MD09G1264500.v1.1

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016407
Physical Location & Seq
Forward (+)
33746792 .. 33747916
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1264500.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGGCTTCTTTTGCAACTATCCTAAGCTATGAAACTCCATCCCTTCTCAAAACCGCTGCTAATTTTGGTCGTCTCAACGAAATTCTGAATGGCAGCACTAGAACCTCATCAACTGCTCTCATTCGCATGAAGATAAAGGCCACAGCTACACGAGTTACTGACTCAGCGTCTGCATTCCAACCATTGCTCGTCGATGGAGAACCAATCGCCAAACCACTCGAAACCACCCAGTTTCCGGTGTTCAAATTCGATGAGTACATGTCAACGAAGGCAAAGATGGTGGACAAGGCGTTGAACGAGGCCGTGCCTTTGCAGTACCCCAAGAAAATCCATAGGGCAATGAGGTACTCGCTTTTGGCTGGCGGAAAGCGCGTGCGGCCGGTTTTGTGTCTCGCTTCATGTGAATTAGTTGGAGGGGATGAGTCACTTGCAATCCCAGTAGCTTGTGCCGTTGAAATGATCCACACCATGTCGCTTATTCACGATGATCTCCCTTGCATGGACAACGACGATCTTCGTCGCGGGAAGCCTACCAACCACAAGGCTTTTGGGGAGGAAACCGCGGTTCTAGCCGGTGATGCGCTTCTTTCCCTTGCCTTTGAACATGTAGCGGCCAAGACAACAAAAGTAGTATCGCCGGAGCGTGTGGTTCGAGCCATCACCGAGCTTGGTTCGGCCGTCGGATCATTAGGCCTCGTGGCGGGTCAAATGGTGGACATTCAAAGCGAAGGCAAAGAAGTGACGCTGCGAGAACTCGAGTACATTCACGTGCATAAGACCGCGAAGCTCCTCGAGGCATCGGTGGTTTGCGGGGCAATCATCGGAGGAGCAGGTGAAGGGGAGGTGGAGAGGATGAGGAAGTATGCAAGGTGTATAGGTTTGTTGTTTCAAGTGGTGGACGACATTTTGGACGTGACGAAATCGTCAGAGGAATTGGGGAAGACGGCCGGGAAAGATTTGGCAAGCGATAAGGCGACATATCCAAAGCTGATGGGTATTGAAGGGGCAAAGAATTTTGCTGCCGAGTTGGTGGCGCAAGCAGTGCAAGAGCTTGCTCATTTCGATGCTGCTAGGGCGGCTCCATTGTATTATTTAGCCAATTTTATTGCCAATAGACAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

375

Amino Acids

40.33

Weight (kDa)

