Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009046

Physical Location & Seq

Genomic Coordinates Forward (+)

45521344 .. 45528857

Gene Structure 7514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTTCGGAAATATTGAAGGAAGTCATGGACGCGGGGGCCGGAAAGGAAAGGACTGATGGTAGAAAGGGGGGACAATCAAAGGATGCTCAAACACCGGGGGGATCACTAGCTCGGGAAGAATCTGAAAAGTATTTCTATGTGCTGTATGCTATGCAAAAGCTTAGTGTCCAGATGAAGCTGCTGGGTTTTGGCAATTTCACTAACAAGAGGACTCATGGTAGCAAGGGGGGAGAATTAGAGGGTCCTGGTTATTACAATTTGGGGAATTTTCTTTGCGATCTCACACATTTCGTGGCAAAAGTGGGTTTTGATTTTGATTTGTTTTCCATTGATAGTGATTCCGTTTATCGGAAGATGCTGAATGATGAGACCGCGACTCATGTAATGGAATGGGAACCTATGGGATCGGATCTCTTGGATGATCGAGTTGAGAAGAAGCTGCGGGAATATTTCAAATTACTGGAGGACAAGGGATGTTCTTCCTCGGATATGGATGTGGCTGACAAGAACAGGACTCAAGGACAAAGCAATAATATCAAGGACGAAGAATCTGAGGACAATGAATCTGAGGACCAGGAAACTGAGGACGAGGATCCGAATCTGGCTGTTGAGAACGGCTGCGATGGTGAAAAATTATTAGGTCAGATGAAAACAAATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTATGTGTTTGTGCATGTGAAAGACTCTAAAAAGGAAGAAATCAGAGACGAAGAAGAAGGAGATGACGGTTGTCCCATCTGTCCTGGGGACCACTGTAACTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCTGTGCTGAGGGAGGACTTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCAACTATAAGTATATGCCCCTTGCGGCCTTCCCAAATTATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FtsJ

Protein Analysis

337

Amino Acids

37.71

Weight (kDa)

