Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010984

Physical Location & Seq

Genomic Coordinates Forward (+)

23658170 .. 23663438

Gene Structure 5269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCCGTAGTTGCTTCAGCTCCAGGGAAGGTTCTGTTGACCGGAGGCTACCTAATTCTCGACAGACCCAATGCGGGACTCGTGCTCAGCACAAACGCTCGCTTCTTCGCCATTGTCAAACCGCTCTACGATCACCTCAAGCCTGACAGTTGGGCTTGGAAATGGACAGATGTGAAACTGACCTCTCCTCAGCTCTCTAGAGAAAGCATCTACAAATTGTCACTGAAAGATTTAACTCTTGAAAACGTTTCTTCAGGTGACTCGAGGAACCCTTTTGTGGAGCAAGCAGTGCAATACTGTGTGGCTGCTGCTCGAGCAACACTTGACAAGGACAAGAAGGATTCGTTAGAGAAATTACTATTGCAAGGTCTTGACATCACGATTTTAGGAAGCAATGACTTTTATTCGTATCGGAATTACATTGAAGCCCGTGGTCTGCCTTTGACTCCAGATGCATTGGCTGCACTTCCTGCCTTTGCATCTATTACCTTCAATGCCGAGGAATCAAATGGAGAAAATTGTAAGCCTGAAGTTGCAAAAACTGGACTGGGTTCTTCTGCGGCAATGACAACTGCTGTTGTTGCTGCTTTGCTTCATTACCTGGGGGTTGTTAATCTTGCCTCCGTGCTTCATCAAGAAAAGGACACCACAGATCTTGATACAGTGCATGTGATAGCTCAAACTGCTCACTGTCTTGCACAGGGAAAAGTGGGCAGTGGTTTTGATGTTAGCTCTGCAGTTTATGGAAGTCACCGTTATGTCCGCTTTTCACCAGAAGTGATTTCTTCTGCACAGGTTGCAGTGATGGGAACTCCACTACCTGAAGTCGTTCTTGAAATCCTAAAAGGAAAGTGGGACCATGAGAGGACTAAGTTCTGTTTGCCACCATTGATGACTCTTTTACTCGGAGAACCAGGGACTGGAGGATCATCCACTCCATCAATGGTAGGTGCTGTGAAAAAGTGGCAGAAGTCTGACCCTGAGAAATCTTTGGACACGTTGAGAAAGTTGTCAGAGGCAAATTCAGCCCTTGAAACACAACTCAATACTCTAAGCAAATTGGCGGAAAAACACTGGGATGACTATAAATGCATGATAGACAGCTGCAGCATTCTGAAAACAGACAAGTGGATAGAGCAAGTCGGTAATCCAAACCAACAAGCAATAGTTAAAGCATTATTAGGAGCAAGAGATGCTATGCTTGGGATCAGGTTTCATATGCATCAGATGGGTGAGGCTGCAGGTGTTCCGGTATGTCTTTTCTTTAAGTGGATTCTTGTATGTTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

430

Amino Acids

46.8

Weight (kDa)