6.48

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 108 - 345 2.7e-60 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 821
AasI GACNNNNNNGTC 1 cut(s) 922
AbsI CCTCGAGG 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 821
AccII CGCG 4 cut(s) 372, 522, 563, 782
AclWI GGATC 2 cut(s) 454, 691
AcoI YGGCCR 4 cut(s) 377, 612, 675, 945
AcsI RAATTY 3 cut(s) 81, 245, 1012
AcvI CACGTG 1 cut(s) 769
AfaI GTAC 4 cut(s) 257, 317, 347, 761
AfiI CCNNNNNNNGG 3 cut(s) 235, 499, 700
AflIII ACRYGT 2 cut(s) 258, 604
AgsI TTSAA 7 cut(s) 244, 295, 455, 602, 722, 890, 1001
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 913
AluBI AGCT 7 cut(s) 27, 146, 443, 667, 787, 988, 1051
AluI AGCT 7 cut(s) 27, 146, 443, 667, 787, 988, 1051
Alw26I GTCTC 2 cut(s) 77, 395
AlwI GGATC 2 cut(s) 454, 691
AlwNI CAGNNNCTG 1 cut(s) 170
Ama87I CYCGRG 2 cut(s) 755, 791
AoxI GGCC 7 cut(s) 138, 300, 377, 612, 675, 691, 945
ApeKI GCWGC 5 cut(s) 56, 93, 745, 1019, 1067
ApoI RAATTY 3 cut(s) 81, 245, 1012
AspLEI GCGC 3 cut(s) 372, 583, 1036
AsuC2I CCSGG 1 cut(s) 949
AsuHPI GGTGA 3 cut(s) 587, 652, 845
AvaI CYCGRG 2 cut(s) 755, 791
BauI CACGAG 2 cut(s) 150, 695
BbrPI CACGTG 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 947
BbvI GCAGC 5 cut(s) 43, 105, 732, 1006, 1054
BccI CCATC 5 cut(s) 46, 188, 271, 665, 985
BceAI ACGGC 4 cut(s) 287, 434, 662, 960
BcnI CCSGG 1 cut(s) 949
BcoDI GTCTC 2 cut(s) 77, 395
BfaI CTAG 3 cut(s) 99, 569, 1071
BfuAI ACCTGC 1 cut(s) 821
BisI GCNGC 8 cut(s) 57, 94, 377, 612, 746, 1020, 1068, 1077
BlsI GCNGC 8 cut(s) 58, 95, 378, 613, 747, 1021, 1069, 1078
Bme1390I CCNGG 1 cut(s) 949
BmeRI GACNNNNNGTC 1 cut(s) 166
BmeT110I CYCGRG 2 cut(s) 755, 791
BmgBI CACGTC 1 cut(s) 913
BmiI GGNNCC 1 cut(s) 1080
BmrFI CCNGG 1 cut(s) 949
BmrI ACTGGG 2 cut(s) 223, 431
BmsI GCATC 3 cut(s) 568, 806, 1054
BmuI ACTGGG 2 cut(s) 223, 431
BpiI GAAGAC 1 cut(s) 947
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 949
BsaAI YACGTR 1 cut(s) 769
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 499, 700
Bse118I RCCGGY 2 cut(s) 379, 572
Bse1I ACTGG 2 cut(s) 229, 437
Bse3DI GCAATG 2 cut(s) 182, 345
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 3 cut(s) 38, 424, 858
BseLI CCNNNNNNNGG 3 cut(s) 235, 499, 700
BseMI GCAATG 2 cut(s) 182, 345
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 229, 437
BseRI GAGGAG 2 cut(s) 779, 840
BseX3I CGGCCG 3 cut(s) 377, 675, 945
BseXI GCAGC 5 cut(s) 43, 105, 732, 1006, 1054
Bsh1236I CGCG 4 cut(s) 372, 522, 563, 782
Bsh1285I CGRYCG 3 cut(s) 380, 678, 948
BshFI GGCC 7 cut(s) 140, 302, 379, 614, 677, 693, 947
BsiEI CGRYCG 3 cut(s) 380, 678, 948
BsiHKCI CYCGRG 2 cut(s) 755, 791
BsiSI CCGG 5 cut(s) 236, 380, 573, 638, 948
BslI CCNNNNNNNGG 3 cut(s) 235, 499, 700
BsmAI GTCTC 2 cut(s) 77, 395
BsmBI CGTCTC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 7 cut(s) 140, 302, 379, 614, 677, 693, 947
BsoBI CYCGRG 2 cut(s) 755, 791
Bsp143I GATC 4 cut(s) 459, 487, 511, 683
BspANI GGCC 7 cut(s) 140, 302, 379, 614, 677, 693, 947
BspCNI CTCAG 1 cut(s) 176
BspFNI CGCG 4 cut(s) 372, 522, 563, 782
BspLI GGNNCC 1 cut(s) 1080
BspMI ACCTGC 1 cut(s) 821
BspPI GGATC 2 cut(s) 454, 691
BsrDI GCAATG 2 cut(s) 182, 345
BsrFI RCCGGY 2 cut(s) 379, 572
BsrI ACTGG 2 cut(s) 229, 437
