Prupe.3G162100_v2.0.a1

Belongs to the FPP GGPP synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016407
Physical Location & Seq
Forward (+)
18114456 .. 18116023
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G162100.1

Sequence Viewer

Length: 1098 bp
ATGGCTCTTTTCTCAACCATTCCAAGCTATGAAAACTCAGCCCTTCTCAGAAATCCTAATATTGCTCTCAACAAAAGTCCTAGCCCTAGAATATCAATTGGTAGCCTCAGGCTCATTTCCTTGAAGATTAGGGCCACACATACACAAGTTGCTGACTCATCTTCAGTCCAACCATTGCTCACCAAACCACTTGAAATTACCCAGTTGCCCATATTCCAATTTGATGAGTACCTGTCCATGAAGGCAAAGAAGGTGGAGAAAGCTTTGAATGAGGCTGTGCCTTTGCAATACCCCAAGAAAATCCATAGGGCAATGAGGTACTCACTTTTAGCCGGAGGAAAGCGTGTGCGTCCGGTTCTATGCCTTGCTTCGTGTGAATTAGTTGGAGGGGATCAGTCTCTTGCAATCCCAACAGCTTGTGCCGTTGAAATGATCCACACCATGTCACTGATTCATGATGATCTTCCTTGCATGGACAACGACGATCTTCGTCGCGGAAAGCCCACAAACCACAAGGCTTTTGGGGAAGAAACCGCTATTTTAGCCGGTGATGCCCTCCTCTCCCTTGCCTTTGAGCACATAGCGGCTAAGACCACAAAAGTGGTCTCCCCTGAACGCGTGGTTCGGGCCATTGCCGAGCTTGGTTCAGCCGTAGGGTCATCAGGCCTCGTGGCGGGTCAAATTGTTGACATTTTGAGTGAAGGTAAAGAAGTGACACTAGAAGAATTGGAGTACATACATGTGCATAAAACCGCGAAGCTCCTCGAGGCTTCGGTGGTTTGCGGGGCAATAATTGGAGGAGGGAATGAAGGTGAGGTAGAAAGGATGAGGAAGTATGCAAGGTGCATAGGGTTGTTGTTTCAAGTTGTTGACGACATTTTGGATGTGACAAAGTCGTCGGAGGAATTGGGAAAGACGGCTGGGAAGGACTTGGCAAGCGACAAGGCGACATATCCAAAGTTCATGGGCATTGAAGGGGCAAAGAATTTTGCTGCTAAGTTGGTGGCTCAAGCAATAGAAGAGCTTGCTCATTTTGATGCTGCTATGGCTACTCCATTATATTGTTTAGCCAACTACATTGCCAATAGACAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
polyprenyl_synt

Protein Analysis

366

Amino Acids

39.47

Weight (kDa)

6.76

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016407)

