Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001911.1

Orthogroup ID

OG0010984

Physical Location & Seq

Genomic Coordinates Forward (+)

136162 .. 140501

Gene Structure 4340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001911.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgagtgagtgcaatgactcgaggaacccttttgtggagcaagcagtgcaatactgtgtggctgctgctcgagcaacacttgacaaggacaagaaggattcattagagaaattactattgcaaggtcttgacatcacgattttaggaagcaatgacttttattcgtatcggaattacattgaagcccgtggtctgcctttgactccagatgcattggctgcacttcctgcctttgcatctattaccttcaatgccgaggaatcaaatggagaaaattgtaagcctgaagttgcaaaaactggactcggttcttctgcggcaatgacaactgctgttgttgctgctttgcttcattacctgggggttgttaatcttgcctctgtgcttcatcaagaaaaggacaccacagatcttgatacagtgcatgtgatagctcaaactgctcactgtcttgcacagggaaaagtgggcagtggttttgatgttagctctgcagtttatggaagtcaccgttatgtccgcttttcaccagaagtgatttcttctgcacaggttgcagtgatgggaactccactacctgaagtcgttcttgaaatcctaaaaggaaagtgggaccatgagaggactaagttctgtttgccaccattgatgactcttttgctcggagaaccagggactggaggatcatccactccatcaatggtaggtgctgtgaaaaagtggcagaagtctgaccctgagaaatctttggacacattgagaaagttgtcagaggcaaattcagcccttgaaacacaactcaatactctaagcaaattggcggaaaaacactgggatgactataaatgcgtgatagacagctgcagcattctgaaaacagacaagtggatagagcacgtcggtaatccaaaccaacaagcaatagttaaagcattgttaggagcaagagatgctatgcttgggatcaggtttcatatgcatcagatgggtgaggctgcaggtgttccgatagagccagaatcacaaacaaagcttttggatgctactatgagtatggaaggagttttgctggccggagttcctggagcaggtggatttgatgcagtatttgcagttaccttaggggattctggaagccacgtgacaaaatcatggagctcattcaatgttttggccttgttagttagagaagatccacatggtgtttctttagagtcggctgatccacgaacaaaggaaattacctcatccatttcctcggttcatattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004631 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006066 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006694 GO:0006696 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0019287 GO:0019637 GO:0019693 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046483 GO:0046490 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097384 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

424

Amino Acids

45.46

Weight (kDa)

