MD09G1247700.v1.1

Phosphomevalonate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
31774563 .. 31779219
4657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1247700.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGGAGGCCGTAGTTGCTTCAGCTCCAGGGAAGGTGTTGTTGACTGGAGGTTACCTAATTCTGGAGAGACCCAATGCAGGCCTTGTACTCAGCACCAACGCCCGCTTCTTCGCCATTGTCAAACCACTTTACCAGCCTCTCAAGCCTGATAGTTGGGCCTGGGGTTGGACGGATGTGAAATTGACGTCTCCTCAGCTCGGCAGAGAAAGCATCTACAAGCTCTCCCTAAAAAATTTATCACTTGATTATGTTTCTTCTGGTGACTCGAGGAACCCTTTTGTGGAACAAGCAGTGCAATACTGTGTAGCTGCTGCCCGTGCAACAGTTGACAAGAAGAACAAGGATTCATTAGAAAAACTACTATTGCATGGTTTTGATATCACCATCTTAGGTGGCAAAGACTTTTATTCTTATCGGAATCAGATTGAAGCCCGTGGTCTGCCTTTGACTCCAGACGCATTGGCTGCACTACCTCCTTTTGCATCAATTACTTTCAATGATGAAGGGTCAAATGCAAAAAATTGTAAGCCTGAAGTTGCAAAAACTGGATTGGGTTCATCTGCGGCAATGACAACCGCTGTTGTTGCTGCGTTGCTTCATTACCTTGGAGTTGTTGATCTTTCATCCACGCTTAAAGATCATCAACATGAAAAGTACACTGCAGATCTTGATTTGGTGCATGTGATAGCTCAAACTGCTCACTGTATTGCACAGGGAAAAGTGGGCAGCGGGTTTGATGTTAGTTCTGCAGTTTATGGAAGTCAACGTTATGTCCGCTTTTCACCAGAAGTTATTTCTTCTGCTCAGGTTGCAGTGACGGGAACTCCACTACAAGAAGTCATTCCACAAATTCTAAAAGGAAAGTGGGACCATGATAGGACTAAGTTCTCCTTGCCACCATTGATGACTCTTTTACTTGGAGAACCAGGAACTGGAGGATCGTCCACTCCATCAATGGTGGGTGCTGTGAAAAAGTGGCAGAAGTCTGACCCTCAAAAATCCCTGGAGACATGGAAAAAGTTGTCAGAGGCCAATTCATCACTTGAAATGCAACTCAATACGTTAAGCAAATTGGCAGAAGAACACTGGGAAGAATATAAAAGCTTGATAAACAGCTGCAGCATTCTCAAATCAGAAAAGTGGACACAGCAAGTCACTACACCAAACCAAGAAATAATTGTTAAAGCATTATTAGGAGCAAGAGATGCTATGCTTGGGATCAGGTATCATATGCATCAGATGGGGGAGGCTGCAGGTGTTCCGATAGAACCAGAATCACAAACAAAGCTTTTAGATGCTACGATGAGTATGGAAGGAGTTTTGTTGGCTGGAGTTCCTGGAGCAGGTGGGTTTGATGCGGTATTTGCTGTTACCTTAGGGGATGCTAGAAGCCATGTGTCGAATTCTTGGAGTTCATTCAATGTTTTGGCCTTGTTAGTTAGAGAAGATCCTCAAGGCGTTTCTTTGGAGAATGCTGATCCACGAACCAAGGCAATCACTTCATCCATTTCCTCCGTTAATATTGAATAA

Protein Analysis

510

Amino Acids

54.97

Weight (kDa)

