Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010984

Physical Location & Seq

Genomic Coordinates Reverse (-)

10456992 .. 10462190

Gene Structure 5199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0132800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCGTCTCTTGCTCTTGCTCTCGCAAACCCTAGCGATGCCGTCACCGGAGTCGAGCACTTGGCGCACGATCTCGGTCGCGCTCCTCCCTTTCGCGATCTCCCACAACGATCGCGTGTGTTGACCTCTCCTTTTGGTTGGTTTCCTGATGGGTACGGATCTGCCATGGCAGATCTCCTTTGGCTTCCTTTTGGCTGGCGAGGACGGCCACGAAGAGGGCGGTTGAAGGGTGGTCTTCGATTCGGATGGGGCGGAACTCAGATGGACTGGTTGAGGCGGATAGTGGCGCTATGGATGTTACTGGCGGCGCAGACGCTGTTGGCAGCGGAGGTTAGGAAATTTGATATTGTTAAATTCAAAATGTCTTCTCCAAGCAAGAGGAGAGAGATGGATGTCATGAAGTTGATGATGAGTGACTATAATGTGGAGACAATAAATGATGGCCTCAATGAGTTCAATGTGGAATTCCATGGTCCAAAAGAAAGCATTTATGAAGGCGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATTGGCTTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAATCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTCTATCCAAATCCATCAGACCCACTCAATGGTGATGCAGCGTCATTGATGATGAAGGACCGCAAACTGTACGATCAGAAAGTGAAAGAGTATTGTGAAAAATATGCAAAGAAGGAGCATATTACTAATACAACACCAGAAGAAGAAAGTGGTGATGAGAATATTAGTGATGAAGGAAGCGATTCGAGTGACGATGACATTGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