6.56

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	180 - 249	5.6e-06	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31910 AT1G31910
fragaria_vesca	FvH4_5g23300
malus_domestica	MD09G1247700.v1.1 MD17G1240600.v1.1
prunus_persica	Prupe.5G026300_v2.0.a1 Prupe.5G026300_v2.0.a1
pyrus_communis	pycom09g16520 pycom17g24390
rosa_chinensis	RchiOBHm_Chr7g0212251
rosa_laevigata	RLG00000002903
rosa_multiflora	Rmu_sc0001911.1_g000042 Rmu_sc0002882.1_g000066
rosa_roxburghii	Rroxscaffold_3G00246980
rosa_rugosa	Rorug07G0132800
rosa_samantha	Rh7AG265600 Rh7BG259800 Rh7CG282400 Rh7DG272500
rosa_wichuraiana	Rw7G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1232
Acc36I	ACCTGC	1 cut(s)	1232
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	5 cut(s)	74, 122, 560, 763, 1064
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	2 cut(s)	934, 1214
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	3 cut(s)	237, 549, 843
AfiI	CCNNNNNNNGG	3 cut(s)	74, 277, 920
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	5 cut(s)	242, 425, 493, 836, 1034
AjnI	CCWGG	3 cut(s)	22, 600, 913
AluBI	AGCT	5 cut(s)	20, 193, 677, 732, 1104
AluI	AGCT	5 cut(s)	20, 193, 677, 732, 1104
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	2 cut(s)	934, 1214
AlwNI	CAGNNNCTG	1 cut(s)	920
Ama87I	CYCGRG	2 cut(s)	262, 312
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	7 cut(s)	305, 308, 461, 584, 1104, 1107, 1238
ApoI	RAATTY	1 cut(s)	1021
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	856
AsuHPI	GGTGA	5 cut(s)	125, 269, 743, 762, 1244
AvaI	CYCGRG	2 cut(s)	262, 312
AvaII	GGWCC	1 cut(s)	856
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	7 cut(s)	292, 295, 448, 571, 1091, 1119, 1225
BccI	CCATC	3 cut(s)	799, 946, 1222
BciT130I	CCWGG	3 cut(s)	24, 602, 915
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	4 cut(s)	735, 1105, 1239, 1289
BfuAI	ACCTGC	1 cut(s)	1232
BglII	AGATCT	1 cut(s)	652
BisI	GCNGC	8 cut(s)	306, 309, 462, 561, 585, 1105, 1108, 1239
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	8 cut(s)	307, 310, 463, 562, 586, 1106, 1109, 1240
Bme1390I	CCNGG	3 cut(s)	24, 602, 915
Bme18I	GGWCC	1 cut(s)	856
BmeT110I	CYCGRG	2 cut(s)	262, 312
BmgT120I	GGNCC	1 cut(s)	856
BmiI	GGNNCC	2 cut(s)	269, 857
BmrFI	CCNGG	3 cut(s)	24, 602, 915
BmrI	ACTGGG	2 cut(s)	557, 1084
BmsI	GCATC	5 cut(s)	216, 442, 488, 1183, 1231
BmuI	ACTGGG	2 cut(s)	557, 1084
BpmI	CTGGAG	3 cut(s)	6, 432, 942
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	5 cut(s)	23, 430, 498, 601, 914
BsaWI	WCCGGW	2 cut(s)	41, 1249
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 277, 920
Bse1I	ACTGG	4 cut(s)	547, 552, 925, 1079
Bse3DI	GCAATG	2 cut(s)	400, 570
BseBI	CCWGG	3 cut(s)	24, 602, 915
BseDI	CCNNGG	5 cut(s)	23, 430, 498, 601, 914
BseGI	GGATG	2 cut(s)	929, 1084
BseLI	CCNNNNNNNGG	3 cut(s)	74, 277, 920
BseMI	GCAATG	2 cut(s)	400, 570
BseMII	CTCAG	3 cut(s)	100, 203, 972
BseNI	ACTGG	4 cut(s)	547, 552, 925, 1079
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	7 cut(s)	292, 295, 448, 571, 1091, 1119, 1225
BsgI	GTGCAG	2 cut(s)	447, 774
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	262, 312
BsiSI	CCGG	2 cut(s)	42, 1250
BslFI	GGGAC	3 cut(s)	90, 869, 931
BslI	CCNNNNNNNGG	3 cut(s)	74, 277, 920
BsmFI	GGGAC	3 cut(s)	90, 869, 931
BsmI	GAATGC	1 cut(s)	1110