6.29

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010984)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1244, 1334
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 2 cut(s) 1244, 1334
AccB7I CCANNNNNTGG 1 cut(s) 932
AciI CCGC 6 cut(s) 103, 563, 576, 729, 775, 1358
AclI AACGTT 1 cut(s) 766
AclWI GGATC 4 cut(s) 946, 1226, 1442, 1472
AcsI RAATTY 3 cut(s) 232, 849, 1402
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 87, 656
AfiI CCNNNNNNNGG 7 cut(s) 61, 77, 165, 197, 280, 932, 1343
AgsI TTSAA 5 cut(s) 428, 496, 1046, 1420, 1526
AjnI CCWGG 5 cut(s) 25, 158, 925, 1002, 1336
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 8 cut(s) 23, 196, 220, 308, 689, 1104, 1116, 1288
AluI AGCT 8 cut(s) 23, 196, 220, 308, 689, 1104, 1116, 1288
Alw26I GTCTC 3 cut(s) 61, 192, 1001
AlwI GGATC 4 cut(s) 946, 1226, 1442, 1472
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 5 cut(s) 6, 79, 156, 1029, 1428
ApeKI GCWGC 8 cut(s) 308, 311, 464, 587, 726, 1116, 1119, 1250
ApoI RAATTY 3 cut(s) 232, 849, 1402
Asp700I GAANNNNTTC 1 cut(s) 840
AspS9I GGNCC 2 cut(s) 156, 868
AsuHPI GGTGA 3 cut(s) 272, 373, 774
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 868
AxyI CCTNAGG 1 cut(s) 1375
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 8 cut(s) 295, 298, 451, 574, 738, 1103, 1131, 1237
BccI CCATC 3 cut(s) 392, 958, 1234
BciT130I CCWGG 5 cut(s) 27, 160, 927, 1004, 1338
BcoDI GTCTC 3 cut(s) 61, 192, 1001
BfaI CTAG 1 cut(s) 1386
BfmI CTRYAG 4 cut(s) 660, 747, 1117, 1251
BfuAI ACCTGC 2 cut(s) 1244, 1334
BglII AGATCT 1 cut(s) 664
BisI GCNGC 9 cut(s) 309, 312, 465, 564, 588, 727, 1117, 1120, 1251
BlsI GCNGC 9 cut(s) 310, 313, 466, 565, 589, 728, 1118, 1121, 1252
Bme1390I CCNGG 5 cut(s) 27, 160, 927, 1004, 1338
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 156, 868
BmiI GGNNCC 2 cut(s) 272, 869
BmrFI CCNGG 5 cut(s) 27, 160, 927, 1004, 1338
BmrI ACTGGG 1 cut(s) 1096
BmsI GCATC 7 cut(s) 219, 491, 1195, 1243, 1285, 1345, 1372
BmuI ACTGGG 1 cut(s) 1096
BpmI CTGGAG 8 cut(s) 9, 66, 83, 435, 954, 1025, 1350, 1359
Bpu10I CCTNAGC 2 cut(s) 192, 804
BpuEI CTTGAG 2 cut(s) 125, 1437
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 6 cut(s) 26, 159, 433, 604, 1002, 1488
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 808, 838
Bsc4I CCNNNNNNNGG 7 cut(s) 61, 77, 165, 197, 280, 932, 1343
Bse1I ACTGG 4 cut(s) 49, 550, 937, 1091
Bse21I CCTNAGG 1 cut(s) 1375
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 5 cut(s) 27, 160, 927, 1004, 1338
BseDI CCNNGG 6 cut(s) 26, 159, 433, 604, 1002, 1488
BseGI GGATG 4 cut(s) 178, 623, 1387, 1502
BseLI CCNNNNNNNGG 7 cut(s) 61, 77, 165, 197, 280, 932, 1343
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 3 cut(s) 103, 206, 818
BseNI ACTGG 4 cut(s) 49, 550, 937, 1091
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 8 cut(s) 295, 298, 451, 574, 738, 1103, 1131, 1237
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 5 cut(s) 8, 81, 158, 1031, 1430
BsiHKCI CYCGRG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 7 cut(s) 61, 77, 165, 197, 280, 932, 1343
BsmAI GTCTC 3 cut(s) 61, 192, 1001
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 881
BsmI GAATGC 2 cut(s) 1122, 1477
BsnI GGCC 5 cut(s) 8, 81, 158, 1031, 1430
Bso31I GGTCTC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 265
Bsp143I GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
BspACI CCGC 6 cut(s) 103, 563, 576, 729, 775, 1358
BspANI GGCC 5 cut(s) 8, 81, 158, 1031, 1430
BspCNI CTCAG 3 cut(s) 102, 205, 817
BspLI GGNNCC 2 cut(s) 272, 869
BspMAI CTGCAG 4 cut(s) 664, 751, 1121, 1255
BspMI ACCTGC 2 cut(s) 1244, 1334
BspPI GGATC 4 cut(s) 946, 1226, 1442, 1472