5.41

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31910 AT1G31910
fragaria_vesca	FvH4_5g23300
malus_domestica	MD09G1247700.v1.1 MD17G1240600.v1.1
prunus_persica	Prupe.5G026300_v2.0.a1 Prupe.5G026300_v2.0.a1
pyrus_communis	pycom09g16520 pycom17g24390
rosa_chinensis	RchiOBHm_Chr7g0212251
rosa_laevigata	RLG00000002903
rosa_multiflora	Rmu_sc0001911.1_g000042 Rmu_sc0002882.1_g000066
rosa_roxburghii	Rroxscaffold_3G00246980
rosa_rugosa	Rorug07G0132800
rosa_samantha	Rh7AG265600 Rh7BG259800 Rh7CG282400 Rh7DG272500
rosa_wichuraiana	Rw7G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	989, 1079
Acc36I	ACCTGC	2 cut(s)	989, 1079
AccB7I	CCANNNNNTGG	1 cut(s)	677
AciI	CCGC	3 cut(s)	317, 520, 821
AclWI	GGATC	4 cut(s)	691, 971, 1187, 1217
AcoI	YGGCCR	1 cut(s)	1071
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	2 cut(s)	306, 600
AcvI	CACGTG	1 cut(s)	1141
AdeI	CACNNNGTG	1 cut(s)	1202
AfiI	CCNNNNNNNGG	3 cut(s)	34, 677, 1088
AgsI	TTSAA	5 cut(s)	182, 250, 593, 791, 1165
AjiI	CACGTC	1 cut(s)	898
AjnI	CCWGG	3 cut(s)	357, 670, 1081
AluBI	AGCT	5 cut(s)	434, 489, 861, 1033, 1158
AluI	AGCT	5 cut(s)	434, 489, 861, 1033, 1158
Alw21I	GWGCWC	2 cut(s)	897, 1160
AlwI	GGATC	4 cut(s)	691, 971, 1187, 1217
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	2 cut(s)	19, 69
AoxI	GGCC	2 cut(s)	1071, 1173
ApeKI	GCWGC	7 cut(s)	62, 65, 218, 341, 861, 864, 995
ApoI	RAATTY	1 cut(s)	778
Asp700I	GAANNNNTTC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	613
AsuHPI	GGTGA	3 cut(s)	500, 519, 1001
AvaI	CYCGRG	2 cut(s)	19, 69
AvaII	GGWCC	1 cut(s)	613
AxyI	CCTNAGG	1 cut(s)	1120
BanII	GRGCYC	1 cut(s)	1160
BbrPI	CACGTG	1 cut(s)	1141
Bbv12I	GWGCWC	2 cut(s)	897, 1160
BbvI	GCAGC	7 cut(s)	49, 52, 205, 328, 848, 876, 982
BccI	CCATC	3 cut(s)	556, 703, 979
BciT130I	CCWGG	3 cut(s)	359, 672, 1083
BfmI	CTRYAG	3 cut(s)	492, 862, 996
BfuAI	ACCTGC	2 cut(s)	989, 1079
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	8 cut(s)	63, 66, 219, 318, 342, 862, 865, 996
BlsI	GCNGC	8 cut(s)	64, 67, 220, 319, 343, 863, 866, 997
Bme1390I	CCNGG	3 cut(s)	359, 672, 1083
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	2 cut(s)	19, 69
BmgBI	CACGTC	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	2 cut(s)	26, 614
BmrFI	CCNGG	3 cut(s)	359, 672, 1083
BmrI	ACTGGG	1 cut(s)	841
BmsI	GCATC	6 cut(s)	199, 245, 940, 988, 1030, 1090
BmuI	ACTGGG	1 cut(s)	841
BpmI	CTGGAG	3 cut(s)	189, 699, 1104
BsaAI	YACGTR	1 cut(s)	1141
BsaJI	CCNNGG	5 cut(s)	187, 255, 358, 671, 1257
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 677, 1088
Bse1I	ACTGG	3 cut(s)	304, 682, 836
Bse21I	CCTNAGG	1 cut(s)	1120
Bse3DI	GCAATG	3 cut(s)	19, 157, 327
BseBI	CCWGG	3 cut(s)	359, 672, 1083
BseDI	CCNNGG	5 cut(s)	187, 255, 358, 671, 1257
BseGI	GGATG	4 cut(s)	686, 841, 1045, 1247
BseLI	CCNNNNNNNGG	3 cut(s)	34, 677, 1088
BseMI	GCAATG	3 cut(s)	19, 157, 327
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	3 cut(s)	304, 682, 836
BseXI	GCAGC	7 cut(s)	49, 52, 205, 328, 848, 876, 982
BsgI	GTGCAG	2 cut(s)	204, 531
BshFI	GGCC	2 cut(s)	1073, 1175
BsiHKAI	GWGCWC	2 cut(s)	897, 1160
BsiHKCI	CYCGRG	2 cut(s)	19, 69
BsiSI	CCGG	1 cut(s)	1074
BslFI	GGGAC	2 cut(s)	626, 688
BslI	CCNNNNNNNGG	3 cut(s)	34, 677, 1088
BsmFI	GGGAC	2 cut(s)	626, 688
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	2 cut(s)	1073, 1175
BsoBI	CYCGRG	2 cut(s)	19, 69
Bsp1286I	GDGCHC	2 cut(s)	897, 1160
Bsp143I	GATC	5 cut(s)	409, 683, 963, 1192, 1222
BspACI	CCGC	3 cut(s)	317, 520, 821