BssAI RCCGGY 2 cut(s) 379, 572
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 459, 487, 511, 683
BssSI CACGAG 2 cut(s) 150, 695
Bst2BI CACGAG 2 cut(s) 150, 695
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 5 cut(s) 361, 374, 964, 1038, 1053
BstDEI CTNAG 2 cut(s) 23, 163
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 3 cut(s) 38, 424, 858
BstFNI CGCG 4 cut(s) 372, 522, 563, 782
BstHHI GCGC 3 cut(s) 372, 583, 1036
BstKTI GATC 4 cut(s) 462, 490, 514, 686
BstMAI GTCTC 2 cut(s) 77, 395
BstMBI GATC 4 cut(s) 459, 487, 511, 683
BstMCI CGRYCG 3 cut(s) 380, 678, 948
BstMWI GCNNNNNNNGC 8 cut(s) 11, 369, 376, 569, 578, 1042, 1073, 1076
BstNSI RCATGY 2 cut(s) 262, 608
BstSCI CCNGG 1 cut(s) 947
BstUI CGCG 4 cut(s) 372, 522, 563, 782
BstV1I GCAGC 5 cut(s) 43, 105, 732, 1006, 1054
BstV2I GAAGAC 1 cut(s) 947
BstZI CGGCCG 3 cut(s) 377, 675, 945
BsuRI GGCC 7 cut(s) 140, 302, 379, 614, 677, 693, 947
BtgI CCRYGG 1 cut(s) 561
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 3 cut(s) 38, 424, 858
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 1 cut(s) 1047
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 5 cut(s) 361, 374, 964, 1038, 1053
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 3 cut(s) 372, 583, 1036
Cfr10I RCCGGY 2 cut(s) 379, 572
Cfr42I CCGCGG 1 cut(s) 564
CseI GACGC 2 cut(s) 156, 751
Csp6I GTAC 4 cut(s) 256, 316, 346, 760
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 6 cut(s) 127, 259, 399, 469, 499, 605
CviQI GTAC 4 cut(s) 256, 316, 346, 760
DdeI CTNAG 2 cut(s) 23, 163
DpnI GATC 4 cut(s) 461, 489, 513, 685
DpnII GATC 4 cut(s) 459, 487, 511, 683
DrdI GACNNNNNNGTC 1 cut(s) 922
DriI GACNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 922
EaeI YGGCCR 4 cut(s) 377, 612, 675, 945
EagI CGGCCG 3 cut(s) 377, 675, 945
Eam1105I GACNNNNNGTC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 378
EclXI CGGCCG 3 cut(s) 377, 675, 945
Eco147I AGGCCT 1 cut(s) 693
Eco52I CGGCCG 3 cut(s) 377, 675, 945
Eco72I CACGTG 1 cut(s) 769
Eco88I CYCGRG 2 cut(s) 755, 791
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 6 cut(s) 130, 262, 402, 472, 502, 608
FatI CATG 6 cut(s) 126, 258, 398, 468, 498, 604
FauI CCCGC 3 cut(s) 515, 694, 803
Fnu4HI GCNGC 8 cut(s) 57, 94, 377, 612, 746, 1020, 1068, 1077
FokI GGATG 3 cut(s) 25, 431, 865
Fsp4HI GCNGC 8 cut(s) 57, 94, 377, 612, 746, 1020, 1068, 1077
FspBI CTAG 3 cut(s) 99, 569, 1071
GlaI GCGC 3 cut(s) 371, 582, 1035
GluI GCNGC 8 cut(s) 57, 94, 377, 612, 746, 1020, 1068, 1077
HaeIII GGCC 7 cut(s) 140, 302, 379, 614, 677, 693, 947
HapII CCGG 5 cut(s) 236, 380, 573, 638, 948
HgaI GACGC 2 cut(s) 156, 751
HhaI GCGC 3 cut(s) 372, 583, 1036
Hin1II CATG 6 cut(s) 130, 262, 402, 472, 502, 608
Hin6I GCGC 3 cut(s) 370, 581, 1034
HinP1I GCGC 3 cut(s) 370, 581, 1034
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 2 cut(s) 161, 422
HpaII CCGG 5 cut(s) 236, 380, 573, 638, 948
HphI GGTGA 3 cut(s) 587, 652, 845
Hpy166II GTNNAC 4 cut(s) 264, 283, 715, 898
Hpy188I TCNGA 4 cut(s) 87, 683, 824, 928
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 4 cut(s) 264, 283, 715, 898
Hpy99I CGWCG 4 cut(s) 194, 512, 522, 683
HpyAV CCTTC 5 cut(s) 53, 262, 722, 830, 995
HpyCH4IV ACGT 2 cut(s) 768, 912
HpyCH4V TGCA 8 cut(s) 14, 173, 313, 431, 498, 772, 866, 1045