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	262, 312
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	130, 652, 926, 1206
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	5 cut(s)	74, 122, 560, 763, 1064
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	99, 202, 973
BspLI	GGNNCC	2 cut(s)	269, 857
BspMAI	CTGCAG	3 cut(s)	739, 1109, 1243
BspMI	ACCTGC	1 cut(s)	1232
BspPI	GGATC	2 cut(s)	934, 1214
BsrBI	CCGCTC	1 cut(s)	124
BsrDI	GCAATG	2 cut(s)	400, 570
BsrI	ACTGG	4 cut(s)	547, 552, 925, 1079
BssECI	CCNNGG	5 cut(s)	23, 430, 498, 601, 914
BssMI	GATC	4 cut(s)	130, 652, 926, 1206
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	24, 602, 915
Bst4CI	ACNGT	5 cut(s)	149, 299, 664, 692, 755
BstAPI	GCANNNNNTGC	5 cut(s)	289, 461, 470, 797, 1193
BstC8I	GCNNGC	2 cut(s)	100, 285
BstDEI	CTNAG	5 cut(s)	86, 189, 870, 981, 1052
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	929, 1084
BstKTI	GATC	4 cut(s)	133, 655, 929, 1209
BstMBI	GATC	4 cut(s)	130, 652, 926, 1206
BstNI	CCWGG	3 cut(s)	24, 602, 915
BstNSI	RCATGY	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	22, 600, 913
BstSFI	CTRYAG	4 cut(s)	735, 1105, 1239, 1289
BstV1I	GCAGC	7 cut(s)	292, 295, 448, 571, 1091, 1119, 1225
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	929, 1084
BtsI	GCAGTG	3 cut(s)	294, 721, 807
BtsIMutI	CAGTG	7 cut(s)	221, 294, 669, 688, 721, 807, 1072
BveI	ACCTGC	1 cut(s)	1232
Cac8I	GCNNGC	2 cut(s)	100, 285
CaiI	CAGNNNCTG	1 cut(s)	920
Cfr13I	GGNCC	1 cut(s)	856
CspCI	CAANNNNNGTGG	2 cut(s)	637, 672
CviAII	CATG	3 cut(s)	668, 860, 1093
DdeI	CTNAG	5 cut(s)	86, 189, 870, 981, 1052
DpnI	GATC	4 cut(s)	132, 654, 928, 1208
DpnII	GATC	4 cut(s)	130, 652, 926, 1206
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	1079
Eco47I	GGWCC	1 cut(s)	856
Eco57I	CTGAAG	3 cut(s)	237, 549, 843
Eco88I	CYCGRG	2 cut(s)	262, 312
EcoRII	CCWGG	3 cut(s)	22, 600, 913
EcoT22I	ATGCAT	3 cut(s)	457, 1094, 1224
FaeI	CATG	3 cut(s)	671, 863, 1096
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	3 cut(s)	90, 869, 931
FatI	CATG	3 cut(s)	667, 859, 1092
FauI	CCCGC	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	1218
Fnu4HI	GCNGC	8 cut(s)	306, 309, 462, 561, 585, 1105, 1108, 1239
FokI	GGATG	2 cut(s)	916, 1091
Fsp4HI	GCNGC	8 cut(s)	306, 309, 462, 561, 585, 1105, 1108, 1239
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	8 cut(s)	306, 309, 462, 561, 585, 1105, 1108, 1239
GsuI	CTGGAG	3 cut(s)	6, 432, 942
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	42, 1250
Hin1II	CATG	3 cut(s)	671, 863, 1096
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	7 cut(s)	78, 260, 341, 445, 503, 895, 1273
HpaII	CCGG	2 cut(s)	42, 1250
HphI	GGTGA	5 cut(s)	125, 269, 743, 762, 1244
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	6 cut(s)	414, 908, 976, 1015, 1116, 1227
Hpy188III	TCNNGA	9 cut(s)	59, 198, 239, 371, 379, 449, 635, 656, 833
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	22, 331, 499
HpyCH4III	ACNGT	5 cut(s)	149, 299, 664, 692, 755
HpyCH4IV	ACGT	2 cut(s)	246, 998
HpyF3I	CTNAG	5 cut(s)	86, 189, 870, 981, 1052
HpySE526I	ACGT	2 cut(s)	246, 998
Hsp92II	CATG	3 cut(s)	671, 863, 1096
Kzo9I	GATC	4 cut(s)	130, 652, 926, 1206
LmnI	GCTCC	3 cut(s)	25, 280, 1184
Lsp1109I	GCAGC	7 cut(s)	292, 295, 448, 571, 1091, 1119, 1225
LweI	GCATC	5 cut(s)	216, 442, 488, 1183, 1231
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	246, 998