5.17

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	130 - 262	5.9e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31910 AT1G31910
fragaria_vesca	FvH4_5g23300
malus_domestica	MD09G1247700.v1.1 MD17G1240600.v1.1
prunus_persica	Prupe.5G026300_v2.0.a1 Prupe.5G026300_v2.0.a1
pyrus_communis	pycom09g16520 pycom17g24390
rosa_chinensis	RchiOBHm_Chr7g0212251
rosa_laevigata	RLG00000002903
rosa_multiflora	Rmu_sc0001911.1_g000042 Rmu_sc0002882.1_g000066
rosa_roxburghii	Rroxscaffold_3G00246980
rosa_rugosa	Rorug07G0132800
rosa_samantha	Rh7AG265600 Rh7BG259800 Rh7CG282400 Rh7DG272500
rosa_wichuraiana	Rw7G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccII	CGCG	3 cut(s)	81, 96, 115
AciI	CCGC	7 cut(s)	220, 252, 277, 305, 326, 498, 754
AclI	AACGTT	1 cut(s)	588
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	4 cut(s)	338, 353, 464, 510
AfaI	GTAC	2 cut(s)	155, 764
AfiI	CCNNNNNNNGG	3 cut(s)	215, 557, 722
AgsI	TTSAA	4 cut(s)	226, 358, 457, 671
AluBI	AGCT	2 cut(s)	523, 598
AluI	AGCT	2 cut(s)	523, 598
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	3 cut(s)	12, 422, 552
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	2 cut(s)	206, 442
ApeKI	GCWGC	2 cut(s)	323, 731
ApoI	RAATTY	4 cut(s)	338, 353, 464, 510
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	874
AspLEI	GCGC	4 cut(s)	67, 83, 289, 310
AspS9I	GGNCC	2 cut(s)	473, 751
AsuHPI	GGTGA	3 cut(s)	37, 737, 857
AvaII	GGWCC	2 cut(s)	473, 751
BbsI	GAAGAC	2 cut(s)	227, 357
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	335, 743
BccI	CCATC	6 cut(s)	143, 240, 256, 382, 434, 715
BceAI	ACGGC	2 cut(s)	26, 221
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BcoDI	GTCTC	3 cut(s)	12, 422, 552
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	290
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	3 cut(s)	306, 324, 732
BlsI	GCNGC	3 cut(s)	307, 325, 733
Bme18I	GGWCC	2 cut(s)	473, 751
BmgT120I	GGNCC	2 cut(s)	473, 751
BmsI	GCATC	3 cut(s)	28, 520, 718
BpiI	GAAGAC	2 cut(s)	227, 357
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	165, 469
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 557, 722
Bse1I	ACTGG	2 cut(s)	272, 306
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	165, 469
BseGI	GGATG	4 cut(s)	251, 300, 397, 580
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	215, 557, 722
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	272, 306
BseRI	GAGGAG	2 cut(s)	75, 394
BseXI	GCAGC	2 cut(s)	335, 743
Bsh1236I	CGCG	3 cut(s)	81, 96, 115
Bsh1285I	CGRYCG	2 cut(s)	79, 113
BshFI	GGCC	2 cut(s)	208, 444
BsiEI	CGRYCG	2 cut(s)	79, 113
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	215, 557, 722
BsmAI	GTCTC	3 cut(s)	12, 422, 552
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	208, 444
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
Bsp19I	CCATGG	2 cut(s)	165, 469
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	7 cut(s)	220, 252, 277, 305, 326, 498, 754
BspANI	GGCC	2 cut(s)	208, 444
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	3 cut(s)	81, 96, 115
BspHI	TCATGA	2 cut(s)	396, 564
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	272, 306
BssECI	CCNNGG	2 cut(s)	165, 469
BssMI	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
BssT1I	CCWWGG	2 cut(s)	165, 469
Bst4CI	ACNGT	2 cut(s)	690, 762
Bst6I	CTCTTC	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	258, 616
BstDSI	CCRYGG	2 cut(s)	165, 469
BstF5I	GGATG	4 cut(s)	251, 300, 397, 580
BstFNI	CGCG	3 cut(s)	81, 96, 115
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	4 cut(s)	67, 83, 289, 310
BstKTI	GATC	6 cut(s)	73, 100, 113, 161, 175, 769
BstMAI	GTCTC	3 cut(s)	12, 422, 552
BstMBI	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
BstMCI	CGRYCG	2 cut(s)	79, 113
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 205, 902
BstNSI	RCATGY	1 cut(s)	905
BstUI	CGCG	3 cut(s)	81, 96, 115
BstV1I	GCAGC	2 cut(s)	335, 743
BstV2I	GAAGAC	2 cut(s)	227, 357
BstX2I	RGATCY	2 cut(s)	158, 172
BstYI	RGATCY	2 cut(s)	158, 172
BsuRI	GGCC	2 cut(s)	208, 444
BtgI	CCRYGG	2 cut(s)	165, 469
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	4 cut(s)	251, 300, 397, 580
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	316
CciI	TCATGA	2 cut(s)	396, 564
CfoI	GCGC	4 cut(s)	67, 83, 289, 310
Cfr13I	GGNCC	2 cut(s)	473, 751
CseI	GACGC	2 cut(s)	322, 723
Csp6I	GTAC	2 cut(s)	154, 763
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	6 cut(s)	166, 397, 470, 565, 636, 902
CviJI	RGCY	7 cut(s)	184, 195, 208, 444, 523, 561, 598
CviKI_1	RGCY	7 cut(s)	184, 195, 208, 444, 523, 561, 598
CviQI	GTAC	2 cut(s)	154, 763
DdeI	CTNAG	2 cut(s)	258, 616
DpnI	GATC	6 cut(s)	72, 99, 112, 160, 174, 768