BspANI	GGCC	2 cut(s)	1073, 1175
BspCNI	CTCAG	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	26, 614
BspMAI	CTGCAG	3 cut(s)	496, 866, 1000
BspMI	ACCTGC	2 cut(s)	989, 1079
BspPI	GGATC	4 cut(s)	691, 971, 1187, 1217
BsrDI	GCAATG	3 cut(s)	19, 157, 327
BsrI	ACTGG	3 cut(s)	304, 682, 836
BssECI	CCNNGG	5 cut(s)	187, 255, 358, 671, 1257
BssMI	GATC	5 cut(s)	409, 683, 963, 1192, 1222
Bst2UI	CCWGG	3 cut(s)	359, 672, 1083
Bst4CI	ACNGT	4 cut(s)	56, 421, 449, 512
BstAPI	GCANNNNNTGC	6 cut(s)	46, 218, 227, 554, 950, 1109
BstBAI	YACGTR	1 cut(s)	1141
BstC8I	GCNNGC	2 cut(s)	42, 1071
BstDEI	CTNAG	4 cut(s)	627, 738, 809, 1120
BstDSI	CCRYGG	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	1086
BstF5I	GGATG	4 cut(s)	686, 841, 1045, 1247
BstKTI	GATC	5 cut(s)	412, 686, 966, 1195, 1225
BstMBI	GATC	5 cut(s)	409, 683, 963, 1192, 1222
BstNI	CCWGG	3 cut(s)	359, 672, 1083
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	3 cut(s)	357, 670, 1081
BstSFI	CTRYAG	3 cut(s)	492, 862, 996
BstV1I	GCAGC	7 cut(s)	49, 52, 205, 328, 848, 876, 982
BstX2I	RGATCY	2 cut(s)	409, 1192
BstYI	RGATCY	2 cut(s)	409, 1192
Bsu36I	CCTNAGG	1 cut(s)	1120
BsuRI	GGCC	2 cut(s)	1073, 1175
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	898
BtsCI	GGATG	4 cut(s)	686, 841, 1045, 1247
BtsI	GCAGTG	3 cut(s)	51, 478, 564
BtsIMutI	CAGTG	6 cut(s)	51, 426, 445, 478, 564, 829
BveI	ACCTGC	2 cut(s)	989, 1079
Cac8I	GCNNGC	2 cut(s)	42, 1071
CaiI	CAGNNNCTG	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	613
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	4 cut(s)	425, 617, 1152, 1199
DdeI	CTNAG	4 cut(s)	627, 738, 809, 1120
DpnI	GATC	5 cut(s)	411, 685, 965, 1194, 1224
DpnII	GATC	5 cut(s)	409, 683, 963, 1192, 1222
DraIII	CACNNNGTG	1 cut(s)	1202
EaeI	YGGCCR	1 cut(s)	1071
EciI	GGCGGA	1 cut(s)	836
Ecl136II	GAGCTC	1 cut(s)	1158
Eco24I	GRGCYC	1 cut(s)	1160
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	1158
Eco57I	CTGAAG	2 cut(s)	306, 600
Eco72I	CACGTG	1 cut(s)	1141
Eco81I	CCTNAGG	1 cut(s)	1120
Eco88I	CYCGRG	2 cut(s)	19, 69
EcoICRI	GAGCTC	1 cut(s)	1158
EcoNI	CCTNNNNNAGG	1 cut(s)	1086
EcoRII	CCWGG	3 cut(s)	357, 670, 1081
EcoT22I	ATGCAT	2 cut(s)	214, 981
EcoT38I	GRGCYC	1 cut(s)	1160
FaeI	CATG	4 cut(s)	428, 620, 1155, 1202
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	2 cut(s)	626, 688
FatI	CATG	4 cut(s)	424, 616, 1151, 1198
FauNDI	CATATG	1 cut(s)	975
Fnu4HI	GCNGC	8 cut(s)	63, 66, 219, 318, 342, 862, 865, 996
FokI	GGATG	4 cut(s)	673, 848, 1052, 1234
FriOI	GRGCYC	1 cut(s)	1160
Fsp4HI	GCNGC	8 cut(s)	63, 66, 219, 318, 342, 862, 865, 996
GluI	GCNGC	8 cut(s)	63, 66, 219, 318, 342, 862, 865, 996
GsuI	CTGGAG	3 cut(s)	189, 699, 1104
HaeIII	GGCC	2 cut(s)	1073, 1175
HapII	CCGG	1 cut(s)	1074
Hin1II	CATG	4 cut(s)	428, 620, 1155, 1202
HindIII	AAGCTT	1 cut(s)	1031
HinfI	GANTC	9 cut(s)	17, 98, 202, 260, 303, 652, 1019, 1127, 1214
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	3 cut(s)	500, 519, 1001
Hpy188I	TCNGA	7 cut(s)	171, 665, 733, 772, 873, 984, 1008
Hpy188III	TCNNGA	7 cut(s)	128, 136, 206, 392, 413, 590, 1131
Hpy99I	CGWCG	1 cut(s)	902
HpyAV	CCTTC	3 cut(s)	88, 256, 1052
HpyCH4III	ACNGT	4 cut(s)	56, 421, 449, 512
HpyCH4IV	ACGT	2 cut(s)	897, 1140
HpyF3I	CTNAG	4 cut(s)	627, 738, 809, 1120
HpySE526I	ACGT	2 cut(s)	897, 1140
Hsp92II	CATG	4 cut(s)	428, 620, 1155, 1202
Kzo9I	GATC	5 cut(s)	409, 683, 963, 1192, 1222
LmnI	GCTCC	4 cut(s)	37, 941, 1085, 1155
Lsp1109I	GCAGC	7 cut(s)	49, 52, 205, 328, 848, 876, 982
LweI	GCATC	6 cut(s)	199, 245, 940, 988, 1030, 1090
