Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010984

Physical Location & Seq

Genomic Coordinates Forward (+)

28709185 .. 28714191

Gene Structure 5007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCCGTTCGTGCAGGTCTTGACATCACGATTTTAGGAAGCAATGACTTTTATTCGTATCGGAATTACATTGAAGCCCATGGTCTGCCTTTGACTCCAGATGCATTGGCTGCACTTCCTGCCTTTGCATCTATTACCTTCAATGCCGAGGAATCAAATGGAGAAAATTGTAAGCCTGAAGTTGCAAAAACTGGACTGGGTTCTTCTGCGGCAATGACAACTGCTGTTGTTGCTGCTTTGCTTCATTACCTGGGGGTTGTTAATCTTGCCTCCGTGCTTCATCAAGAAAAGGACACCACAGATCTTGATACAGTGCATGTGATAGCTCAAACTGCTCACTGTCTTGCACAGGGAAAAGTGGGCAGTGGTTTTGATGTTAGCTCTGCAGTTTATGGAAGTCACCGTTATGTCCGCTTTTCACCAGAAGTGATTTCTTCTGCACAGGTTGCAGTGATGGGAACTCCACTACCTGAAGTCGTTCTTGAAATCCTAAAAGGAAAGTGGGACCATGAGAGGACTAAGTTCTGTTTGCCACCATTGATGACTCTTTTACTCGGAGAACCAGGGACTGGAGGATCATCCACTCCATCAATGGTAGGTGCTGTGAAAAAGTGGCAGAAGTCTGACCCTGAGAAATCTTTGGACACGTTGAGAAAGTTGTCAGAGGCAAATTCAGCCCTTGAAACACAACTCAATACTCTAAGCAAATTGGCGGAAAAACACTGGGATGATTATAAATGCGTGATAGACAGCTGCAGCATTCTGAAAACAGACAAGTGGATAGAGCAAGTCAGTAATCCAAACCAACAAGTAATAGTTAAAGCATTATTAGGAGCAAGAGATGCTATGCTTGGGATCAGGTTTCATATGCATCAGATGGGTGAGGCTGCAGGTGTTCCGATAGAGCCAGAATCACAAACAAAGCTTTTGGATGCTACTATGAGTATGGAAGGAGTTTTGCTGGCCGGAGTTCCTGGAGCAGGTGGATTTGATGCAGTATTTGCAGTTACCTTAGGGGATTCTGGAAGCCACGTGACAAAATCATGGAGCTCATTCAATGTTTTGGCCTTGTTAGTTAGAGAAGATCCTCATGGTGTTTCTTTAGAGTCTGCTGATCCACGAACGAAGGAAATTACCTCATCCATTTCCTCGGTTCATATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

41.41

Weight (kDa)