DpnII	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
DraI	TTTAAA	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EciI	GGCGGA	3 cut(s)	267, 292, 513
Eco130I	CCWWGG	2 cut(s)	165, 469
Eco47I	GGWCC	2 cut(s)	473, 751
EcoRI	GAATTC	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	165, 469
EcoT22I	ATGCAT	1 cut(s)	535
ErhI	CCWWGG	2 cut(s)	165, 469
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	6 cut(s)	169, 400, 473, 568, 639, 905
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	6 cut(s)	165, 396, 469, 564, 635, 901
Fnu4HI	GCNGC	3 cut(s)	306, 324, 732
FokI	GGATG	4 cut(s)	258, 307, 404, 567
Fsp4HI	GCNGC	3 cut(s)	306, 324, 732
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	4 cut(s)	66, 82, 288, 309
GluI	GCNGC	3 cut(s)	306, 324, 732
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	208, 444
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	2 cut(s)	322, 723
HhaI	GCGC	4 cut(s)	67, 83, 289, 310
Hin1II	CATG	6 cut(s)	169, 400, 473, 568, 639, 905
Hin6I	GCGC	4 cut(s)	65, 81, 287, 308
HinP1I	GCGC	4 cut(s)	65, 81, 287, 308
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	4 cut(s)	51, 240, 640, 875
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	37, 737, 857
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	5 cut(s)	245, 261, 585, 712, 771
Hpy188III	TCNNGA	5 cut(s)	95, 146, 397, 527, 565
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	220, 488, 561, 689, 742, 799, 860
HpyCH4III	ACNGT	2 cut(s)	690, 762
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	533, 731, 800, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 205, 902
HpyF3I	CTNAG	2 cut(s)	258, 616
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	6 cut(s)	169, 400, 473, 568, 639, 905
HspAI	GCGC	4 cut(s)	65, 81, 287, 308
Kzo9I	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
LmnI	GCTCC	3 cut(s)	88, 520, 808
LpnPI	CCDG	9 cut(s)	61, 159, 181, 253, 287, 540, 588, 843, 882
Lsp1109I	GCAGC	2 cut(s)	335, 743
LweI	GCATC	3 cut(s)	28, 520, 718
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	4 cut(s)	43, 297, 413, 881
MalI	GATC	6 cut(s)	72, 99, 112, 160, 174, 768
MboI	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
MboII	GAAGA	5 cut(s)	225, 227, 357, 845, 848
MflI	RGATCY	2 cut(s)	158, 172
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	5 cut(s)	338, 353, 464, 510, 624
MlyI	GAGTC	2 cut(s)	60, 649
MnlI	CCTC	8 cut(s)	96, 136, 194, 209, 267, 322, 372, 455
Mph1103I	ATGCAT	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	874
MseI	TTAA	3 cut(s)	351, 627, 659
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	3 cut(s)	81, 96, 115
MwoI	GCNNNNNNNGC	3 cut(s)	64, 205, 902
NcoI	CCATGG	2 cut(s)	165, 469
NdeII	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
NlaIII	CATG	6 cut(s)	169, 400, 473, 568, 639, 905
NmuCI	GTSAC	3 cut(s)	43, 413, 881
NruI	TCGCGA	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	1 cut(s)	905
PagI	TCATGA	2 cut(s)	396, 564
PdmI	GAANNNNTTC	1 cut(s)	874
PfeI	GAWTC	2 cut(s)	240, 875
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	3 cut(s)	307, 325, 733
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	2 cut(s)	59, 648
PpsI	GAGTC	2 cut(s)	59, 648
PshBI	ATTAAT	1 cut(s)	627
Psp1406I	AACGTT	1 cut(s)	588
PspPI	GGNCC	2 cut(s)	473, 751
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	158, 172
PvuI	CGATCG	1 cut(s)	113
RruI	TCGCGA	1 cut(s)	96
RsaI	GTAC	2 cut(s)	155, 764
RsaNI	GTAC	2 cut(s)	154, 763
SaqAI	TTAA	3 cut(s)	351, 627, 659
SatI	GCNGC	3 cut(s)	306, 324, 732
Sau3AI	GATC	6 cut(s)	70, 97, 110, 158, 172, 766
Sau96I	GGNCC	2 cut(s)	473, 751
SchI	GAGTC	2 cut(s)	60, 649
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	128, 333, 525, 591, 600, 657
SfaNI	GCATC	3 cut(s)	28, 520, 718
SinI	GGWCC	2 cut(s)	473, 751
Sse9I	AATT	5 cut(s)	338, 353, 464, 510, 624
SsiI	CCGC	7 cut(s)	220, 252, 277, 305, 326, 498, 754
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	165, 469
TaaI	ACNGT	2 cut(s)	690, 762
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	54, 238, 878
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	338, 353, 464, 510, 624
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	240, 875
Tru1I	TTAA	3 cut(s)	351, 627, 659
Tru9I	TTAA	3 cut(s)	351, 627, 659
TseFI	GTSAC	3 cut(s)	43, 413, 881
TseI	GCWGC	2 cut(s)	323, 731
Tsp45I	GTSAC	3 cut(s)	43, 413, 881
TspDTI	ATGAA	7 cut(s)	413, 507, 553, 569, 581, 761, 879
TspGWI	ACGGA	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	473, 751
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	4 cut(s)	338, 353, 464, 510
XceI	RCATGY	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	874
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.