Species Orthologous Gene IDs
malus_domestica MD09G1264500.v1.1 MD17G1260500.v1.1
prunus_persica Prupe.3G162100_v2.0.a1
pyrus_communis pycom09g17810 pycom17g26120
rosa_chinensis RchiOBHm_Chr3g0493061
rosa_laevigata RLG00000022731
rosa_multiflora Rmu_sc0003941.1_g000014
rosa_roxburghii Rroxscaffold_6G00391880
rosa_rugosa Rorug03G0258800
rosa_samantha Rh3AG307900 Rh3BG343300 Rh3CG340700 Rh3DG343100
rosa_wichuraiana Rw3G027080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 895
AbsI CCTCGAGG 1 cut(s) 764
AccII CGCG 3 cut(s) 495, 618, 755
AciI CCGC 6 cut(s) 495, 534, 584, 674, 753, 783
AclWI GGATC 2 cut(s) 399, 427
AcsI RAATTY 1 cut(s) 985
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 230, 320, 734
AfiI CCNNNNNNNGG 1 cut(s) 673
AflIII ACRYGT 2 cut(s) 616, 739
AgsI TTSAA 6 cut(s) 124, 194, 268, 428, 863, 974
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 6 cut(s) 27, 263, 416, 640, 760, 1024
AluI AGCT 6 cut(s) 27, 263, 416, 640, 760, 1024
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 402, 610
AlwI GGATC 2 cut(s) 399, 427
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 3 cut(s) 132, 627, 664
ApeKI GCWGC 2 cut(s) 992, 1040
ApoI RAATTY 1 cut(s) 985
AspS9I GGNCC 2 cut(s) 132, 627
AsuHPI GGTGA 3 cut(s) 172, 560, 824
AvaI CYCGRG 1 cut(s) 764
AxyI CCTNAGG 1 cut(s) 107
BauI CACGAG 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 979, 1027
BceAI ACGGC 3 cut(s) 407, 635, 933
BcoDI GTCTC 2 cut(s) 402, 610
BfaI CTAG 3 cut(s) 81, 87, 719
BisI GCNGC 3 cut(s) 585, 993, 1041
BlsI GCNGC 3 cut(s) 586, 994, 1042
BmeT110I CYCGRG 1 cut(s) 764
BmgT120I GGNCC 2 cut(s) 132, 627
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 541, 1027
BmuI ACTGGG 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 107
Bse3DI GCAATG 4 cut(s) 173, 318, 630, 1077
BseGI GGATG 2 cut(s) 831, 889
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMI GCAATG 4 cut(s) 173, 318, 630, 1077
BseMII CTCAG 3 cut(s) 51, 61, 121
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 3 cut(s) 548, 752, 813
BseXI GCAGC 2 cut(s) 979, 1027
BseYI CCCAGC 1 cut(s) 920
Bsh1236I CGCG 3 cut(s) 495, 618, 755
BshFI GGCC 3 cut(s) 134, 629, 666
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 3 cut(s) 333, 353, 546
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 2 cut(s) 402, 610
BsnI GGCC 3 cut(s) 134, 629, 666
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 4 cut(s) 391, 432, 460, 484
BspACI CCGC 6 cut(s) 495, 534, 584, 674, 753, 783
BspANI GGCC 3 cut(s) 134, 629, 666
BspCNI CTCAG 3 cut(s) 50, 60, 120
BspFNI CGCG 3 cut(s) 495, 618, 755
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 2 cut(s) 399, 427
BspQI GCTCTTC 1 cut(s) 1014
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 4 cut(s) 173, 318, 630, 1077
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 545
BssMI GATC 4 cut(s) 391, 432, 460, 484
BssSI CACGAG 1 cut(s) 668
Bst2BI CACGAG 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 1014
BstC8I GCNNGC 2 cut(s) 937, 1026
BstDEI CTNAG 6 cut(s) 37, 47, 107, 588, 996, 1095
BstF5I GGATG 2 cut(s) 831, 889
BstFNI CGCG 3 cut(s) 495, 618, 755
BstKTI GATC 4 cut(s) 394, 435, 463, 487
BstMAI GTCTC 2 cut(s) 402, 610
BstMBI GATC 4 cut(s) 391, 432, 460, 484
BstMWI GCNNNNNNNGC 3 cut(s) 542, 551, 1046
BstNSI RCATGY 1 cut(s) 743
BstUI CGCG 3 cut(s) 495, 618, 755
BstV1I GCAGC 2 cut(s) 979, 1027
BstXI CCANNNNNNTGG 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 107
BsuRI GGCC 3 cut(s) 134, 629, 666
BtsCI GGATG 2 cut(s) 831, 889
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 2 cut(s) 937, 1026
CciI TCATGA 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 132, 627
CseI GACGC 1 cut(s) 338
Csp6I GTAC 3 cut(s) 229, 319, 733
CspCI CAANNNNNGTGG 2 cut(s) 234, 269
CviAII CATG 6 cut(s) 238, 442, 455, 472, 740, 964
CviQI GTAC 3 cut(s) 229, 319, 733
DdeI CTNAG 6 cut(s) 37, 47, 107, 588, 996, 1095
DpnI GATC 4 cut(s) 393, 434, 462, 486
DpnII GATC 4 cut(s) 391, 432, 460, 484