4.68

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13840 AT5G13840
fragaria_vesca	FvH4_7g22780 FvH4_7g22780 FvH4_7g22780
malus_domestica	MD01G1136000.v1.1 MD07G1200700.v1.1 MD09G1224400.v1.1
prunus_persica	Prupe.2G237500_v2.0.a1 Prupe.2G237500_v2.0.a1
pyrus_communis	pycom01g15680 pycom07g18780
rosa_chinensis	RchiOBHm_Chr1g0367881
rosa_multiflora	Rmu_sc0035444.1_g000001 Rmu_sc0037823.1_g000001
rosa_roxburghii	Rroxscaffold_4G00289160
rosa_rugosa	Rorug01G0337400
rosa_samantha	Rh1AG344300 Rh1BG306300 Rh1CG321900 Rh1DG338500
rosa_wichuraiana	Rw1G030650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	963
AccII	CGCG	2 cut(s)	35, 377
AciI	CCGC	4 cut(s)	35, 375, 445, 992
AclWI	GGATC	5 cut(s)	112, 415, 420, 590, 603
AcsI	RAATTY	1 cut(s)	268
AcyI	GRCGYC	2 cut(s)	841, 960
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	2 cut(s)	19, 457
AjnI	CCWGG	4 cut(s)	247, 576, 775, 823
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	4 cut(s)	113, 163, 181, 442
AluI	AGCT	4 cut(s)	113, 163, 181, 442
Alw26I	GTCTC	3 cut(s)	365, 732, 848
AlwI	GGATC	5 cut(s)	112, 415, 420, 590, 603
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	39, 826, 993
ApeKI	GCWGC	3 cut(s)	181, 442, 621
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AspS9I	GGNCC	4 cut(s)	39, 245, 574, 781
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	3 cut(s)	245, 574, 781
BamHI	GGATCC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	168, 429, 608
BccI	CCATC	3 cut(s)	53, 620, 776
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	4 cut(s)	249, 578, 777, 825
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	365, 732, 848
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	4 cut(s)	182, 443, 622, 993
BlsI	GCNGC	4 cut(s)	183, 444, 623, 994
Bme1390I	CCNGG	5 cut(s)	99, 249, 578, 777, 825
Bme18I	GGWCC	3 cut(s)	245, 574, 781
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	4 cut(s)	39, 245, 574, 781
BmiI	GGNNCC	5 cut(s)	40, 246, 399, 597, 782
BmrFI	CCNGG	5 cut(s)	99, 249, 578, 777, 825
BmrI	ACTGGG	1 cut(s)	961
BmsI	GCATC	3 cut(s)	76, 348, 652
BmuI	ACTGGG	1 cut(s)	961
BoxI	GACNNNNGTC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	485, 687
Bpu10I	CCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	841, 960
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	98, 486, 776, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	468, 956
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	4 cut(s)	249, 578, 777, 825
BseDI	CCNNGG	4 cut(s)	98, 486, 776, 803
BseGI	GGATG	4 cut(s)	91, 427, 482, 502
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	546, 561, 576, 888, 931
BseNI	ACTGG	2 cut(s)	468, 956
BseXI	GCAGC	3 cut(s)	168, 429, 608
BseYI	CCCAGC	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	35, 377
BshFI	GGCC	3 cut(s)	41, 828, 995
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	42, 98
BslFI	GGGAC	5 cut(s)	87, 750, 794, 894, 971
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	3 cut(s)	365, 732, 848
BsmBI	CGTCTC	2 cut(s)	732, 848
BsmFI	GGGAC	5 cut(s)	87, 750, 794, 894, 971
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	41, 828, 995
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
Bsp19I	CCATGG	1 cut(s)	803
BspACI	CCGC	4 cut(s)	35, 375, 445, 992
BspANI	GGCC	3 cut(s)	41, 828, 995
BspCNI	CTCAG	5 cut(s)	547, 562, 577, 889, 930
BspFNI	CGCG	2 cut(s)	35, 377
BspLI	GGNNCC	5 cut(s)	40, 246, 399, 597, 782
BspPI	GGATC	5 cut(s)	112, 415, 420, 590, 603
BspTNI	GGTCTC	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	468, 956
BssECI	CCNNGG	4 cut(s)	98, 486, 776, 803
BssMI	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
BssNI	GRCGYC	2 cut(s)	841, 960
BssT1I	CCWWGG	1 cut(s)	803
Bst2UI	CCWGG	4 cut(s)	249, 578, 777, 825
Bst4CI	ACNGT	2 cut(s)	761, 788
BstACI	GRCGYC	2 cut(s)	841, 960
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	6 cut(s)	164, 555, 570, 585, 897, 917
BstDSI	CCRYGG	1 cut(s)	803
BstF5I	GGATG	4 cut(s)	91, 427, 482, 502
BstFNI	CGCG	2 cut(s)	35, 377
BstKTI	GATC	6 cut(s)	107, 283, 410, 415, 427, 598
BstMAI	GTCTC	3 cut(s)	365, 732, 848
BstMBI	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	893
BstNI	CCWGG	4 cut(s)	249, 578, 777, 825
BstNSI	RCATGY	2 cut(s)	710, 891
BstPAI	GACNNNNGTC	1 cut(s)	762
BstSCI	CCNGG	5 cut(s)	97, 247, 576, 775, 823
BstUI	CGCG	2 cut(s)	35, 377
BstV1I	GCAGC	3 cut(s)	168, 429, 608
BstX2I	RGATCY	2 cut(s)	412, 595
BstXI	CCANNNNNNTGG	1 cut(s)	836
BstYI	RGATCY	2 cut(s)	412, 595
BsuRI	GGCC	3 cut(s)	41, 828, 995
BtgI	CCRYGG	1 cut(s)	803
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	4 cut(s)	91, 427, 482, 502
BtsIMutI	CAGTG	2 cut(s)	784, 949
Cac8I	GCNNGC	1 cut(s)	889