5.45

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	63 - 132	7e-06	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31910 AT1G31910
fragaria_vesca	FvH4_5g23300
malus_domestica	MD09G1247700.v1.1 MD17G1240600.v1.1
prunus_persica	Prupe.5G026300_v2.0.a1 Prupe.5G026300_v2.0.a1
pyrus_communis	pycom09g16520 pycom17g24390
rosa_chinensis	RchiOBHm_Chr7g0212251
rosa_laevigata	RLG00000002903
rosa_multiflora	Rmu_sc0001911.1_g000042 Rmu_sc0002882.1_g000066
rosa_roxburghii	Rroxscaffold_3G00246980
rosa_rugosa	Rorug07G0132800
rosa_samantha	Rh7AG265600 Rh7BG259800 Rh7CG282400 Rh7DG272500
rosa_wichuraiana	Rw7G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AarI	CACCTGC	2 cut(s)	881, 971
Acc36I	ACCTGC	3 cut(s)	5, 881, 971
AccB7I	CCANNNNNTGG	1 cut(s)	569
AciI	CCGC	3 cut(s)	209, 412, 713
AclWI	GGATC	4 cut(s)	583, 863, 1079, 1109
AcoI	YGGCCR	2 cut(s)	3, 963
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	2 cut(s)	198, 492
AcvI	CACGTG	1 cut(s)	1033
AfiI	CCNNNNNNNGG	2 cut(s)	569, 980
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	5 cut(s)	74, 142, 485, 683, 1057
AjnI	CCWGG	3 cut(s)	249, 562, 973
AluBI	AGCT	5 cut(s)	326, 381, 753, 925, 1050
AluI	AGCT	5 cut(s)	326, 381, 753, 925, 1050
Alw21I	GWGCWC	1 cut(s)	1052
AlwI	GGATC	4 cut(s)	583, 863, 1079, 1109
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	3 cut(s)	3, 963, 1065
ApeKI	GCWGC	5 cut(s)	110, 233, 753, 756, 887
ApoI	RAATTY	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	3 cut(s)	392, 411, 893
AvaII	GGWCC	1 cut(s)	505
AxyI	CCTNAGG	1 cut(s)	1012
BanII	GRGCYC	1 cut(s)	1052
BbrPI	CACGTG	1 cut(s)	1033
Bbv12I	GWGCWC	1 cut(s)	1052
BbvI	GCAGC	5 cut(s)	97, 220, 740, 768, 874
BccI	CCATC	3 cut(s)	448, 595, 871
BciT130I	CCWGG	3 cut(s)	251, 564, 975
BfmI	CTRYAG	3 cut(s)	384, 754, 888
BfuAI	ACCTGC	3 cut(s)	5, 881, 971
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	6 cut(s)	111, 210, 234, 754, 757, 888
BlsI	GCNGC	6 cut(s)	112, 211, 235, 755, 758, 889
Bme1390I	CCNGG	3 cut(s)	251, 564, 975
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	3 cut(s)	251, 564, 975
BmrI	ACTGGG	2 cut(s)	206, 733
BmsI	GCATC	6 cut(s)	91, 137, 832, 880, 922, 982
BmuI	ACTGGG	2 cut(s)	206, 733
BpmI	CTGGAG	3 cut(s)	81, 591, 996
BsaAI	YACGTR	1 cut(s)	1033
BsaJI	CCNNGG	5 cut(s)	79, 147, 250, 563, 1149
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 980
Bse1I	ACTGG	4 cut(s)	196, 201, 574, 728
Bse21I	CCTNAGG	1 cut(s)	1012
Bse3DI	GCAATG	2 cut(s)	49, 219
BseBI	CCWGG	3 cut(s)	251, 564, 975
BseDI	CCNNGG	5 cut(s)	79, 147, 250, 563, 1149
BseGI	GGATG	4 cut(s)	578, 733, 937, 1139
BseLI	CCNNNNNNNGG	2 cut(s)	569, 980
BseMI	GCAATG	2 cut(s)	49, 219
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	4 cut(s)	196, 201, 574, 728
BseXI	GCAGC	5 cut(s)	97, 220, 740, 768, 874
BsgI	GTGCAG	3 cut(s)	33, 96, 423
BshFI	GGCC	3 cut(s)	5, 965, 1067
BsiHKAI	GWGCWC	1 cut(s)	1052
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	2 cut(s)	518, 580
BslI	CCNNNNNNNGG	2 cut(s)	569, 980
BsmFI	GGGAC	2 cut(s)	518, 580
BsmI	GAATGC	1 cut(s)	759
BsnI	GGCC	3 cut(s)	5, 965, 1067
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp143I	GATC	5 cut(s)	301, 575, 855, 1084, 1114
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	3 cut(s)	209, 412, 713
BspANI	GGCC	3 cut(s)	5, 965, 1067
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	506