DrdI GACNNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 895
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
Eco147I AGGCCT 1 cut(s) 666
Eco31I GGTCTC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 764
FaeI CATG 6 cut(s) 241, 445, 458, 475, 743, 967
FatI CATG 6 cut(s) 237, 441, 454, 471, 739, 963
FauI CCCGC 2 cut(s) 667, 776
Fnu4HI GCNGC 3 cut(s) 585, 993, 1041
FokI GGATG 2 cut(s) 838, 896
Fsp4HI GCNGC 3 cut(s) 585, 993, 1041
FspBI CTAG 3 cut(s) 81, 87, 719
GluI GCNGC 3 cut(s) 585, 993, 1041
GsaI CCCAGC 1 cut(s) 924
HaeIII GGCC 3 cut(s) 134, 629, 666
HapII CCGG 3 cut(s) 333, 353, 546
HgaI GACGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 241, 445, 458, 475, 743, 967
HincII GTYRAC 2 cut(s) 688, 871
HindII GTYRAC 2 cut(s) 688, 871
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 155, 451
HpaII CCGG 3 cut(s) 333, 353, 546
HphI GGTGA 3 cut(s) 172, 560, 824
Hpy166II GTNNAC 2 cut(s) 688, 871
Hpy188I TCNGA 2 cut(s) 50, 901
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 688, 871
Hpy99I CGWCG 3 cut(s) 485, 495, 901
HpyAV CCTTC 7 cut(s) 53, 235, 244, 695, 803, 919, 968
HpyCH4V TGCA 6 cut(s) 286, 404, 471, 745, 839, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 551, 1046
HpyF3I CTNAG 6 cut(s) 37, 47, 107, 588, 996, 1095
Hsp92II CATG 6 cut(s) 241, 445, 458, 475, 743, 967
Kzo9I GATC 4 cut(s) 391, 432, 460, 484
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 1 cut(s) 765
LpnPI CCDG 9 cut(s) 94, 215, 245, 346, 366, 559, 624, 648, 906
Lsp1109I GCAGC 2 cut(s) 979, 1027
LweI GCATC 2 cut(s) 541, 1027
MaeI CTAG 3 cut(s) 81, 87, 719
MaeIII GTNAC 3 cut(s) 444, 712, 886
MalI GATC 4 cut(s) 393, 434, 462, 486
MboI GATC 4 cut(s) 391, 432, 460, 484
MboII GAAGA 7 cut(s) 136, 153, 455, 479, 539, 734, 1031
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 9 cut(s) 96, 195, 218, 377, 681, 725, 792, 905, 985
MluI ACGCGT 1 cut(s) 616
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 3 cut(s) 193, 364, 879
MslI CAYNNNNRTG 3 cut(s) 599, 740, 1035
MspI CCGG 3 cut(s) 333, 353, 546
MunI CAATTG 1 cut(s) 96
MvnI CGCG 3 cut(s) 495, 618, 755
MwoI GCNNNNNNNGC 3 cut(s) 542, 551, 1046
NdeII GATC 4 cut(s) 391, 432, 460, 484
NlaIII CATG 6 cut(s) 241, 445, 458, 475, 743, 967
NmeAIII GCCGAG 1 cut(s) 661
NmuCI GTSAC 3 cut(s) 444, 712, 886
NspI RCATGY 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 764
PagI TCATGA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 666
PciI ACATGT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 1014
PfeI GAWTC 1 cut(s) 451
PflFI GACNNNGTC 1 cut(s) 892
PkrI GCNGC 3 cut(s) 586, 994, 1042
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PscI ACATGT 1 cut(s) 739
PspFI CCCAGC 1 cut(s) 920
PspPI GGNCC 2 cut(s) 132, 627
PspXI VCTCGAGB 1 cut(s) 764
PsyI GACNNNGTC 1 cut(s) 892
RsaI GTAC 3 cut(s) 230, 320, 734
RsaNI GTAC 3 cut(s) 229, 319, 733
RseI CAYNNNNRTG 3 cut(s) 599, 740, 1035
SapI GCTCTTC 1 cut(s) 1014
SatI GCNGC 3 cut(s) 585, 993, 1041
Sau3AI GATC 4 cut(s) 391, 432, 460, 484
Sau96I GGNCC 2 cut(s) 132, 627
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 2 cut(s) 541, 1027
Sfr274I CTCGAG 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 3 cut(s) 599, 740, 1035
SmlI CTYRAG 2 cut(s) 764, 1008
SmoI CTYRAG 2 cut(s) 764, 1008
Sse9I AATT 9 cut(s) 96, 195, 218, 377, 681, 725, 792, 905, 985
SseBI AGGCCT 1 cut(s) 666
SsiI CCGC 6 cut(s) 495, 534, 584, 674, 753, 783
SspI AATATT 1 cut(s) 61
SspMI CTAG 3 cut(s) 81, 87, 719
StuI AGGCCT 1 cut(s) 666
TaqI TCGA 1 cut(s) 765
TasI AATT 9 cut(s) 96, 195, 218, 377, 681, 725, 792, 905, 985
TatI WGTACW 1 cut(s) 732
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 3 cut(s) 444, 712, 886
TseI GCWGC 2 cut(s) 992, 1040
Tsp45I GTSAC 3 cut(s) 444, 712, 886
TspDTI ATGAA 5 cut(s) 45, 254, 443, 822, 952
TspRI CASTG 1 cut(s) 453
Tth111I GACNNNGTC 1 cut(s) 892
XapI RAATTY 1 cut(s) 985
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 764
XspI CTAG 3 cut(s) 81, 87, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.