Cfr13I	GGNCC	4 cut(s)	39, 245, 574, 781
CseI	GACGC	2 cut(s)	41, 830
CspCI	CAANNNNNGTGG	2 cut(s)	850, 885
CviAII	CATG	7 cut(s)	28, 218, 383, 707, 804, 888, 1011
DdeI	CTNAG	6 cut(s)	164, 555, 570, 585, 897, 917
DpnI	GATC	6 cut(s)	106, 282, 409, 414, 426, 597
DpnII	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
Eco130I	CCWWGG	1 cut(s)	803
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	245, 574, 781
Eco88I	CYCGRG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	4 cut(s)	247, 576, 775, 823
EcoT14I	CCWWGG	1 cut(s)	803
ErhI	CCWWGG	1 cut(s)	803
Esp3I	CGTCTC	2 cut(s)	732, 848
FaeI	CATG	7 cut(s)	31, 221, 386, 710, 807, 891, 1014
FaqI	GGGAC	5 cut(s)	87, 750, 794, 894, 971
FatI	CATG	7 cut(s)	27, 217, 382, 706, 803, 887, 1010
FauI	CCCGC	2 cut(s)	28, 438
Fnu4HI	GCNGC	4 cut(s)	182, 443, 622, 993
FokI	GGATG	4 cut(s)	98, 434, 489, 509
Fsp4HI	GCNGC	4 cut(s)	182, 443, 622, 993
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	4 cut(s)	182, 443, 622, 993
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	2 cut(s)	485, 687
HaeIII	GGCC	3 cut(s)	41, 828, 995
HapII	CCGG	2 cut(s)	42, 98
HgaI	GACGC	2 cut(s)	41, 830
Hin1I	GRCGYC	2 cut(s)	841, 960
Hin1II	CATG	7 cut(s)	31, 221, 386, 710, 807, 891, 1014
HindIII	AAGCTT	1 cut(s)	161
HpaII	CCGG	2 cut(s)	42, 98
HphI	GGTGA	1 cut(s)	641
Hpy188III	TCNNGA	3 cut(s)	116, 172, 919
HpyAV	CCTTC	3 cut(s)	13, 743, 1006
HpyCH4III	ACNGT	2 cut(s)	761, 788
HpyCH4IV	ACGT	1 cut(s)	960
HpyCH4V	TGCA	4 cut(s)	157, 706, 861, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	893
HpyF3I	CTNAG	6 cut(s)	164, 555, 570, 585, 897, 917
HpySE526I	ACGT	1 cut(s)	960
Hsp92I	GRCGYC	2 cut(s)	841, 960
Hsp92II	CATG	7 cut(s)	31, 221, 386, 710, 807, 891, 1014
Kzo9I	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
Lsp1109I	GCAGC	3 cut(s)	168, 429, 608
LweI	GCATC	3 cut(s)	76, 348, 652
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	960
MaeIII	GTNAC	2 cut(s)	788, 947
MalI	GATC	6 cut(s)	106, 282, 409, 414, 426, 597
MboI	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
MboII	GAAGA	8 cut(s)	131, 367, 448, 474, 560, 740, 755, 758
MflI	RGATCY	2 cut(s)	412, 595
MluCI	AATT	7 cut(s)	196, 236, 259, 268, 458, 635, 1003
MlyI	GAGTC	5 cut(s)	208, 373, 511, 680, 710
MspI	CCGG	2 cut(s)	42, 98
MspR9I	CCNGG	5 cut(s)	99, 249, 578, 777, 825
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	4 cut(s)	249, 578, 777, 825
MvnI	CGCG	2 cut(s)	35, 377
MwoI	GCNNNNNNNGC	1 cut(s)	893
NciI	CCSGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	803
NdeII	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
NlaIII	CATG	7 cut(s)	31, 221, 386, 710, 807, 891, 1014
NlaIV	GGNNCC	5 cut(s)	40, 246, 399, 597, 782
NmuCI	GTSAC	1 cut(s)	947
NspI	RCATGY	2 cut(s)	710, 891
PaeI	GCATGC	1 cut(s)	891
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	5 cut(s)	122, 341, 551, 566, 601
PkrI	GCNGC	4 cut(s)	183, 444, 623, 994
PleI	GAGTC	5 cut(s)	208, 373, 511, 679, 710
PpsI	GAGTC	5 cut(s)	208, 373, 511, 679, 710
PpuMI	RGGWCCY	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	762
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	4 cut(s)	247, 576, 775, 823
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	4 cut(s)	247, 576, 775, 823
PspN4I	GGNNCC	5 cut(s)	40, 246, 399, 597, 782
PspPI	GGNCC	4 cut(s)	39, 245, 574, 781
PspPPI	RGGWCCY	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	412, 595
SatI	GCNGC	4 cut(s)	182, 443, 622, 993
Sau3AI	GATC	6 cut(s)	104, 280, 407, 412, 424, 595
Sau96I	GGNCC	4 cut(s)	39, 245, 574, 781
SchI	GAGTC	5 cut(s)	208, 373, 511, 680, 710
ScrFI	CCNGG	5 cut(s)	99, 249, 578, 777, 825
SetI	ASST	8 cut(s)	115, 165, 183, 403, 444, 646, 926, 963
SfaNI	GCATC	3 cut(s)	76, 348, 652
SinI	GGWCC	3 cut(s)	245, 574, 781
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SphI	GCATGC	1 cut(s)	891
Sse9I	AATT	7 cut(s)	196, 236, 259, 268, 458, 635, 1003
SsiI	CCGC	4 cut(s)	35, 375, 445, 992
SspI	AATATT	2 cut(s)	15, 452
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	5 cut(s)	97, 247, 576, 775, 823
StyI	CCWWGG	1 cut(s)	803
TaaI	ACNGT	2 cut(s)	761, 788
TaiI	ACGT	1 cut(s)	963
TaqI	TCGA	1 cut(s)	427
TasI	AATT	7 cut(s)	196, 236, 259, 268, 458, 635, 1003
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	5 cut(s)	122, 341, 551, 566, 601
TscAI	CASTG	2 cut(s)	791, 956
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	3 cut(s)	181, 442, 621
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	3 cut(s)	191, 579, 665
TspGWI	ACGGA	2 cut(s)	334, 671
TspRI	CASTG	2 cut(s)	791, 956
VpaK11BI	GGWCC	3 cut(s)	245, 574, 781
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	2 cut(s)	710, 891
XspI	CTAG	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.