MaeIII	GTNAC	3 cut(s)	219, 257, 749
MalI	GATC	4 cut(s)	132, 654, 928, 1208
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	4 cut(s)	130, 652, 926, 1206
MboII	GAAGA	4 cut(s)	97, 243, 546, 777
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	7 cut(s)	54, 215, 353, 415, 517, 1021, 1058
MlyI	GAGTC	4 cut(s)	72, 254, 439, 889
Mph1103I	ATGCAT	3 cut(s)	457, 1094, 1224
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	4 cut(s)	233, 612, 1170, 1266
MslI	CAYNNNNRTG	2 cut(s)	756, 1077
MspA1I	CMGCKG	1 cut(s)	1104
MspI	CCGG	2 cut(s)	42, 1250
MspR9I	CCNGG	3 cut(s)	24, 602, 915
Mva1269I	GAATGC	1 cut(s)	1110
MvaI	CCWGG	3 cut(s)	24, 602, 915
NdeI	CATATG	1 cut(s)	1218
NdeII	GATC	4 cut(s)	130, 652, 926, 1206
NlaIII	CATG	3 cut(s)	671, 863, 1096
NlaIV	GGNNCC	2 cut(s)	269, 857
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	3 cut(s)	219, 257, 749
NsiI	ATGCAT	3 cut(s)	457, 1094, 1224
NspI	RCATGY	1 cut(s)	671
PaeR7I	CTCGAG	2 cut(s)	262, 312
PaqCI	CACCTGC	1 cut(s)	1232
PctI	GAATGC	1 cut(s)	1110
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	3 cut(s)	341, 503, 1273
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	8 cut(s)	307, 310, 463, 562, 586, 1106, 1109, 1240
PleI	GAGTC	4 cut(s)	72, 254, 439, 889
PpsI	GAGTC	4 cut(s)	72, 254, 439, 889
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	22, 600, 913
PspGI	CCWGG	3 cut(s)	22, 600, 913
PspN4I	GGNNCC	2 cut(s)	269, 857
PspPI	GGNCC	1 cut(s)	856
PspXI	VCTCGAGB	2 cut(s)	262, 312
PstI	CTGCAG	3 cut(s)	739, 1109, 1243
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	1104
RseI	CAYNNNNRTG	2 cut(s)	756, 1077
SaqAI	TTAA	4 cut(s)	233, 612, 1170, 1266
SatI	GCNGC	8 cut(s)	306, 309, 462, 561, 585, 1105, 1108, 1239
Sau3AI	GATC	4 cut(s)	130, 652, 926, 1206
Sau96I	GGNCC	1 cut(s)	856
SchI	GAGTC	4 cut(s)	72, 254, 439, 889
ScrFI	CCNGG	3 cut(s)	24, 602, 915
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	5 cut(s)	216, 442, 488, 1183, 1231
SfcI	CTRYAG	4 cut(s)	735, 1105, 1239, 1289
Sfr274I	CTCGAG	2 cut(s)	262, 312
SinI	GGWCC	1 cut(s)	856
SlaI	CTCGAG	2 cut(s)	262, 312
SmiMI	CAYNNNNRTG	2 cut(s)	756, 1077
SmlI	CTYRAG	3 cut(s)	137, 262, 312
SmoI	CTYRAG	3 cut(s)	137, 262, 312
Sse9I	AATT	7 cut(s)	54, 215, 353, 415, 517, 1021, 1058
SsiI	CCGC	5 cut(s)	74, 122, 560, 763, 1064
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	22, 600, 913
TaaI	ACNGT	5 cut(s)	149, 299, 664, 692, 755
TaiI	ACGT	2 cut(s)	249, 1001
TaqI	TCGA	3 cut(s)	60, 263, 313
TasI	AATT	7 cut(s)	54, 215, 353, 415, 517, 1021, 1058
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	3 cut(s)	341, 503, 1273
Tru1I	TTAA	4 cut(s)	233, 612, 1170, 1266
Tru9I	TTAA	4 cut(s)	233, 612, 1170, 1266
TscAI	CASTG	7 cut(s)	228, 294, 669, 695, 721, 807, 1079
TseFI	GTSAC	3 cut(s)	219, 257, 749
TseI	GCWGC	7 cut(s)	305, 308, 461, 584, 1104, 1107, 1238
Tsp45I	GTSAC	3 cut(s)	219, 257, 749
TspDTI	ATGAA	3 cut(s)	584, 620, 1205
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	7 cut(s)	228, 294, 669, 695, 721, 807, 1079
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	856
XapI	RAATTY	1 cut(s)	1021
XbaI	TCTAGA	1 cut(s)	197
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XhoI	CTCGAG	2 cut(s)	262, 312
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	3 cut(s)	457, 1094, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.