BspMAI	CTGCAG	3 cut(s)	388, 758, 892
BspMI	ACCTGC	3 cut(s)	5, 881, 971
BspPI	GGATC	4 cut(s)	583, 863, 1079, 1109
BsrDI	GCAATG	2 cut(s)	49, 219
BsrI	ACTGG	4 cut(s)	196, 201, 574, 728
BssECI	CCNNGG	5 cut(s)	79, 147, 250, 563, 1149
BssMI	GATC	5 cut(s)	301, 575, 855, 1084, 1114
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	3 cut(s)	251, 564, 975
Bst4CI	ACNGT	3 cut(s)	313, 341, 404
BstAPI	GCANNNNNTGC	5 cut(s)	110, 119, 446, 842, 1001
BstBAI	YACGTR	1 cut(s)	1033
BstC8I	GCNNGC	1 cut(s)	963
BstDEI	CTNAG	4 cut(s)	519, 630, 701, 1012
BstDSI	CCRYGG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	978
BstF5I	GGATG	4 cut(s)	578, 733, 937, 1139
BstKTI	GATC	5 cut(s)	304, 578, 858, 1087, 1117
BstMBI	GATC	5 cut(s)	301, 575, 855, 1084, 1114
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 110, 119, 230, 332, 446, 674, 842, 1001
BstNI	CCWGG	3 cut(s)	251, 564, 975
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	249, 562, 973
BstSFI	CTRYAG	3 cut(s)	384, 754, 888
BstV1I	GCAGC	5 cut(s)	97, 220, 740, 768, 874
BstX2I	RGATCY	2 cut(s)	301, 1084
BstYI	RGATCY	2 cut(s)	301, 1084
Bsu36I	CCTNAGG	1 cut(s)	1012
BsuRI	GGCC	3 cut(s)	5, 965, 1067
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	578, 733, 937, 1139
BtsI	GCAGTG	2 cut(s)	370, 456
BtsIMutI	CAGTG	5 cut(s)	318, 337, 370, 456, 721
BveI	ACCTGC	3 cut(s)	5, 881, 971
Cac8I	GCNNGC	1 cut(s)	963
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	505
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	5 cut(s)	80, 317, 509, 1044, 1091
DdeI	CTNAG	4 cut(s)	519, 630, 701, 1012
DpnI	GATC	5 cut(s)	303, 577, 857, 1086, 1116
DpnII	GATC	5 cut(s)	301, 575, 855, 1084, 1114
EaeI	YGGCCR	2 cut(s)	3, 963
EciI	GGCGGA	1 cut(s)	728
Ecl136II	GAGCTC	1 cut(s)	1050
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	1052
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	1050
Eco57I	CTGAAG	2 cut(s)	198, 492
Eco72I	CACGTG	1 cut(s)	1033
Eco81I	CCTNAGG	1 cut(s)	1012
EcoICRI	GAGCTC	1 cut(s)	1050
EcoNI	CCTNNNNNAGG	1 cut(s)	978
EcoRII	CCWGG	3 cut(s)	249, 562, 973
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	2 cut(s)	106, 873
EcoT38I	GRGCYC	1 cut(s)	1052
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	5 cut(s)	83, 320, 512, 1047, 1094
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	2 cut(s)	518, 580
FatI	CATG	5 cut(s)	79, 316, 508, 1043, 1090
FauNDI	CATATG	1 cut(s)	867
Fnu4HI	GCNGC	6 cut(s)	111, 210, 234, 754, 757, 888
FokI	GGATG	4 cut(s)	565, 740, 944, 1126
FriOI	GRGCYC	1 cut(s)	1052
Fsp4HI	GCNGC	6 cut(s)	111, 210, 234, 754, 757, 888
GluI	GCNGC	6 cut(s)	111, 210, 234, 754, 757, 888
GsuI	CTGGAG	3 cut(s)	81, 591, 996
HaeIII	GGCC	3 cut(s)	5, 965, 1067
HapII	CCGG	1 cut(s)	966
Hin1II	CATG	5 cut(s)	83, 320, 512, 1047, 1094
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	6 cut(s)	94, 152, 544, 911, 1019, 1106
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	3 cut(s)	392, 411, 893
Hpy188I	TCNGA	7 cut(s)	63, 557, 625, 664, 765, 876, 900
Hpy188III	TCNNGA	7 cut(s)	20, 28, 98, 284, 305, 482, 1023
HpyAV	CCTTC	3 cut(s)	148, 944, 1120
HpyCH4III	ACNGT	3 cut(s)	313, 341, 404
HpyCH4IV	ACGT	2 cut(s)	647, 1032
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 110, 119, 230, 332, 446, 674, 842, 1001
HpyF3I	CTNAG	4 cut(s)	519, 630, 701, 1012
HpySE526I	ACGT	2 cut(s)	647, 1032
Hsp92II	CATG	5 cut(s)	83, 320, 512, 1047, 1094