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 4 cut(s) 49, 550, 937, 1091
BssECI CCNNGG 6 cut(s) 26, 159, 433, 604, 1002, 1488
BssMI GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 604, 1488
Bst2UI CCWGG 5 cut(s) 27, 160, 927, 1004, 1338
Bst4CI ACNGT 3 cut(s) 302, 325, 704
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 2 cut(s) 464, 1205
BstC8I GCNNGC 2 cut(s) 79, 103
BstDEI CTNAG 6 cut(s) 89, 192, 388, 804, 882, 1375
BstDSI CCRYGG 1 cut(s) 433
BstEII GGTNACC 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 1341
BstF5I GGATG 4 cut(s) 178, 623, 1387, 1502
BstKTI GATC 7 cut(s) 619, 640, 667, 941, 1221, 1450, 1480
BstMAI GTCTC 3 cut(s) 61, 192, 1001
BstMBI GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
BstNI CCWGG 5 cut(s) 27, 160, 927, 1004, 1338
BstNSI RCATGY 1 cut(s) 683
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 5 cut(s) 25, 158, 925, 1002, 1336
BstSFI CTRYAG 4 cut(s) 660, 747, 1117, 1251
BstV1I GCAGC 8 cut(s) 295, 298, 451, 574, 738, 1103, 1131, 1237
BstX2I RGATCY 2 cut(s) 664, 1447
BstYI RGATCY 2 cut(s) 664, 1447
Bsu36I CCTNAGG 1 cut(s) 1375
BsuRI GGCC 5 cut(s) 8, 81, 158, 1031, 1430
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 4 cut(s) 178, 623, 1387, 1502
BtsI GCAGTG 3 cut(s) 297, 657, 819
BtsIMutI CAGTG 5 cut(s) 297, 657, 700, 819, 1084
BveI ACCTGC 2 cut(s) 1244, 1334
Cac8I GCNNGC 2 cut(s) 79, 103
CaiI CAGNNNCTG 1 cut(s) 932
Cfr13I GGNCC 2 cut(s) 156, 868
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 86, 655
CviAII CATG 6 cut(s) 368, 647, 680, 872, 1011, 1394
CviQI GTAC 2 cut(s) 86, 655
DdeI CTNAG 6 cut(s) 89, 192, 388, 804, 882, 1375
DpnI GATC 7 cut(s) 618, 639, 666, 940, 1220, 1449, 1479
DpnII GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
Eco130I CCWWGG 2 cut(s) 604, 1488
Eco147I AGGCCT 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 1375
Eco88I CYCGRG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 1341
EcoO65I GGTNACC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 1402
EcoRII CCWGG 5 cut(s) 25, 158, 925, 1002, 1336
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 604, 1488
EcoT22I ATGCAT 1 cut(s) 1236
ErhI CCWWGG 2 cut(s) 604, 1488
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 6 cut(s) 371, 650, 683, 875, 1014, 1397
FalI AAGNNNNNCTT 2 cut(s) 875, 907
FaqI GGGAC 1 cut(s) 881
FatI CATG 6 cut(s) 367, 646, 679, 871, 1010, 1393
FauI CCCGC 2 cut(s) 110, 722
FauNDI CATATG 1 cut(s) 1230
Fnu4HI GCNGC 9 cut(s) 309, 312, 465, 564, 588, 727, 1117, 1120, 1251
FokI GGATG 4 cut(s) 185, 610, 1394, 1489
Fsp4HI GCNGC 9 cut(s) 309, 312, 465, 564, 588, 727, 1117, 1120, 1251
FspBI CTAG 1 cut(s) 1386
GluI GCNGC 9 cut(s) 309, 312, 465, 564, 588, 727, 1117, 1120, 1251
GsuI CTGGAG 8 cut(s) 9, 66, 83, 435, 954, 1025, 1350, 1359
HaeIII GGCC 5 cut(s) 8, 81, 158, 1031, 1430
HgaI GACGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 6 cut(s) 371, 650, 683, 875, 1014, 1397
HincII GTYRAC 3 cut(s) 42, 328, 764
HindII GTYRAC 3 cut(s) 42, 328, 764
HindIII AAGCTT 2 cut(s) 1102, 1286
HinfI GANTC 6 cut(s) 263, 344, 418, 448, 907, 1274
HphI GGTGA 3 cut(s) 272, 373, 774
Hpy166II GTNNAC 6 cut(s) 42, 328, 657, 764, 945, 1143
Hpy188I TCNGA 7 cut(s) 417, 423, 988, 1027, 1135, 1239, 1263
Hpy188III TCNNGA 3 cut(s) 62, 452, 668
Hpy8I GTNNAC 6 cut(s) 42, 328, 657, 764, 945, 1143
HpyAV CCTTC 3 cut(s) 25, 497, 1307
HpyCH4III ACNGT 3 cut(s) 302, 325, 704
HpyCH4IV ACGT 3 cut(s) 185, 766, 1061
HpyF3I CTNAG 6 cut(s) 89, 192, 388, 804, 882, 1375
HpySE526I ACGT 3 cut(s) 185, 766, 1061
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 6 cut(s) 371, 650, 683, 875, 1014, 1397
Kzo9I GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
LmnI GCTCC 3 cut(s) 28, 1196, 1340