MaeII	ACGT	2 cut(s)	897, 1140
MaeIII	GTNAC	3 cut(s)	506, 1114, 1141
MalI	GATC	5 cut(s)	411, 685, 965, 1194, 1224
MboI	GATC	5 cut(s)	409, 683, 963, 1192, 1222
MboII	GAAGA	3 cut(s)	303, 534, 1202
MflI	RGATCY	2 cut(s)	409, 1192
MhlI	GDGCHC	2 cut(s)	897, 1160
MluCI	AATT	6 cut(s)	110, 172, 274, 778, 815, 1239
MlyI	GAGTC	5 cut(s)	11, 196, 297, 646, 1223
MnlI	CCTC	9 cut(s)	15, 250, 388, 615, 674, 766, 985, 1255, 1267
Mph1103I	ATGCAT	2 cut(s)	214, 981
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	3 cut(s)	369, 927, 1273
MslI	CAYNNNNRTG	2 cut(s)	513, 834
MspA1I	CMGCKG	1 cut(s)	861
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	3 cut(s)	359, 672, 1083
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	3 cut(s)	359, 672, 1083
NdeI	CATATG	1 cut(s)	975
NdeII	GATC	5 cut(s)	409, 683, 963, 1192, 1222
NlaIII	CATG	4 cut(s)	428, 620, 1155, 1202
NlaIV	GGNNCC	2 cut(s)	26, 614
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	506, 1141
NsiI	ATGCAT	2 cut(s)	214, 981
NspI	RCATGY	1 cut(s)	428
PaeR7I	CTCGAG	2 cut(s)	19, 69
PaqCI	CACCTGC	2 cut(s)	989, 1079
PctI	GAATGC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	98, 260, 1019, 1127
PflMI	CCANNNNNTGG	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	1081
PkrI	GCNGC	8 cut(s)	64, 67, 220, 319, 343, 863, 866, 997
PleI	GAGTC	5 cut(s)	11, 196, 297, 646, 1222
PmaCI	CACGTG	1 cut(s)	1141
PmlI	CACGTG	1 cut(s)	1141
PpsI	GAGTC	5 cut(s)	11, 196, 297, 646, 1222
Ppu21I	YACGTR	1 cut(s)	1141
Psp124BI	GAGCTC	1 cut(s)	1160
Psp6I	CCWGG	3 cut(s)	357, 670, 1081
PspCI	CACGTG	1 cut(s)	1141
PspGI	CCWGG	3 cut(s)	357, 670, 1081
PspN4I	GGNNCC	2 cut(s)	26, 614
PspPI	GGNCC	1 cut(s)	613
PspXI	VCTCGAGB	2 cut(s)	19, 69
PstI	CTGCAG	3 cut(s)	496, 866, 1000
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	409, 1192
PvuII	CAGCTG	1 cut(s)	861
RseI	CAYNNNNRTG	2 cut(s)	513, 834
SacI	GAGCTC	1 cut(s)	1160
SaqAI	TTAA	3 cut(s)	369, 927, 1273
SatI	GCNGC	8 cut(s)	63, 66, 219, 318, 342, 862, 865, 996
Sau3AI	GATC	5 cut(s)	409, 683, 963, 1192, 1222
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	5 cut(s)	11, 196, 297, 646, 1223
ScrFI	CCNGG	3 cut(s)	359, 672, 1083
SduI	GDGCHC	2 cut(s)	897, 1160
SfaNI	GCATC	6 cut(s)	199, 245, 940, 988, 1030, 1090
SfcI	CTRYAG	3 cut(s)	492, 862, 996
Sfr274I	CTCGAG	2 cut(s)	19, 69
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	2 cut(s)	19, 69
SmiMI	CAYNNNNRTG	2 cut(s)	513, 834
SmlI	CTYRAG	2 cut(s)	19, 69
SmoI	CTYRAG	2 cut(s)	19, 69
Sse9I	AATT	6 cut(s)	110, 172, 274, 778, 815, 1239
SsiI	CCGC	3 cut(s)	317, 520, 821
SstI	GAGCTC	1 cut(s)	1160
StyD4I	CCNGG	3 cut(s)	357, 670, 1081
TaaI	ACNGT	4 cut(s)	56, 421, 449, 512
TaiI	ACGT	2 cut(s)	900, 1143
TaqI	TCGA	2 cut(s)	20, 70
TasI	AATT	6 cut(s)	110, 172, 274, 778, 815, 1239
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	4 cut(s)	98, 260, 1019, 1127
Tru1I	TTAA	3 cut(s)	369, 927, 1273
Tru9I	TTAA	3 cut(s)	369, 927, 1273
TscAI	CASTG	6 cut(s)	51, 426, 452, 478, 564, 836
TseFI	GTSAC	2 cut(s)	506, 1141
TseI	GCWGC	7 cut(s)	62, 65, 218, 341, 861, 864, 995
Tsp45I	GTSAC	2 cut(s)	506, 1141
TspDTI	ATGAA	5 cut(s)	90, 341, 377, 962, 1253
TspRI	CASTG	6 cut(s)	51, 426, 452, 478, 564, 836
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	1086
XapI	RAATTY	1 cut(s)	778
XceI	RCATGY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XhoI	CTCGAG	2 cut(s)	19, 69
XmnI	GAANNNNTTC	1 cut(s)	585
Zsp2I	ATGCAT	2 cut(s)	214, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.