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 369, 376, 569, 578, 1042, 1073, 1076
HpyF3I CTNAG 2 cut(s) 23, 163
HpySE526I ACGT 2 cut(s) 768, 912
Hsp92II CATG 6 cut(s) 130, 262, 402, 472, 502, 608
HspAI GCGC 3 cut(s) 370, 581, 1034
KspI CCGCGG 1 cut(s) 564
Kzo9I GATC 4 cut(s) 459, 487, 511, 683
LmnI GCTCC 4 cut(s) 640, 792, 827, 1084
LpnPI CCDG 9 cut(s) 242, 249, 345, 393, 450, 586, 651, 816, 961
Lsp1109I GCAGC 5 cut(s) 43, 105, 732, 1006, 1054
LweI GCATC 3 cut(s) 568, 806, 1054
MaeI CTAG 3 cut(s) 99, 569, 1071
MaeII ACGT 2 cut(s) 768, 912
MaeIII GTNAC 4 cut(s) 154, 423, 739, 913
MalI GATC 4 cut(s) 461, 489, 513, 685
MboI GATC 4 cut(s) 459, 487, 511, 683
MboII GAAGA 3 cut(s) 142, 506, 952
MluCI AATT 7 cut(s) 61, 81, 245, 404, 932, 1012, 1099
MlyI GAGTC 2 cut(s) 155, 431
MmeI TCCRAC 3 cut(s) 202, 391, 661
MslI CAYNNNNRTG 3 cut(s) 125, 767, 1062
MspA1I CMGCKG 2 cut(s) 56, 563
MspI CCGG 5 cut(s) 236, 380, 573, 638, 948
MspR9I CCNGG 1 cut(s) 949
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 4 cut(s) 372, 522, 563, 782
MwoI GCNNNNNNNGC 8 cut(s) 11, 369, 376, 569, 578, 1042, 1073, 1076
NciI CCSGG 1 cut(s) 949
NdeII GATC 4 cut(s) 459, 487, 511, 683
NlaIII CATG 6 cut(s) 130, 262, 402, 472, 502, 608
NlaIV GGNNCC 1 cut(s) 1080
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 3 cut(s) 423, 739, 913
NspI RCATGY 2 cut(s) 262, 608
PaeR7I CTCGAG 2 cut(s) 755, 791
PaqCI CACCTGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 693
PciI ACATGT 2 cut(s) 258, 604
PctI GAATGC 1 cut(s) 173
PkrI GCNGC 8 cut(s) 58, 95, 378, 613, 747, 1021, 1069, 1078
PleI GAGTC 2 cut(s) 155, 430
PmaCI CACGTG 1 cut(s) 769
PmlI CACGTG 1 cut(s) 769
PpsI GAGTC 2 cut(s) 155, 430
Ppu21I YACGTR 1 cut(s) 769
PscI ACATGT 2 cut(s) 258, 604
PspCI CACGTG 1 cut(s) 769
PspN4I GGNNCC 1 cut(s) 1080
PspXI VCTCGAGB 2 cut(s) 755, 791
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 4 cut(s) 257, 317, 347, 761
RsaNI GTAC 4 cut(s) 256, 316, 346, 760
RseI CAYNNNNRTG 3 cut(s) 125, 767, 1062
SacII CCGCGG 1 cut(s) 564
SatI GCNGC 8 cut(s) 57, 94, 377, 612, 746, 1020, 1068, 1077
Sau3AI GATC 4 cut(s) 459, 487, 511, 683
SchI GAGTC 2 cut(s) 155, 431
ScrFI CCNGG 1 cut(s) 949
SfaNI GCATC 3 cut(s) 568, 806, 1054
Sfr274I CTCGAG 2 cut(s) 755, 791
Sfr303I CCGCGG 1 cut(s) 564
SgrBI CCGCGG 1 cut(s) 564
SlaI CTCGAG 2 cut(s) 755, 791
SmiMI CAYNNNNRTG 3 cut(s) 125, 767, 1062
SmlI CTYRAG 2 cut(s) 755, 791
SmoI CTYRAG 2 cut(s) 755, 791
Sse9I AATT 7 cut(s) 61, 81, 245, 404, 932, 1012, 1099
SseBI AGGCCT 1 cut(s) 693
SspMI CTAG 3 cut(s) 99, 569, 1071
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 1 cut(s) 947
TaiI ACGT 2 cut(s) 771, 915
TaqI TCGA 7 cut(s) 192, 219, 249, 652, 756, 792, 1062
TasI AATT 7 cut(s) 61, 81, 245, 404, 932, 1012, 1099
TatI WGTACW 2 cut(s) 255, 759
TauI GCSGC 3 cut(s) 379, 614, 1079
TscAI CASTG 1 cut(s) 1047
TseFI GTSAC 3 cut(s) 423, 739, 913
TseI GCWGC 5 cut(s) 56, 93, 745, 1019, 1067
Tsp45I GTSAC 3 cut(s) 423, 739, 913
TspDTI ATGAA 3 cut(s) 45, 143, 387
TspRI CASTG 1 cut(s) 1047
XapI RAATTY 3 cut(s) 81, 245, 1012
XceI RCATGY 2 cut(s) 262, 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 545
XhoI CTCGAG 2 cut(s) 755, 791
XspI CTAG 3 cut(s) 99, 569, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.