Lsp1109I GCAGC 8 cut(s) 295, 298, 451, 574, 738, 1103, 1131, 1237
LweI GCATC 7 cut(s) 219, 491, 1195, 1243, 1285, 1345, 1372
MaeI CTAG 1 cut(s) 1386
MaeII ACGT 3 cut(s) 185, 766, 1061
MaeIII GTNAC 5 cut(s) 50, 260, 814, 1153, 1369
MalI GATC 7 cut(s) 618, 639, 666, 940, 1220, 1449, 1479
MboI GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
MboII GAAGA 7 cut(s) 100, 246, 346, 789, 1091, 1103, 1457
MflI RGATCY 2 cut(s) 664, 1447
MlyI GAGTC 3 cut(s) 257, 442, 901
MmeI TCCRAC 1 cut(s) 146
Mph1103I ATGCAT 1 cut(s) 1236
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 4 cut(s) 633, 1064, 1182, 1518
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 3 cut(s) 578, 729, 1116
MspR9I CCNGG 5 cut(s) 27, 160, 927, 1004, 1338
Mva1269I GAATGC 2 cut(s) 1122, 1477
MvaI CCWGG 5 cut(s) 27, 160, 927, 1004, 1338
NdeI CATATG 1 cut(s) 1230
NdeII GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
NlaIII CATG 6 cut(s) 371, 650, 683, 875, 1014, 1397
NlaIV GGNNCC 2 cut(s) 272, 869
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 3 cut(s) 260, 814, 1153
NsiI ATGCAT 1 cut(s) 1236
NspI RCATGY 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 265
PaqCI CACCTGC 2 cut(s) 1244, 1334
PceI AGGCCT 1 cut(s) 81
PctI GAATGC 2 cut(s) 1122, 1477
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 3 cut(s) 344, 418, 1274
PflMI CCANNNNNTGG 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 1336
PkrI GCNGC 9 cut(s) 310, 313, 466, 565, 589, 728, 1118, 1121, 1252
PleI GAGTC 3 cut(s) 257, 442, 901
PpsI GAGTC 3 cut(s) 257, 442, 901
Psp1406I AACGTT 1 cut(s) 766
Psp6I CCWGG 5 cut(s) 25, 158, 925, 1002, 1336
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 5 cut(s) 25, 158, 925, 1002, 1336
PspN4I GGNNCC 2 cut(s) 272, 869
PspPI GGNCC 2 cut(s) 156, 868
PspXI VCTCGAGB 1 cut(s) 265
PstI CTGCAG 4 cut(s) 664, 751, 1121, 1255
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 2 cut(s) 664, 1447
PvuII CAGCTG 1 cut(s) 1116
RsaI GTAC 2 cut(s) 87, 656
RsaNI GTAC 2 cut(s) 86, 655
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 4 cut(s) 633, 1064, 1182, 1518
SatI GCNGC 9 cut(s) 309, 312, 465, 564, 588, 727, 1117, 1120, 1251
Sau3AI GATC 7 cut(s) 616, 637, 664, 938, 1218, 1447, 1477
Sau96I GGNCC 2 cut(s) 156, 868
SchI GAGTC 3 cut(s) 257, 442, 901
ScrFI CCNGG 5 cut(s) 27, 160, 927, 1004, 1338
SfaNI GCATC 7 cut(s) 219, 491, 1195, 1243, 1285, 1345, 1372
SfcI CTRYAG 4 cut(s) 660, 747, 1117, 1251
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 140, 265, 1452
SmoI CTYRAG 3 cut(s) 140, 265, 1452
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 6 cut(s) 103, 563, 576, 729, 775, 1358
SspI AATATT 1 cut(s) 1522
SspMI CTAG 1 cut(s) 1386
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 5 cut(s) 25, 158, 925, 1002, 1336
StyI CCWWGG 2 cut(s) 604, 1488
TaaI ACNGT 3 cut(s) 302, 325, 704
TaiI ACGT 3 cut(s) 188, 769, 1064
TaqI TCGA 2 cut(s) 266, 1400
TatI WGTACW 2 cut(s) 85, 654
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 3 cut(s) 344, 418, 1274
Tru1I TTAA 4 cut(s) 633, 1064, 1182, 1518
Tru9I TTAA 4 cut(s) 633, 1064, 1182, 1518
TscAI CASTG 5 cut(s) 297, 664, 707, 819, 1091
TseFI GTSAC 3 cut(s) 260, 814, 1153
TseI GCWGC 8 cut(s) 308, 311, 464, 587, 726, 1116, 1119, 1250
Tsp45I GTSAC 3 cut(s) 260, 814, 1153
TspDTI ATGAA 9 cut(s) 336, 516, 546, 587, 612, 663, 1026, 1404, 1491
TspGWI ACGGA 2 cut(s) 185, 1504
TspRI CASTG 5 cut(s) 297, 664, 707, 819, 1091
Van91I CCANNNNNTGG 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 868
XagI CCTNNNNNAGG 1 cut(s) 1341
XapI RAATTY 3 cut(s) 232, 849, 1402
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 1 cut(s) 1386
ZraI GACGTC 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.