Kzo9I	GATC	5 cut(s)	301, 575, 855, 1084, 1114
LmnI	GCTCC	3 cut(s)	833, 977, 1047
Lsp1109I	GCAGC	5 cut(s)	97, 220, 740, 768, 874
LweI	GCATC	6 cut(s)	91, 137, 832, 880, 922, 982
MaeII	ACGT	2 cut(s)	647, 1032
MaeIII	GTNAC	3 cut(s)	398, 1006, 1033
MalI	GATC	5 cut(s)	303, 577, 857, 1086, 1116
MboI	GATC	5 cut(s)	301, 575, 855, 1084, 1114
MboII	GAAGA	3 cut(s)	195, 426, 1094
MflI	RGATCY	2 cut(s)	301, 1084
MhlI	GDGCHC	1 cut(s)	1052
MluCI	AATT	5 cut(s)	64, 166, 670, 707, 1131
MlyI	GAGTC	3 cut(s)	88, 538, 1115
MnlI	CCTC	9 cut(s)	142, 280, 507, 566, 658, 877, 1098, 1147, 1159
Mph1103I	ATGCAT	2 cut(s)	106, 873
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	3 cut(s)	261, 819, 1165
MslI	CAYNNNNRTG	2 cut(s)	405, 726
MspA1I	CMGCKG	1 cut(s)	753
MspI	CCGG	1 cut(s)	966
MspR9I	CCNGG	3 cut(s)	251, 564, 975
Mva1269I	GAATGC	1 cut(s)	759
MvaI	CCWGG	3 cut(s)	251, 564, 975
MwoI	GCNNNNNNNGC	9 cut(s)	11, 110, 119, 230, 332, 446, 674, 842, 1001
NcoI	CCATGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	5 cut(s)	301, 575, 855, 1084, 1114
NlaIII	CATG	5 cut(s)	83, 320, 512, 1047, 1094
NlaIV	GGNNCC	1 cut(s)	506
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	398, 1033
NsiI	ATGCAT	2 cut(s)	106, 873
NspI	RCATGY	1 cut(s)	320
PaqCI	CACCTGC	2 cut(s)	881, 971
PctI	GAATGC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	152, 911, 1019
PflMI	CCANNNNNTGG	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	973
PkrI	GCNGC	6 cut(s)	112, 211, 235, 755, 758, 889
PleI	GAGTC	3 cut(s)	88, 538, 1114
PmaCI	CACGTG	1 cut(s)	1033
PmlI	CACGTG	1 cut(s)	1033
PpsI	GAGTC	3 cut(s)	88, 538, 1114
Ppu21I	YACGTR	1 cut(s)	1033
PsiI	TTATAA	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	1052
Psp6I	CCWGG	3 cut(s)	249, 562, 973
PspCI	CACGTG	1 cut(s)	1033
PspGI	CCWGG	3 cut(s)	249, 562, 973
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	3 cut(s)	388, 758, 892
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	301, 1084
PvuII	CAGCTG	1 cut(s)	753
RseI	CAYNNNNRTG	2 cut(s)	405, 726
SacI	GAGCTC	1 cut(s)	1052
SaqAI	TTAA	3 cut(s)	261, 819, 1165
SatI	GCNGC	6 cut(s)	111, 210, 234, 754, 757, 888
Sau3AI	GATC	5 cut(s)	301, 575, 855, 1084, 1114
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	3 cut(s)	88, 538, 1115
ScrFI	CCNGG	3 cut(s)	251, 564, 975
SduI	GDGCHC	1 cut(s)	1052
SfaNI	GCATC	6 cut(s)	91, 137, 832, 880, 922, 982
SfcI	CTRYAG	3 cut(s)	384, 754, 888
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	405, 726
Sse9I	AATT	5 cut(s)	64, 166, 670, 707, 1131
SsiI	CCGC	3 cut(s)	209, 412, 713
SstI	GAGCTC	1 cut(s)	1052
StyD4I	CCNGG	3 cut(s)	249, 562, 973
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	313, 341, 404
TaiI	ACGT	2 cut(s)	650, 1035
TasI	AATT	5 cut(s)	64, 166, 670, 707, 1131
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	152, 911, 1019
Tru1I	TTAA	3 cut(s)	261, 819, 1165
Tru9I	TTAA	3 cut(s)	261, 819, 1165
TscAI	CASTG	5 cut(s)	318, 344, 370, 456, 728
TseFI	GTSAC	2 cut(s)	398, 1033
TseI	GCWGC	5 cut(s)	110, 233, 753, 756, 887
Tsp45I	GTSAC	2 cut(s)	398, 1033
TspDTI	ATGAA	4 cut(s)	233, 269, 854, 1145
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	5 cut(s)	318, 344, 370, 456, 728
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	978
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	2 cut(s)	106, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.