNCTG 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 160, 303
ApeKI GCWGC 2 cut(s) 67, 173
ApoI RAATTY 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 303, 392
AsuC2I CCSGG 2 cut(s) 18, 302
AsuHPI GGTGA 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 79, 160
BceAI ACGGC 4 cut(s) 32, 164, 299, 308
BcnI CCSGG 2 cut(s) 18, 302
BfmI CTRYAG 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 216
BglII AGATCT 1 cut(s) 428
BisI GCNGC 2 cut(s) 68, 174
BlsI GCNGC 2 cut(s) 69, 175
Bme1390I CCNGG 2 cut(s) 18, 302
Bme18I GGWCC 1 cut(s) 392
BmeRI GACNNNNNGTC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 303, 392
BmiI GGNNCC 2 cut(s) 105, 394
BmrFI CCNGG 2 cut(s) 18, 302
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 18, 302
BsaHI GRCGYC 2 cut(s) 132, 246
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 228
Bse118I RCCGGY 2 cut(s) 88, 137
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 169, 228
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 247, 361
BseXI GCAGC 2 cut(s) 79, 160
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 162, 305
BsiEI CGRYCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 4 cut(s) 17, 89, 138, 301
BslFI GGGAC 2 cut(s) 247, 378
BslI CCNNNNNNNGG 2 cut(s) 169, 228
BsmFI GGGAC 2 cut(s) 247, 378
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 2 cut(s) 162, 305
BsoBI CYCGRG 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 22, 180, 428
BspACI CCGC 2 cut(s) 151, 281
BspANI GGCC 2 cut(s) 162, 305
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 105, 394
BspMAI CTGCAG 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 354
BsrFI RCCGGY 2 cut(s) 88, 137
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 2 cut(s) 88, 137
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 22, 180, 428
BssNI GRCGYC 2 cut(s) 132, 246
BstACI GRCGYC 2 cut(s) 132, 246
BstBI TTCGAA 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 167
BstKTI GATC 3 cut(s) 25, 183, 431
BstMBI GATC 3 cut(s) 22, 180, 428
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 302, 311, 320
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 16, 300
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 79, 160
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 22, 428
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 2 cut(s) 22, 428
BsuRI GGCC 2 cut(s) 162, 305
BtrI CACGTC 1 cut(s) 64
BveI ACCTGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 173
Cfr10I RCCGGY 2 cut(s) 88, 137
Cfr13I GGNCC 2 cut(s) 303, 392
CseI GACGC 2 cut(s) 121, 235
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 275, 339
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 24, 182, 430
DpnII GATC 3 cut(s) 22, 180, 428
DriI GACNNNNNGTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 131
Eco147I AGGCCT 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 392
FaeI CATG 2 cut(s) 278, 342
FaiI YATR 6 cut(s) 276, 340, 409, 456, 468, 476
FaqI GGGAC 2 cut(s) 247, 378
FatI CATG 2 cut(s) 274, 338
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 68, 174
Fsp4HI GCNGC 2 cut(s) 68, 174
GluI GCNGC 2 cut(s) 68, 174
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 162, 305
HapII CCGG 4 cut(s) 17, 89, 138, 301
HgaI GACGC 2 cut(s) 121, 235
Hin1I GRCGYC 2 cut(s) 132, 246
Hin1II CATG 2 cut(s) 278, 342
HinfI GANTC 2 cut(s) 207, 458
HpaII CCGG 4 cut(s) 17, 89, 138, 301
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 185, 200
Hpy188III TCNNGA 2 cut(s) 26, 287
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 67, 225, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 311, 320
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 2 cut(s) 132, 246
Hsp92II CATG 2 cut(s) 278, 342
Kzo9I GATC 3 cut(s) 22, 180, 428
LmnI GCTCC 3 cut(s) 109, 185, 293
Lsp1109I GCAGC 2 cut(s) 79, 160
MaeII ACGT 1 cut(s) 63
MalI GATC 3 cut(s) 24, 182, 430
MboI GATC 3 cut(s) 22, 180, 428
MboII GAAGA 2 cut(s) 65, 208
MflI RGATCY 2 cut(s) 22, 428
MluCI AATT 2 cut(s) 415, 470
MslI CAYNNNNRTG 1 cut(s) 343
MspI CCGG 4 cut(s) 17, 89, 138, 301
MspR9I CCNGG 2 cut(s) 18, 302
Mva1269I GAATGC 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 302, 311, 320
NciI CCSGG 2 cut(s) 18, 302
NdeII GATC 3 cut(s) 22, 180, 428
NlaIII CATG 2 cut(s) 278, 342
NlaIV GGNNCC 2 cut(s) 105, 394
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 26
PaqCI CACCTGC 1 cut(s) 216
PceI AGGCCT 1 cut(s) 162
PciI ACATGT 1 cut(s) 274
PcsI WCGNNNNNNNCGW 5 cut(s) 33, 45, 48, 57, 154
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 207, 458
PkrI GCNGC 2 cut(s) 69, 175
PpuMI RGGWCCY 1 cut(s) 392
PscI ACATGT 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 105, 394
PspPI GGNCC 2 cut(s) 303, 392
PspPPI RGGWCCY 1 cut(s) 392
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 173
PsuI RGATCY 2 cut(s) 22, 428
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 343
SatI GCNGC 2 cut(s) 68, 174
Sau3AI GATC 3 cut(s) 22, 180, 428
Sau96I GGNCC 2 cut(s) 303, 392
SbfI CCTGCAGG 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 18, 302
SdaI CCTGCAGG 1 cut(s) 227
SfcI CTRYAG 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 1 cut(s) 392
SlaI CTCGAG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse8387I CCTGCAGG 1 cut(s) 227
Sse9I AATT 2 cut(s) 415, 470
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 2 cut(s) 151, 281
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 16, 300
TaiI ACGT 1 cut(s) 66
TaqI TCGA 7 cut(s) 27, 51, 60, 99, 205, 327, 354
TasI AATT 2 cut(s) 415, 470
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 207, 458
TseI GCWGC 2 cut(s) 67, 173
TspDTI ATGAA 2 cut(s) 68, 471
TspGWI ACGGA 2 cut(s) 73, 306
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 470
XceI RCATGY 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.